mRNA_P-fluviatile_contig21.4673.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4673.1
Unique NamemRNA_P-fluviatile_contig21.4673.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig21.4673.1 vs. uniprot
Match: A0A6H5KWN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.160e-33
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:   40 MPRLGQDTNSAHAYPDRANANLRGSWIRQLLFTSVCTFVLYKIVFTDYKSATKQGMASKGLSEAAQEKIIPKTTREKARDQYMAKLSAGEKLLKLQWEVGNLTNAVNELQQLVVEQNGATIKHPISLGEP 429
            MPRLG D N A AYPDR + NLRGSW+R+L  T V T +LY +VF DYK+ TK GM+++G++    E IIPKT  EK ++    K +  EK   L ++VGNLTNAV ELQ+L+VE NG TI+HP++L EP
Sbjct:    1 MPRLGDDQNMATAYPDRVSTNLRGSWLRKLAMTVVGTLLLYNVVFKDYKNQTKTGMSNRGIAGDI-ETIIPKTRAEKLKEALETKRTMAEKNEALHYQVGNLTNAVIELQELLVETNGVTIQHPVTLPEP 129
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BLAST of mRNA_P-fluviatile_contig21.4673.1 vs. uniprot
Match: D8LJ18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ18_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.930e-30
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:   40 MPRLGQDTNSAHAYPDRANANLRGSWIRQLLFTSVCTFVLYKIVFTDYKSATKQGMASKGLSEAAQEKIIPKTTREKARDQYMAKLSAGEKLLKLQWEVGNLTNAVNELQQLVVEQNGATIKHPISLGEPGNEEG 444
            MPRLG D N A AYPDR + NLRGSW+RQL  T V T +LY + F DYK+ TK GM+++G++    E IIPKT  E  ++    K +  EK   L ++VGNLTNAV ELQ+++VE NG TI+HP++L EP  EEG
Sbjct:    1 MPRLGDDQNMATAYPDRVSTNLRGSWMRQLAMTVVGTLLLYNVFFKDYKNETKTGMSNRGIAGDI-ETIIPKTRAEIIKEAKENKKTMKEKNEALHYQVGNLTNAVIELQEVLVETNGVTIQHPVTLPEP--EEG 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWN6_9PHAE7.160e-3354.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ18_ECTSI1.930e-3053.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:2281962..2285424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002320.1
Exons3
Model size1564
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4673.1prot_P-fluviatile_contig21.4673.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 2282713..2285385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815952.6526868-UTR-P-fluviatile_contig21:2281961..22827121622815952.6526868-UTR-P-fluviatile_contig21:2281961..2282712Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2281962..2282712 -
1693563842.9317045-UTR-P-fluviatile_contig21:2281961..22827121693563842.9317045-UTR-P-fluviatile_contig21:2281961..2282712Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2281962..2282712 -
1622815952.6995344-UTR-P-fluviatile_contig21:2285385..22854241622815952.6995344-UTR-P-fluviatile_contig21:2285385..2285424Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2285386..2285424 -
