mRNA_P-fluviatile_contig21.4667.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4667.1
Unique NamemRNA_P-fluviatile_contig21.4667.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig21.4667.1 vs. uniprot
Match: A0A6H5J6Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q7_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.820e-47
Identity = 140/294 (47.62%), Postives = 183/294 (62.24%), Query Frame = 2
Query: 1436 VSPYVFHTHAARVFSDISAALRRAQEASADVVARLEASQMAKEHERHLRATEARRYVARLKELQELMKARAQREVEGALARKSLNRRLGEEISRSAQLEKRLADTRDELQRLRQDFESERCALEEKWRSTLDQAIVAAREEERSKANGKVEAFTIKRLRSLSSEVTELKRKLKSLQAENISLLEALGSRISPPPFPPTSC----LSR-----RRAKPTGSEMEEEEAVVSADGEASSCSGAD--PLLHSGTGLADVVSGLADR-------IKRATSEHFSGVGLQQQRVSSRQR 2263
            VSPYVFHTHA RVFS+IS ALRRAQ+ASA+V+ARLEAS+ A+E +R +RA EAR YV+RL+ELQ LMKAR +RE+EG                      + LAD  D+ +RLR+ F SE+ ALE+ WRSTLDQA+V+ARE ERSKA+ KVE   +++LRSLS+EV  LK KLK LQ EN +  EAL +R   P   P       L R     RRAK   S +    A  +A  E SS   A+  P     + L++ +SG+++R       ++++ SEH SG+G    RVS R+R
Sbjct:   26 VSPYVFHTHAPRVFSEISEALRRAQDASAEVMARLEASETAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIEGXXXXXXXXXXXXXXXXXXXXXXQGLADAEDKQRRLRRKFASEKKALEQWWRSTLDQAVVSAREAERSKASAKVEGAMVRKLRSLSTEVATLKGKLKLLQEENATYAEALRARTPRPSSGPLKVDGDRLPRSESFGRRAKSEISRLSASAAATAAMDERSSADSAENSPRSKVSSTLSEFISGISERGLDLAVRLRKSISEHASGLGFSP-RVSRRRR 318          
BLAST of mRNA_P-fluviatile_contig21.4667.1 vs. uniprot
Match: D8LHR3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR3_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.820e-44
Identity = 137/294 (46.60%), Postives = 178/294 (60.54%), Query Frame = 2
Query: 1436 VSPYVFHTHAARVFSDISAALRRAQEASADVVARLEASQMAKEHERHLRATEARRYVARLKELQELMKARAQREVEGALARKSLNRRLGEEISRSAQLEKRLADTRDELQRLRQDFESERCALEEKWRSTLDQAIVAAREEERSKANGKVEAFTIKRLRSLSSEVTELKRKLKSLQAENISLLEALGSRISP---PPFP------PTSCLSRRRAKPTGSEMEEEEAVVSADGEASSCSGAD--PLLHSGTGLADVVSGLADR-------IKRATSEHFSGVGLQQQRVSSRQR 2263
            VSPYVFHTHA RVFS+IS ALRRAQ+ASA+V+ RLEAS+ A+E +R +RA EAR YV+RL+ELQ LMKAR +RE+E                         LAD  D+ +RLR+ F SE+ ALE+ WRSTLDQA+V+ARE ERSKA+ KVE   ++RLRSLS+EV  LK KLK LQ EN +  EAL +R  P    P        P S    RRAK   S +    A  +A  E S+    +  P     + L + +SG+++R       ++++ SEH SG+G    RVS R+R
