mRNA_P-fluviatile_contig22.4723.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4723.1
Unique NamemRNA_P-fluviatile_contig22.4723.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4723.1 vs. uniprot
Match: D7G6V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 8.990e-45
Identity = 96/132 (72.73%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:  160 MAVREEMWAQAARDRDALEAELGLRHEEERSRFLDEANERAIEIIEEVKAKMAAEAERDRELYAQRAALAEEGQELAREDRRQLQMEKXXXXXXXXXXXXXXDATRRKIIIKFKARENALRKNFEAQLKDAR 555
            MAVREEMWAQAARDRDALEAEL LRHE ERSRFL+EA ER  EI+EEVK KMA E ERDRELYAQRAALAEEGQE+ARE+R QLQ EK              DA+RR+II+KFKARE+A+RKNFEA+L++AR
Sbjct:    1 MAVREEMWAQAARDRDALEAELSLRHEAERSRFLEEAGERDSEIVEEVKRKMAEEMERDRELYAQRAALAEEGQEIAREERNQLQAEKESLLRQLKETMEMDDASRRRIILKFKAREHAMRKNFEAELREAR 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V9_ECTSI8.990e-4572.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:268269..272697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012050.1
Exons5
Model size1465
Cds size771
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815956.928965-UTR-P-fluviatile_contig22:268268..2689531622815956.928965-UTR-P-fluviatile_contig22:268268..268953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 268269..268953 -
1693563848.2082393-UTR-P-fluviatile_contig22:268268..2689531693563848.2082393-UTR-P-fluviatile_contig22:268268..268953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 268269..268953 -
1622815957.0026634-UTR-P-fluviatile_contig22:272688..2726971622815957.0026634-UTR-P-fluviatile_contig22:272688..272697Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 272689..272697 -
1693563848.2720697-UTR-P-fluviatile_contig22:272688..2726971693563848.2720697-UTR-P-fluviatile_contig22:272688..272697Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 272689..272697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815956.9419088-CDS-P-fluviatile_contig22:268953..2692271622815956.9419088-CDS-P-fluviatile_contig22:268953..269227Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 268954..269227 -
1693563848.2192576-CDS-P-fluviatile_contig22:268953..2692271693563848.2192576-CDS-P-fluviatile_contig22:268953..269227Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 268954..269227 -
1622815956.954345-CDS-P-fluviatile_contig22:269901..2699931622815956.954345-CDS-P-fluviatile_contig22:269901..269993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 269902..269993 -
1693563848.2292793-CDS-P-fluviatile_contig22:269901..2699931693563848.2292793-CDS-P-fluviatile_contig22:269901..269993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 269902..269993 -
1622815956.9666293-CDS-P-fluviatile_contig22:270632..2707461622815956.9666293-CDS-P-fluviatile_contig22:270632..270746Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 270633..270746 -