1693563842.9708643-UTR-P-fluviatile_contig21:2285385..22854241693563842.9708643-UTR-P-fluviatile_contig21:2285385..2285424Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2285386..2285424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815952.6664133-CDS-P-fluviatile_contig21:2282712..22832201622815952.6664133-CDS-P-fluviatile_contig21:2282712..2283220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2282713..2283220 -
1693563842.9424946-CDS-P-fluviatile_contig21:2282712..22832201693563842.9424946-CDS-P-fluviatile_contig21:2282712..2283220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2282713..2283220 -
1622815952.6771705-CDS-P-fluviatile_contig21:2283910..22840291622815952.6771705-CDS-P-fluviatile_contig21:2283910..2284029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2283911..2284029 -
1693563842.9514084-CDS-P-fluviatile_contig21:2283910..22840291693563842.9514084-CDS-P-fluviatile_contig21:2283910..2284029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2283911..2284029 -
1622815952.6902695-CDS-P-fluviatile_contig21:2285238..22853851622815952.6902695-CDS-P-fluviatile_contig21:2285238..2285385Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2285239..2285385 -
1693563842.9611356-CDS-P-fluviatile_contig21:2285238..22853851693563842.9611356-CDS-P-fluviatile_contig21:2285238..2285385Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2285239..2285385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4673.1

>prot_P-fluviatile_contig21.4673.1 ID=prot_P-fluviatile_contig21.4673.1|Name=mRNA_P-fluviatile_contig21.4673.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=258bp
MPRLGQDTNSAHAYPDRANANLRGSWIRQLLFTSVCTFVLYKIVFTDYKS
ATKQGMASKGLSEAAQEKIIPKTTREKARDQYMAKLSAGEKLLKLQWEVG
NLTNAVNELQQLVVEQNGATIKHPISLGEPGNEEGGGDGAVGESEAGDPP
APMLRGGEEEDAGNPSEVGHSNGESTNTVGGGGDGGGSGSRRLSQGAGGE
IGGGEGQGLAMYEDAATRPEGKGGQRGKRWQRQQQERRHPEGSLREEGEG
WTRAENP*
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mRNA from alignment at P-fluviatile_contig21:2281962..2285424-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4673.1 ID=mRNA_P-fluviatile_contig21.4673.1|Name=mRNA_P-fluviatile_contig21.4673.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3463bp|location=Sequence derived from alignment at P-fluviatile_contig21:2281962..2285424- (Porterinema fluviatile SAG_2381)
TTATTTCCTTTCTCTATCACAGGAGCTATCGCGGTTGCGATGCCTCGACT
AGGACAAGACACGAACAGCGCCCACGCATATCCCGACCGGGCCAATGCGA
ACCTACGGGGCAGCTGGATTCGGCAGCTACTTTTCACCTCGGTTTGCACT
TTCGTGCTGTACAAAATCGTCTTCACGGACTATAAGGTGAGCGACCATCG
GTGCGGCGCTACGGATGTTGTAGGAGGCCCCTTTCATAAATACATTTCCT
CTCCAAAAGAGCGCCTTGATGAGGGCCATTTTCGCCGCACTGCTGTTGCA