Sbjct:   26 VSPYVFHTHAPRVFSEISEALRRAQDASAEVMTRLEASETAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIEXXXXXXXXXXXXXXXXXXXXXXXXGLADAEDKQKRLRRKFASEKKALEQWWRSTLDQAVVSARETERSKASAKVEGAMVRRLRSLSTEVATLKGKLKLLQEENATYAEALHARTPPLSSGPLKDGRDRLPRSGSFGRRAKSEISRLSASAAAAAAMDERSTAGSEENSPRSKVSSTLTEFISGISERGLDLAVRLRKSISEHASGLGFSP-RVSRRRR 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6Q7_9PHAE4.820e-4747.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR3_ECTSI1.820e-4446.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:2215229..2221634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_002740.1
Exons7
Model size2972
Cds size1650
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4667.1prot_P-fluviatile_contig21.4667.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 2215229..2220313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815951.8102968-CDS-P-fluviatile_contig21:2215228..22160571622815951.8102968-CDS-P-fluviatile_contig21:2215228..2216057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2215229..2216057 -
1693563842.3180268-CDS-P-fluviatile_contig21:2215228..22160571693563842.3180268-CDS-P-fluviatile_contig21:2215228..2216057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2215229..2216057 -
1622815951.8227715-CDS-P-fluviatile_contig21:2216375..22165541622815951.8227715-CDS-P-fluviatile_contig21:2216375..2216554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2216376..2216554 -
1693563842.327103-CDS-P-fluviatile_contig21:2216375..22165541693563842.327103-CDS-P-fluviatile_contig21:2216375..2216554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2216376..2216554 -
1622815951.8383172-CDS-P-fluviatile_contig21:2216865..22169581622815951.8383172-CDS-P-fluviatile_contig21:2216865..2216958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2216866..2216958 -
1693563842.3376105-CDS-P-fluviatile_contig21:2216865..22169581693563842.3376105-CDS-P-fluviatile_contig21:2216865..2216958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2216866..2216958 -
1622815951.8516538-CDS-P-fluviatile_contig21:2217223..22173161622815951.8516538-CDS-P-fluviatile_contig21:2217223..2217316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2217224..2217316 -
1693563842.3473809-CDS-P-fluviatile_contig21:2217223..22173161693563842.3473809-CDS-P-fluviatile_contig21:2217223..2217316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2217224..2217316 -
1622815951.8612027-CDS-P-fluviatile_contig21:2217862..22179471622815951.8612027-CDS-P-fluviatile_contig21:2217862..2217947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2217863..2217947 -