1693563848.2389858-CDS-P-fluviatile_contig22:270632..2707461693563848.2389858-CDS-P-fluviatile_contig22:270632..270746Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 270633..270746 -
1622815956.9771774-CDS-P-fluviatile_contig22:271623..2717671622815956.9771774-CDS-P-fluviatile_contig22:271623..271767Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 271624..271767 -
1693563848.2485723-CDS-P-fluviatile_contig22:271623..2717671693563848.2485723-CDS-P-fluviatile_contig22:271623..271767Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 271624..271767 -
1622815956.9920018-CDS-P-fluviatile_contig22:272541..2726881622815956.9920018-CDS-P-fluviatile_contig22:272541..272688Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 272542..272688 -
1693563848.26405-CDS-P-fluviatile_contig22:272541..2726881693563848.26405-CDS-P-fluviatile_contig22:272541..272688Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 272542..272688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4723.1prot_P-fluviatile_contig22.4723.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 268954..272688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4723.1

>prot_P-fluviatile_contig22.4723.1 ID=prot_P-fluviatile_contig22.4723.1|Name=mRNA_P-fluviatile_contig22.4723.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=257bp
MEGAIMAERTRQHREMRLKGNAELKQKVEELKLKLQTERNRMQKDFEAQL
MAVREEMWAQAARDRDALEAELGLRHEEERSRFLDEANERAIEIIEEVKA
KMAAEAERDRELYAQRAALAEEGQELAREDRRQLQMEKDELARQLRETME
KEDATRRKIIIKFKARENALRKNFEAQLKDARDAAAGIPPAPATAAAATK
PTVGAAAKRPRVTTSKLTSSARETHHAAVRSSGAAAPSGGGGGSSIPASA
APTAQR*
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mRNA from alignment at P-fluviatile_contig22:268269..272697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4723.1 ID=mRNA_P-fluviatile_contig22.4723.1|Name=mRNA_P-fluviatile_contig22.4723.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4429bp|location=Sequence derived from alignment at P-fluviatile_contig22:268269..272697- (Porterinema fluviatile SAG_2381)
CGCTCCAGCATGGAGGGGGCTATCATGGCGGAGCGAACAAGACAACACCG
CGAGATGCGACTCAAGGGCAACGCGGAACTGAAGCAAAAAGTCGAGGAGC
TGAAGCTGAAGCTCCAGACCGAGAGAAATCGGATGCAGAAGGACTTCGAG
GCTCAGGTGAGGAGGGTGACAACAATTCGTCGTTCCTGGACCAGTTGAGG
AGGTGACATCGCCGGCGGCCTCACTTCGACAGCTGGGTCAGAAGCGAGTG
CAACTGTCCCTGATCTCCTCTAGCTCCTGGTGAGGTGATACCGGCAGCCA
ATTGAGGCATGAACCCGCCCCCGCCCCCTCCCGTAAAATTGGCATTTCCC
TTCGCTGCCTCGTGCGCGAGGAATACTGTGGATCCAGATCTCCCCAGCCA
GACGTTTTTTTCCACGAAACTCTGGCCCATTTCTTTCTGAGCAAGCGGCG
GGGGCAAGCTTAAAGTAGGCAGTACCCGTTTGTCGTCGGACACCTGCAGC
TACAACAGCTACACGCAATGTTTGCGCGGTCCAACCGCAAAGAGGTTTGC
AGTGTCAATGCGGTCCAATGGCAACAGATTCGTTGTGCAACACGTGCGCA
AGGCCTTCAGCAGCCGTGTTTTGATTTAGCCTGCTGGATATTACTTGGGG
CGCCACATGCGATTAAGCTTGTGCACTCAGTAGCAAGGGGTTTACGACGG
CAGGATACAAGGGCATTTGTGTTGCTCATTCATGGCATCATTCACAGAAC
AGTGCCTCGTCTGCGGTATGCACCGTATGCTGCATCGAATAACTCGCCAA