CCTGGGCAAACCGCTCTCCAGATTTCCATGCGCACGCCGTTCACGAACAT
CCAAATTCAAACATCCTACTTGTACACAAAACGAGAGTGCGCGTTGGATG
AGTCATTATCCCAGTCGACGTGGCTCCGATGAAAGCCTGAACACTCGCTC
CACGCACACACATCATGAACAGCAGCAGCAATAGTGCGCTGAAAGGGTCA
AAACTTGCCGACGATGGGAACACGAATAGGGCCGAGATCCTGTCATGACG
TTTCCTACCCCTGAAAAAATCTGTGGGTTTTTTTTCCCAAGAAAAAATTG
CCAAGCTCGGTGATCGGCTGTTCATCATCGTCGGAGGGAAAACAGCAAGC
AACCACACACACGCGCGCGCGCATTGAGCACCCGGTACCAAAACATGGGT
ACCCGCTTGATGTAGATGGTACAAAACCAGCGGATTCGCGGTATTTCTCG
GCCGTTCAGGCAGGAATCCGGGGATCCCGTCGAGAGTTTGCCTCCCAATT
GTAAGATGCCAATGATACAGCAAATGGACTTGGGGACTTGGGGGGGGGGA
TAACGTCCCCTGTTCTCAAGGCACTCTTGATTGCAGCACTCAAGCGCTTT
TTTTTGGCATCGAGCTCCCAGACTGAAGTCGCCGGCCCCAGCAACGGTCC
ATTGAGCATCGATTACGACAGGGCGGCCGCTGCCGGGGAACAGATGTACA
CTCCCTCCATCCACGTTTGTTCCCTTGTTTGTTGATGTTTCCGCAACCTT
GAAGCCAATTATAATCTTGTCCCGCGTTTCAATGCGCGGGCTCCGGCCTG
ATGGCTTCGTCCGCGGACCGCGTATCCCGGAGTCGCCCGTTGTCGAGCCT
GCCGGTGGGGCCGACGCGAGGCCGGCTCTTGGGCACTGCCGCTACTGTCT
GCGCCGCTGAGGGCGGGGGGGGGCGAGAAAATTTTGCTGTGTTTTGCGAC
GCTTTTTCTGCGATGGTTAGTCCTCTCCGATCAGCGTTTGAAGACACGGT
CTCTTTTCATCACACCCACCACGCTATTCGAGGCAAAATGTTTGCAGACC
CCTACTTCCACCCCCACGGATTACGTGTCGGCTCTGATGTTGCAGAGTGC
GACGAAGCAGGGCATGGCCTCAAAAGGCCTCTCAGAGGCCGCACAGGAGA
AGATCATCCCCAAGACCACGAGGGAGAAGGCGCGCGACCAGTACATGGCC
AAGCTTTCGGCCGGGTGAGCATGAGCGTTTATTTTTGTCTCATCGCGGTC
TCATTCTTATCTCGTCGAGCTTGTGGTCACCGCACATTGTCTTTCTCGGT
GGTGTGTATTAGTCTCTGACGCCGTCCTCCGTATCATCCGGCGGCCAGGC
TGTGTCGACAGGATTTGTGGTGTGTACACATCAATGGCGACGGCTGAACA
GGACGAGAGCCACAAGCAGCGTGTTCTGCTTAAATGGCTGTGGTGGTACC
AATTATCGGCAACACGGGCCGATGCCGACGATTTCTCGACGCTTTTGCCA
TCACCTCGACCCGACACTCGCACCCAAAGTGCATGTCACGAGTAATACAT
GTAATAAATTTCCCTCAAATTGTCGGAAGCATCGCTTCTATGTCGACCCT
TTACACTGTCCATCAATGTACCACCTATCGATCAAACATCGCCATACATT
GCTGCGCCTTTGGACAGCTCCGTCCCCAGCCGCCTGCGTACCTTACTTCA
AAAAATCAGATATGAAGACTGCATAGCGCACAGCTCAGCTTCCCCGGCTC
TCCATCCCGCTGGGTGTCACGCAAGCGAGCCCCCCTCGCCCTTGACACCG
CTTGTCCGAATCTCGGTCGTTTTCGTTGCGCGGCCGTCCTCTTGCTGACG
GCACGTGGGCCAAACCGCGCCTGCCCGCAAAATCAAATGTAAAATATCCT
ACAGGGAAAAGTTGCTGAAACTGCAATGGGAGGTGGGCAACCTGACTAAC
GCGGTGAACGAGCTCCAGCAACTGGTAGTGGAGCAAAACGGGGCCACCAT
CAAGCACCCAATTTCGCTTGGCGAACCCGGAAACGAGGAAGGCGGCGGAG
ACGGCGCAGTCGGTGAGAGCGAGGCTGGGGATCCCCCCGCGCCGATGCTG
AGGGGGGGGGAAGAAGAGGACGCGGGAAACCCGTCCGAAGTCGGGCACAG
TAATGGCGAGTCTACTAACACGGTCGGCGGCGGCGGCGACGGCGGCGGAT
CAGGCTCTCGGCGTTTATCGCAGGGCGCGGGGGGAGAAATCGGTGGGGGA
GAAGGACAGGGGTTGGCGATGTACGAAGATGCTGCGACCCGGCCAGAGGG
CAAGGGAGGTCAGCGGGGGAAGCGGTGGCAGCGGCAGCAGCAGGAACGAA
GGCATCCGGAAGGAAGCTTGCGGGAGGAAGGAGAAGGCTGGACCAGAGCA
GAAAATCCATGATCGCTGAGAAGTGTTGTCCCAGAAAAGCGGAATGGAAG
GCCGGGTGGGACAGGAGGCGTTCGTCCTGAGGCTTTGCCCGAGCCAGGGG
GCTACCTCATTATCCCCCAAATTGACGGCCATGAGCGGTGGCTTTTGTCC