1693563842.3557057-CDS-P-fluviatile_contig21:2217862..22179471693563842.3557057-CDS-P-fluviatile_contig21:2217862..2217947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2217863..2217947 -
1622815951.872081-CDS-P-fluviatile_contig21:2218412..22185431622815951.872081-CDS-P-fluviatile_contig21:2218412..2218543Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2218413..2218543 -
1693563842.3633158-CDS-P-fluviatile_contig21:2218412..22185431693563842.3633158-CDS-P-fluviatile_contig21:2218412..2218543Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2218413..2218543 -
1622815951.8830755-CDS-P-fluviatile_contig21:2220073..22203131622815951.8830755-CDS-P-fluviatile_contig21:2220073..2220313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2220074..2220313 -
1693563842.3769412-CDS-P-fluviatile_contig21:2220073..22203131693563842.3769412-CDS-P-fluviatile_contig21:2220073..2220313Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2220074..2220313 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815951.8935373-UTR-P-fluviatile_contig21:2220313..22216341622815951.8935373-UTR-P-fluviatile_contig21:2220313..2221634Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2220314..2221634 -
1693563842.385061-UTR-P-fluviatile_contig21:2220313..22216341693563842.385061-UTR-P-fluviatile_contig21:2220313..2221634Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2220314..2221634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4667.1

>prot_P-fluviatile_contig21.4667.1 ID=prot_P-fluviatile_contig21.4667.1|Name=mRNA_P-fluviatile_contig21.4667.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=550bp
MMGWNGIGSDRIGSDGMGWNGTELDRTESDGRARTPCSVSPYVFHTHAAR
VFSDISAALRRAQEASADVVARLEASQMAKEHERHLRATEARRYVARLKE
LQELMKARAQREVEGALARKSLNRRLGEEISRSAQLEKRLADTRDELQRL
RQDFESERCALEEKWRSTLDQAIVAAREEERSKANGKVEAFTIKRLRSLS
SEVTELKRKLKSLQAENISLLEALGSRISPPPFPPTSCLSRRRAKPTGSE
MEEEEAVVSADGEASSCSGADPLLHSGTGLADVVSGLADRIKRATSEHFS
GVGLQQQRVSSRQRCGDEKWGGDDDDDDDDDGDDGDIVGGGVHPPAEPML
QHRRRRRRQQLPPTANTAAAAGGAKTARSVERAKPPGDEYRPAPDIPANL
FGEEAPREFSGGGGGNDSIRGGRRRGLGSLGSPFVGGAPGGVPALKGSHL
VPGELISAVNTLRSSSRWQHQRPLGGSCSGSGNCKSGADSNVSSIGALMA
SGEFFPAEVEVKRRRGFATTTRRKREFAGHSGGARAAREETGRARDASGV
back to top

mRNA from alignment at P-fluviatile_contig21:2215229..2221634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4667.1 ID=mRNA_P-fluviatile_contig21.4667.1|Name=mRNA_P-fluviatile_contig21.4667.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6406bp|location=Sequence derived from alignment at P-fluviatile_contig21:2215229..2221634- (Porterinema fluviatile SAG_2381)