ACTTTACGGACTCTTCACTATGCAGCGATCCACCCTCACGCGCCCGAGTC
CCCTTGTCTGCGGCCCTACTTGCTGCCATGGTACGTTATTTGCATATGCC
AATGCACAACCTTCCACGGAAAAATTGAAGTTGATGGCGGTGCGAGAGGA
GATGTGGGCGCAGGCGGCCCGGGATAGAGATGCGCTGGAGGCGGAGCTGG
GCCTGAGGCACGAGGAGGAGAGATCGAGGTTCTTGGACGAGGCTAACGAA
CGCGCCATCGAAATTATCGAGGAGGTGAGCGGGCGGTGAATCCATCCATC
GATTTTGTACTCCATCCATCCATCTATCCGTCACCAGACGAAAGGTTTGC
AACCTCCCCCCCCCCCAAGTGGTTGCGTTCACGTCAAACTGGCAAGGTTG
TGTGAGCGTGGCTACGTTGTAGGCGGGTGTTTGGTTATGCATGAGCTCTT
CGCTGGTTTGGAGTATTTGTTTCAGTTGGGATTTCACCTTGTTGGCGTGC
GAACAGCTCACGGTCACCAGTTCTTAGGTCACGTTTTCCTACATTTCGGC
GCCATCGGATGCTCACCGCCCCTTTCAGAAATAATCGCACATGCAGTGGG
GTAGACCGCTTTTCATCGCAGTGGGGATACGAATCCTCCAGACGCATCTT
TTGCAGTGAGTAAAGACGTGCGTATGTGACTGTTTAACCGGCGCGCAAGA
TGTTAGTTGCTCATCGATGAACTGTTGGGGTGACGATGGGATAGAAAGCG
TGTGCCTGGTGGAACCAAAAGTAAGCACTCGTTTCGTGCTGCCGAAGCAT
CTGAGCCTTTGGCTTCTACATATGTGGAAGGGCAGTGGCAGTGTGTCAGT
TCGAAGAGGAGCAGGGCAGTGTTTGGTTGCATCACTGCGGAAAGAGTTTG
ATCGGGGACGGCACTGTTTTTTCCAGAGGTGGCCGTTCGTCACCTGCAGC
ACACATTAGCCATGCTTTTCTCGTATCCTGCTTCGGCGACTATCACGCTA
TCACGCTGCTACCAGCAACCCGATTGCCGCATTATCACGTCCATGCACGC
GCGTGTGTTCGTTCCGGCGTTCTGAACGACCGTTGTAAGCTGCTGTAAAC
TGGTGGCATATCTTGCGTAGCGGGTGACACGCGATCATCCGTTTTGAATA
GGTGAAGGCGAAGATGGCGGCGGAGGCAGAACGGGACCGGGAACTATACG
CCCAGCGGGCGGCGTTAGCAGAAGAGGGGCAGGAACTCGCCCGCGAGGAC
CGGAGACAGCTGCAGGTGGTTATTAGTGGGTCGAAATACACCACAGCAGT
GCTTCCCGAATTTACTCCATCCTTTCACATCGCCTTGCTCTAGTTGTTTG
CCTCTCTGCTAGTCTCTGCTTCGTTGCAGCCTGTCTGGCATGCCAAGACT
TGTGAAACTGCGACGGGATTATCGCAGTGGGAAGGGAAGGGTTGTGCGGT
TTCAACCCTTGGAAATGCTGTCACGTTCCTGGTGCTGTTAAGTGCCGATC
GTCTCGCGGCTCACGCATGCGTCAACAGCAGCAAGAGGTGTTGACGATTG
CGGGAGAGGCTCAGCAGTCCTCTCTTCGATCTTCACACATCATCAGCAAT
CGATAGATTTTCTCGAGAGAGCCACTTGCGACGACCCAAGGCAGGCCTTC
CCGGTGCGGCAGATAAAAGCGGCACAGCACAGGACCTCTGTTGACCTTGA
TCAGTGGTGCCGGTGGTTCAGCTCGGCCGTCGAGCCGTCGTGGTGTCGAC
GTCCTCCTGTCCAGATGTGTATTGTTTCTCTCTCCTCTTTCCAGCTCCTC
AAAAACCAACGAATTTCATGCTGCTTCCCTCCCCTTGTACCGTGCCCCAC
ACACCTGACACTGTGTGCCTCCGCTTGTGTGCCTCCGCTTGCCGCCTCTG
ACAGATGGAGAAAGACGAGCTTGCGCGACAGCTGCGGGAGACGATGGAAA
AGGAAGATGCCACCCGCAGGAAGATCATCATAAAGTTCAAGGCCAGGTGC
GAGGGGGCGTGGAGCGCATGTACTGTAAAACCAGGCTTCTCCCTTCGAGA
ACTTGTCCGTTTTATGGTTTTCCCTCAATTACTATGCTCTCGCCGGTAAT
TTGTTCCCCTACTTGGCGTTATTTCAGGCCCTCTTGCCGTGACCAATGGT
ATCGAATAGCGCAACAGGTTACAGCCGTTTCACGGCATCACGCCAGGCGT
TGATACGATGGGATGGGATGGGTGGTATGTGATGGATGCGACAGGATGTA
TTGGATGAAACGGGACGGGACGAAATGGGATGGAGTAGAATGGGATGGAG
TGGGTCGGGTTGGGTGAGGTAGGTTGGGGTGGGACTGGACGGGATGTGTC
TACCGATGGGGTGTATTTGAACGATGGGAGATGAAGCTCGACCCCGTGTC
GAGCCGAAAAGTTTAGCTGCAGGCCGTCACAATAAAATAGGCTTTCAACA
GCGTTTCCGGAACGTTCCGTCATCGATCCCACCGACAACATGAGGGGTCT
CGCTTCACCCACCTGCGTACAGCAAAAGCACAGGACAGAAGTGCAACGCA
CGCCGTTACCTGACAACAGTCATGTCCCATGAACGGGCACTTTATTTGCT
ATACTTTCACGAACGAATCTGTGATTCCGCCTTTCTCCTTCACGAATTAA
TGAATGCTTTTTCTCCGCAGGGAAAACGCTCTCCGAAAAAACTTCGAGGC
TCAGCTGAAGGACGCTAGGGATGCCGCCGCCGGCATCCCGCCGGCGCCCG
CAACAGCAGCAGCAGCAACAAAGCCAACGGTGGGGGCGGCCGCTAAACGG