TGTTGTATTTATGGGCGCCGGCTTGCACGCAGCTAGCTACCTGGGAATCA
ACCAGCCTGCATCTTTTTAGGCAGCCGATGTGGCAATGGGCTGGCTTGCG
CTTGACAAGTGCAGTGTTTTCATTTTGCCCGCCATGCCCATTCGGATTTA
AGGTGTTGTTCCTCTCCCTCATGCGTTAGAGTTTTTTTATGTGCAACGAG
CCCAAAGCTCTTCCGAGCCTCGCGAAGTCTTGTAGACAGTTTTGTTGAAG
TGAAGAAGCTCGCCCTCCAAATGGGCCGTGGTTTCACAGTTTTCTTGAAT
CGGCTGAGCATAGTTTGGGGGTCTACTTTCACCCACCCCTGACGTACGAA
TAAATCGTGGCCGACATCGTTCATTCCTTCCCATGAAAGTTGCGCCCATG
GTCGTGATGCGATGTGCAGCGACCACCATCGCGTGTATGTACCGTGTATG
TGAAATAAAGGGGTAGGTTGATGTTTGTCGTTTTTTGCGGGTGCGTTGTG
TCATTTCAATTAGTAGGACTCTCCCTTCGGTTACTGAGTCCAATCATATC
ATTTTTCCCAGCCCCAATGAAAGTCCGTTTTGCCCCGTGGCCACCTTTAA
GTGCATCCCTACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:2281962..2285424-

>mRNA_P-fluviatile_contig21.4673.1 ID=mRNA_P-fluviatile_contig21.4673.1|Name=mRNA_P-fluviatile_contig21.4673.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1548bp|location=Sequence derived from alignment at P-fluviatile_contig21:2281962..2285424- (Porterinema fluviatile SAG_2381)
ATGCCTCGACTAGGACAAGACACGAACAGCGCCCACGCATATCCCGACCG
GGCCAATGCGAACCTACGGGGCAGCTGGATTCGGCAGCTACTTTTCACCT
CGGTTTGCACTTTCGTGCTGTACAAAATCGTCTTCACGGACTATAAGATG
CCTCGACTAGGACAAGACACGAACAGCGCCCACGCATATCCCGACCGGGC
CAATGCGAACCTACGGGGCAGCTGGATTCGGCAGCTACTTTTCACCTCGG
TTTGCACTTTCGTGCTGTACAAAATCGTCTTCACGGACTATAAGAGTGCG
ACGAAGCAGGGCATGGCCTCAAAAGGCCTCTCAGAGGCCGCACAGGAGAA
GATCATCCCCAAGACCACGAGGGAGAAGGCGCGCGACCAGTACATGGCCA
AGCTTTCGGCCGGAGTGCGACGAAGCAGGGCATGGCCTCAAAAGGCCTCT
CAGAGGCCGCACAGGAGAAGATCATCCCCAAGACCACGAGGGAGAAGGCG
CGCGACCAGTACATGGCCAAGCTTTCGGCCGGGGAAAAGTTGCTGAAACT
GCAATGGGAGGTGGGCAACCTGACTAACGCGGTGAACGAGCTCCAGCAAC
TGGTAGTGGAGCAAAACGGGGCCACCATCAAGCACCCAATTTCGCTTGGC
GAACCCGGAAACGAGGAAGGCGGCGGAGACGGCGCAGTCGGTGAGAGCGA
GGCTGGGGATCCCCCCGCGCCGATGCTGAGGGGGGGGGAAGAAGAGGACG
CGGGAAACCCGTCCGAAGTCGGGCACAGTAATGGCGAGTCTACTAACACG
GTCGGCGGCGGCGGCGACGGCGGCGGATCAGGCTCTCGGCGTTTATCGCA
GGGCGCGGGGGGAGAAATCGGTGGGGGAGAAGGACAGGGGTTGGCGATGT
ACGAAGATGCTGCGACCCGGCCAGAGGGCAAGGGAGGTCAGCGGGGGAAG
CGGTGGCAGCGGCAGCAGCAGGAACGAAGGCATCCGGAAGGAAGCTTGCG
GGAGGAAGGAGAAGGCTGGACCAGAGCAGAAAATCCATGAGGAAAAGTTG
CTGAAACTGCAATGGGAGGTGGGCAACCTGACTAACGCGGTGAACGAGCT
CCAGCAACTGGTAGTGGAGCAAAACGGGGCCACCATCAAGCACCCAATTT
CGCTTGGCGAACCCGGAAACGAGGAAGGCGGCGGAGACGGCGCAGTCGGT
GAGAGCGAGGCTGGGGATCCCCCCGCGCCGATGCTGAGGGGGGGGGAAGA
AGAGGACGCGGGAAACCCGTCCGAAGTCGGGCACAGTAATGGCGAGTCTA
CTAACACGGTCGGCGGCGGCGGCGACGGCGGCGGATCAGGCTCTCGGCGT
TTATCGCAGGGCGCGGGGGGAGAAATCGGTGGGGGAGAAGGACAGGGGTT
GGCGATGTACGAAGATGCTGCGACCCGGCCAGAGGGCAAGGGAGGTCAGC
GGGGGAAGCGGTGGCAGCGGCAGCAGCAGGAACGAAGGCATCCGGAAGGA
AGCTTGCGGGAGGAAGGAGAAGGCTGGACCAGAGCAGAAAATCCATGA
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