TCAAGTGACTCAGCCTGGTCGCAATCGACCCGCCTGCATCTTCGACCGTC CGAACTTCTTGCCGGGGCGTTCAATTTCAAAAGGCAGGCGGCGCGAAAAT AGCTTTATTCGTTGTTCGAATTTTCTATCCCTGAGCGCTCAAGAATCTCG CCGGTGAAATGACAGCAGCCACTTGAGCCACGTGGCTGTCGCTCACATGA GACTCGACGAGGTAGGGTTTGTTCCAATCGATGCGAACGTTGAATCTTCA CAAGGGCTTGGATCTCAGCGGCGGCTGCTGTGGACGATATAGACTAACCG TGATCTGTTGAATTCGTGGCGAATATGAGGGATGAGGGCAAGGATGAGTG TCGTGCTTGCCTGTGTGAAAGCGAAATTGCCGAACCTTTGCCGTCCCTTG GAGAGTATCGAAAGCAAGAGCATGACCGAAGAAACCAGCGGACCCTTCCG GCTCCGTTTGCCGTCGTATCACTTTGGCCTCCTGTTCTTTATAACACCCT CCACGATTGGTTCTATTCCCCGCGCGGAATCATCTTCGTCTCGATCAAAC CCAACCTCCCCACCGAACAAGCAAGAAACGCTTTGCCAATTCAAATGAAC CTCGATTCGTTTCCGTTTGTCGAGGCAGCAGGTGTGTGTGCGCGCATCGA GGGCGGAGGGCTACCCTCCCGCTGCTGAGCCCGCCGCACACGGCGACAAG TATCGCAGGTGATGGTCCCCGTCATCATAGCCCTCATCACTGCCAGGGGC GAAGCTCGGTGTCAAAGACCCGTGGCCTCTTGCATGTTCGCCTTGCCTTT TCTCGGGTGACGCCGACGACCGGACGAGCGGTAAATTAGCAGGCCTAAGG TCGCGAAGCACAGAAGGAGGACAGAGGCAGAGATAAATGGACAAAGAGAG GAGCGTCGTTGGCCATGCCCCTGCCCCCGAGGAAAGGTTCGCCTACGCCG CCTCGGAAGTTTTCGCCATGTGAGTCGCCGGTAATTTACCACACACTCAC GAGACGTAACAGGTGATGCAAAATTTCGATGATATTGATCACATCGAGGC AAAAACAGACGAGACGTACTTCTCAAACTAGCATGGAAGAAGCGAAACGA CGAGGTCGAGGGAAGGTCGGAATCAGGCGACAATTGTTTGTGTTTTCCCA CAAAAAGTTTGTGGAGCCTTGAGACAAGGTTTGAGGAGAGAAATCGCAAA CGATCCTAAACACCAAACACTCGGAGGGGAAGTTCTCACCCGTCACCGCA CTCACGATCCTCCCAGGCCTCATCCCCCCCCCCCGCATAATTCGCACTGC GAATGCGGTTCTTTTCTTCGCATGATGGGATGGAATGGGATCGGATCGGA TCGGATCGGATCGGATGGAATGGGATGGAACGGAACGGAACTGGATCGGA CGGAATCGGATGGCCGCGCGCGTACGCCCTGCAGCGTCTCGCCGTACGTG TTCCACACCCACGCCGCGAGGGTCTTCTCGGACATTTCCGCGGCTCTGCG GAGAGCCCAGGAGGCCAGCGCGGATGTCGTCGCCCGCCTGGAGGCGTCCC AGATGGCCAAGGTAAATTAAAATGTTGGCGGGGCAGGAGGATGGATGGTC CTTGGCTTGTGCAACTGTTGTTACAGCTGGGTTTCACCGTGGTAACGAGG CGTTGTGACGTGCCGATGTGGTGGCGTCAAGCGTGCTTCTACGACCAGCT GGGGCTCAACGTCTCCGTTTCATGATAAATTTTACTCATTTGCTCGTGGT CAACAAACAGTGCTTCGCGCTGTCCGCAGAACTTATCTGAACACAACTTC ATAAACTCGGGCGATGTCTGTGCAGCGTCAGCCGTGTCGCAGATGGTTCT CCAAGCCTTATGAAAAACACGATGCAATACCTCAGCGGCTCTCCACAGAT CCAACTTTTTCTATGCCAAACTCCGAGCAGCAAGGCGTGAGGGCTCTGCG GAACTAAAAACACCCTTCGACAAAACAAATGCCGCAATCGCTGCGAGCAG ATCTTGCCTCCGCCACAATCCCCCTAATTTCTATCGAAAAGGAAAACGCG TCGTAGATTTGACCGATTACAACCAACTCTTGCACACTTAAGCACAGCAT CAAGACGAAGTACACCAAGAGCTGCAGCGAATGATGTAGCGTAGCGCGAA GGAGAGACACATTTTGCCCGAAGATCGCGTTCACGTGCATTCGCCGTGCT TACGTTGCCATGACGAGGAATACACGGCAACAGTCCTATGCGATGGCTTG