CCACGAGTGACGACATCCAAGCTTACTTCCTCCGCCAGGGAGACGCACCA
TGCTGCCGTCAGGTCTTCAGGTGCAGCGGCACCATCCGGTGGCGGCGGTG
GCAGTAGCATCCCGGCGAGTGCGGCACCCACCGCACAGCGTTGACGTTCG
GTTAGTGTTGTCAAGGCCAGGATCTTTTTGACGAGCGTCAGTGACGTTTG
TCACTTCGTGAAGCTCGAAGACATTTCCATTTAGCGGACGAACACCACGA
CGATTTAGGTCGTGGTGTTGTTCGATTCACTCAGGTAGACTGAAATGGGG
AGAAAAGCCGCACCATCATCGACGGCGTCTTGGGGAAAGTGCCCTGGTAT
AGTGCAGCAGCAGTGGATGCGATTCGGTGGATGTCGTCGATGTTTGTGGC
GTGTTCACAAGGGCATTTTTGGAAGCTCTACTGCCGCGTGGGCATCTCAA
TTTTTTCGACTCCAGCAGTGGTGACACGTTGGGGTTTTGGCGCGGGTCTT
CCCGCTTGAATGTAGAGACCCAAGGAATGTGGTGCTTTGCATTGCACTGC
GAAAACCATACTCTCGTACCAACCCAAGTCTGGAGCCAGTCGAACTTTGC
CCTCCGTCACACGCTCCACTCTTGGCTTCGTGGGCGTGGGTCATCCCGTG
ACGTTTTGCTGATCAATATATAATGTGCTTGCAGCAGCCCTTGGAGGGCA
TGTTTTTTTTCATGAAAGTTTGCTCTTGCTGCTTATTCGGGTCGAAGTCC
ACGTTCGAGACTCAAGCCGCTCCTGAAGACAAAGTTCGCCTTTGAACCTG
GGTCATTGGACTCATCACGCCTCGACGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:268269..272697-

>mRNA_P-fluviatile_contig22.4723.1 ID=mRNA_P-fluviatile_contig22.4723.1|Name=mRNA_P-fluviatile_contig22.4723.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1542bp|location=Sequence derived from alignment at P-fluviatile_contig22:268269..272697- (Porterinema fluviatile SAG_2381)
ATGGAGGGGGCTATCATGGCGGAGCGAACAAGACAACACCGCGAGATGCG
ACTCAAGGGCAACGCGGAACTGAAGCAAAAAGTCGAGGAGCTGAAGCTGA
AGCTCCAGACCGAGAGAAATCGGATGCAGAAGGACTTCGAGGCTCAGATG
GAGGGGGCTATCATGGCGGAGCGAACAAGACAACACCGCGAGATGCGACT
CAAGGGCAACGCGGAACTGAAGCAAAAAGTCGAGGAGCTGAAGCTGAAGC
TCCAGACCGAGAGAAATCGGATGCAGAAGGACTTCGAGGCTCAGTTGATG
GCGGTGCGAGAGGAGATGTGGGCGCAGGCGGCCCGGGATAGAGATGCGCT
GGAGGCGGAGCTGGGCCTGAGGCACGAGGAGGAGAGATCGAGGTTCTTGG
ACGAGGCTAACGAACGCGCCATCGAAATTATCGAGGAGTTGATGGCGGTG
CGAGAGGAGATGTGGGCGCAGGCGGCCCGGGATAGAGATGCGCTGGAGGC
GGAGCTGGGCCTGAGGCACGAGGAGGAGAGATCGAGGTTCTTGGACGAGG
CTAACGAACGCGCCATCGAAATTATCGAGGAGGTGAAGGCGAAGATGGCG
GCGGAGGCAGAACGGGACCGGGAACTATACGCCCAGCGGGCGGCGTTAGC
AGAAGAGGGGCAGGAACTCGCCCGCGAGGACCGGAGACAGCTGCAGGTGA
AGGCGAAGATGGCGGCGGAGGCAGAACGGGACCGGGAACTATACGCCCAG
CGGGCGGCGTTAGCAGAAGAGGGGCAGGAACTCGCCCGCGAGGACCGGAG
ACAGCTGCAGATGGAGAAAGACGAGCTTGCGCGACAGCTGCGGGAGACGA
TGGAAAAGGAAGATGCCACCCGCAGGAAGATCATCATAAAGTTCAAGGCC
AGATGGAGAAAGACGAGCTTGCGCGACAGCTGCGGGAGACGATGGAAAAG
GAAGATGCCACCCGCAGGAAGATCATCATAAAGTTCAAGGCCAGGGAAAA
CGCTCTCCGAAAAAACTTCGAGGCTCAGCTGAAGGACGCTAGGGATGCCG
CCGCCGGCATCCCGCCGGCGCCCGCAACAGCAGCAGCAGCAACAAAGCCA
ACGGTGGGGGCGGCCGCTAAACGGCCACGAGTGACGACATCCAAGCTTAC
TTCCTCCGCCAGGGAGACGCACCATGCTGCCGTCAGGTCTTCAGGTGCAG
CGGCACCATCCGGTGGCGGCGGTGGCAGTAGCATCCCGGCGAGTGCGGCA
CCCACCGCACAGCGTTGAGGAAAACGCTCTCCGAAAAAACTTCGAGGCTC
AGCTGAAGGACGCTAGGGATGCCGCCGCCGGCATCCCGCCGGCGCCCGCA
ACAGCAGCAGCAGCAACAAAGCCAACGGTGGGGGCGGCCGCTAAACGGCC
ACGAGTGACGACATCCAAGCTTACTTCCTCCGCCAGGGAGACGCACCATG
CTGCCGTCAGGTCTTCAGGTGCAGCGGCACCATCCGGTGGCGGCGGTGGC
AGTAGCATCCCGGCGAGTGCGGCACCCACCGCACAGCGTTGA
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