AGCTTTTGCGGTTCAGCAGCACCTTGAGTTATGCTGCATCACGCACTATG TACAGAGAACGTGTGATGCACGCACTGCCCATTTTTGCGTCTTCAATGTA AGTCTATTAGAAGGAAAATCATGCACAGCGTGCACAGGTGTCCAGCTTTC GTTGTCGTGGGCAGATTTCGGATGCAAAGCTTGTTTCTATTTGCCGACTC TGCAGTTCTGTAGCACTTTGAATTGCGCTGCACCACGCAGCTTGGACCGA GAACGCGCGCACCCAGTTTAGAACTGGATTAAGTATCTTTGAGGCCTATT TTGAACTCTGCGTTCGAGGATTCCCAAGCGGCCTACAATTTTCAAGTCGC CGCAGGCGGCTTGTTTACGGTTTTTAGAGGAGTCCTGCAAACTGCGGGCA GCACTGCAAAGCAACGGTATATCGCCGTGGGTTTGGACCAGGGCGCTGCG CAGCACCACCACCCCCGCCACCCCCACCACGCCGACGTGGCTGGCGCTCG TCCAAGGTAGCTAGTGAACCGTGGTGTTCCCGCCGGGTTGCCTTCACCCT CCAAGTCAGTCAAGTCTTGAAAGATTCTTCTCGGCAGACTTTCCCCTCTG CCGAAGCTCTTCTTCCAAATTTCATTTTCATATTTCATTTTGTGATACTC AAGTGTTTTTTGTTACGGTTGCACGGGCGCCCGATGCTTTGCCTCCACTC ATTCAAACATTCGCAATATATAAAAACACACATCACACAATCAGGGCCGT TTGACGCTGGCCGGAGCGCTCCCGTATAATCTCCGTGCCAACTCACCTAT GCTCTCACCGATGTCTTTTCTTGGGCTTTTCACGCTGGCAGGAGCACGAG CGCCATCTGCGCGCAACTGAGGCGCGACGCTACGTGGCCCGGCTCAAGGA GCTGCAGGAGCTCATGAAAGCCAGAGCGCAGAGAGAGGTCGAGGGCGCAC TGGCGAGGAAGTCTCTCAACCGGTGAGGCAGCCAGTCATCGCCCCCACCG GCTTCAAGTTTCTGGTCGATGCGTTCGTCCCTCTCATGTCCCGCATTCCT TCGTTGCCGGCCGAGGACATCGTAGGCATACGAAGTTTTCTCGTGAGTGC TTCGACCGCCGTGTCACAGATTGAGCGTGCGCGAGTAAACAGCGCCCCCG CCCTCCGATCGGAAGAGGAGGGGGGAGGAGTGGGGGGCGAGGAGGAGGAA GAGGAGGACAGGGAGGAGGAAAGTTTTCCGATCAAAAGATCGAAACGATT TCACGCCGGCAGCCACGTTGTCTCATGAGGACCACACGGCAGAAGCAGCA GCAGCAGCGGCAGTGCATGTTGCACGTCCTTTTGGCAACAGGCGCATCGC GTGTACACTTTTCTGTCTTGAATCAAGTGTTTTCCCGTCGGTCTTCCGAC TCGGCCCTCCTCCATGTTTTGCGTTTTTTTCATACAGGAGGTTGGGAGAG GAGATCTCGCGGTCGGCTCAGCTGGAGAAAAGGCTAGCCGATACGCGCGA CGAACTGCAACGCCTCCGGCAGGTTTTACATCTAATCTTCGGTTGCCTTT CGTTAGCTTTCGTCAACAGTTGGAGAGTTACCCTCCCCGGCACACTCTCC GTCCCGCCAACGCTCCTCGATTTCTGTTTCCGAGAGTACGCTTGCATACG TTCTGTCCACTAGCAGACTACCCCAAGGTGATTTTTCTACCTAAGCCAAG CCTGCCCTGGCGCTTCCATCGAGAGGGGGGTGTCGAGGAGCCATGCTTCG AGGGTGGGCCTCGACAATACCCAAACCACACGAAATTCTGGCATATTATG TGGCCGGAGTATCAAGCATGTGGCATCTTTGGGGGGCCCCTCCGCGAGGC CGGTATTCGCCCGCCGCTGCTGCTCCCGCTGCTGCTGTTGCTGCTGCGGC GGCGGCGGCTGTCATCGATCATCGGGCGGGTGCCGTTCAATGTGTCCGTC AAACTCTCAAGTGCACGGTGTGTTGTCCCCTTGGCTGCCGCGCCTCCTTT TTACGGGCCCCTCCCACCTCCTGCCCCCGTCCCCACGTCCCCACGTCCCG ACGTCCCCACCCCGTTAGGATTTTGAATCGGAGAGGTGCGCCTTGGAAGA GAAGTGGCGGTCGACGCTGGATCAGGCGATAGTTGCCGCTCGCGAGGAAG AACGGTCCAAGGTAGAAAGAGATGAGACACTTGCGACATATTGCGAAGAA GGTGGCGCCTAGACTTTATTTTTCATGTGATAATTGAAGGCAATCAGAAA ACGATTACATTATCTTTGCTGTTTCTCTGGTGTTTACTTGTATGCTAGTC GTAGAAAGCAACGACATGGTCATCATGTAACTTAGCACTTCGAAGTGAAA CTTCGTCGATCTCATCGTTTTTTAATCTGTTGTTTTGTTCGCTTGTTGGC GTTGCCGAAATGCTTGACCCTAGCAGGCGAACGGGAAGGTGGAGGCGTTT ACCATCAAGCGGTTGCGGTCCCTGTCCTCGGAGGTGACCGAGTTGAAGCG GAAGCTTAAGTCCCTTCAGGTGAAAATGTTGAGGGTTGTAGCAGTCACGC TGCTGCTGCAGCTGCTGCAGCTGCTGCTGCCACTGCTACTGCCGTGGCTA CTGCTACTGCAGGTGTGGTCAGGAGCTCAGCAAATGTTAGTGCGGTGAGC TGCATTTCAAGCCCCGGCTATTTTTCCACTTGCGTACTGACCCGTAGCTG AGAGCTAGCAGACAGTCGAAATCGCAGCAAGTTACCAGGCGCTTTTTAGA GCCGCGTTTCTCACTACTCCCTGTTCCAACCCCTCCACTTCGCCACCACC CACTCGGGAACTGAAAAAACGTGAACGAAGGCCGAGAACATTTCTCTCCT GGAAGCCCTTGGCTCCCGCATCTCTCCTCCGCCGTTCCCGCCAACCTCGT GCCTCAGCCGCCGGCGAGCCAAGCCCACAGGGTCTGAGATGGAGGAGGAG GAGGCGGTGGTCTCTGCGGACGGGGAGGCTTCGTCGTGCTCCGGGGCAGA CCCCCTATTGTACGTTTGATTGCTGCTCGTGTTGCTTTCTCTTGATGGTG GTGTTTGCTTTCCGAACTCGTAGCTCACGTTGCTGCTGGATCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATGCGCGC GCGCTCCGACTCCGAGACGACCGAGCTGAGCTTGTTGAGTCCCTCTTGTG TCATCCTAATCGTTCACATGGGGGCAGGCCTCCCCACCCCACTCCCCCAC CGCGGGCTGTTTTGTCGTCGAATGGAGCAGAATCCACGCCGTCCCCGTTC ACCCCTCTATCCTCATGCGCCCAGCAGGCACAGCGGGACGGGCCTTGCCG ACGTTGTCTCCGGCTTGGCCGACCGAATAAAGCGGGCCACCTCCGAGCAT TTCTCTGGGGTCGGGCTCCAGCAGCAGCGGGTTTCGAGCCGGCAGCGTTG CGGCGACGAGAAATGGGGTGGCGACGACGATGATGACGACGATGACGATG GCGATGACGGTGATATCGTTGGCGGTGGCGTCCACCCTCCAGCCGAGCCG ATGTTGCAACATCGGCGGCGAAGGCGGCGGCAGCAGCTGCCGCCCACGGC GAATACGGCAGCAGCCGCGGGAGGCGCCAAAACAGCAAGATCCGTTGAAA GAGCAAAGCCGCCCGGCGACGAGTACCGACCAGCACCGGACATCCCAGCT AATCTTTTCGGTGAGGAGGCCCCGCGCGAGTTCAGTGGCGGCGGCGGCGG CAACGACAGCATCAGAGGTGGCAGGCGGCGGGGGCTCGGTTCGTTGGGAA GCCCGTTCGTCGGTGGCGCGCCCGGCGGCGTACCCGCCTTGAAGGGGAGT CATCTAGTGCCGGGGGAGCTGATCTCGGCGGTGAACACCCTAAGGAGTAG CAGTCGGTGGCAGCACCAGCGCCCGCTGGGCGGCAGCTGCAGCGGCAGCG GAAACTGCAAATCCGGGGCCGATTCGAACGTTTCTTCGATAGGCGCGTTG ATGGCTTCCGGGGAGTTTTTCCCTGCCGAGGTCGAAGTAAAACGCCGCCG TGGTTTCGCAACAACAACGCGCCGGAAAAGAGAATTCGCCGGACACAGCG GTGGGGCAAGGGCAGCTCGAGAGGAAACCGGCCGGGCCAGAGACGCAAGC GGAGTT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig21:2215229..2221634-

>mRNA_P-fluviatile_contig21.4667.1 ID=mRNA_P-fluviatile_contig21.4667.1|Name=mRNA_P-fluviatile_contig21.4667.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3300bp|location=Sequence derived from alignment at P-fluviatile_contig21:2215229..2221634- (Porterinema fluviatile SAG_2381)
ATGATGGGATGGAATGGGATCGGATCGGATCGGATCGGATCGGATGGAAT
GGGATGGAACGGAACGGAACTGGATCGGACGGAATCGGATGGCCGCGCGC
GTACGCCCTGCAGCGTCTCGCCGTACGTGTTCCACACCCACGCCGCGAGG
GTCTTCTCGGACATTTCCGCGGCTCTGCGGAGAGCCCAGGAGGCCAGCGC
GGATGTCGTCGCCCGCCTGGAGGCGTCCCAGATGGCCAAGATGATGGGAT
GGAATGGGATCGGATCGGATCGGATCGGATCGGATGGAATGGGATGGAAC
GGAACGGAACTGGATCGGACGGAATCGGATGGCCGCGCGCGTACGCCCTG
CAGCGTCTCGCCGTACGTGTTCCACACCCACGCCGCGAGGGTCTTCTCGG
ACATTTCCGCGGCTCTGCGGAGAGCCCAGGAGGCCAGCGCGGATGTCGTC
GCCCGCCTGGAGGCGTCCCAGATGGCCAAGGAGCACGAGCGCCATCTGCG
CGCAACTGAGGCGCGACGCTACGTGGCCCGGCTCAAGGAGCTGCAGGAGC
TCATGAAAGCCAGAGCGCAGAGAGAGGTCGAGGGCGCACTGGCGAGGAAG
TCTCTCAACCGGAGCACGAGCGCCATCTGCGCGCAACTGAGGCGCGACGC
TACGTGGCCCGGCTCAAGGAGCTGCAGGAGCTCATGAAAGCCAGAGCGCA
GAGAGAGGTCGAGGGCGCACTGGCGAGGAAGTCTCTCAACCGGAGGTTGG
GAGAGGAGATCTCGCGGTCGGCTCAGCTGGAGAAAAGGCTAGCCGATACG
CGCGACGAACTGCAACGCCTCCGGCAGGAGGTTGGGAGAGGAGATCTCGC
GGTCGGCTCAGCTGGAGAAAAGGCTAGCCGATACGCGCGACGAACTGCAA
CGCCTCCGGCAGGATTTTGAATCGGAGAGGTGCGCCTTGGAAGAGAAGTG
GCGGTCGACGCTGGATCAGGCGATAGTTGCCGCTCGCGAGGAAGAACGGT
CCAAGGATTTTGAATCGGAGAGGTGCGCCTTGGAAGAGAAGTGGCGGTCG
ACGCTGGATCAGGCGATAGTTGCCGCTCGCGAGGAAGAACGGTCCAAGGC
GAACGGGAAGGTGGAGGCGTTTACCATCAAGCGGTTGCGGTCCCTGTCCT
CGGAGGTGACCGAGTTGAAGCGGAAGCTTAAGTCCCTTCAGGCGAACGGG
AAGGTGGAGGCGTTTACCATCAAGCGGTTGCGGTCCCTGTCCTCGGAGGT
GACCGAGTTGAAGCGGAAGCTTAAGTCCCTTCAGGCCGAGAACATTTCTC
TCCTGGAAGCCCTTGGCTCCCGCATCTCTCCTCCGCCGTTCCCGCCAACC
TCGTGCCTCAGCCGCCGGCGAGCCAAGCCCACAGGGTCTGAGATGGAGGA
GGAGGAGGCGGTGGTCTCTGCGGACGGGGAGGCTTCGTCGTGCTCCGGGG
CAGACCCCCTATTGCCGAGAACATTTCTCTCCTGGAAGCCCTTGGCTCCC
GCATCTCTCCTCCGCCGTTCCCGCCAACCTCGTGCCTCAGCCGCCGGCGA
GCCAAGCCCACAGGGTCTGAGATGGAGGAGGAGGAGGCGGTGGTCTCTGC
GGACGGGGAGGCTTCGTCGTGCTCCGGGGCAGACCCCCTATTGCACAGCG
GGACGGGCCTTGCCGACGTTGTCTCCGGCTTGGCCGACCGAATAAAGCGG
GCCACCTCCGAGCATTTCTCTGGGGTCGGGCTCCAGCAGCAGCGGGTTTC
GAGCCGGCAGCGTTGCGGCGACGAGAAATGGGGTGGCGACGACGATGATG
ACGACGATGACGATGGCGATGACGGTGATATCGTTGGCGGTGGCGTCCAC
CCTCCAGCCGAGCCGATGTTGCAACATCGGCGGCGAAGGCGGCGGCAGCA
GCTGCCGCCCACGGCGAATACGGCAGCAGCCGCGGGAGGCGCCAAAACAG
CAAGATCCGTTGAAAGAGCAAAGCCGCCCGGCGACGAGTACCGACCAGCA
CCGGACATCCCAGCTAATCTTTTCGGTGAGGAGGCCCCGCGCGAGTTCAG
TGGCGGCGGCGGCGGCAACGACAGCATCAGAGGTGGCAGGCGGCGGGGGC
TCGGTTCGTTGGGAAGCCCGTTCGTCGGTGGCGCGCCCGGCGGCGTACCC
GCCTTGAAGGGGAGTCATCTAGTGCCGGGGGAGCTGATCTCGGCGGTGAA
CACCCTAAGGAGTAGCAGTCGGTGGCAGCACCAGCGCCCGCTGGGCGGCA
GCTGCAGCGGCAGCGGAAACTGCAAATCCGGGGCCGATTCGAACGTTTCT
TCGATAGGCGCGTTGATGGCTTCCGGGGAGTTTTTCCCTGCCGAGGTCGA
AGTAAAACGCCGCCGTGGTTTCGCAACAACAACGCGCCGGAAAAGAGAAT
TCGCCGGACACAGCGGTGGGGCAAGGGCAGCTCGAGAGGAAACCGGCCGG
GCCAGAGACGCAAGCGGAGTTGCACAGCGGGACGGGCCTTGCCGACGTTG
TCTCCGGCTTGGCCGACCGAATAAAGCGGGCCACCTCCGAGCATTTCTCT
GGGGTCGGGCTCCAGCAGCAGCGGGTTTCGAGCCGGCAGCGTTGCGGCGA
CGAGAAATGGGGTGGCGACGACGATGATGACGACGATGACGATGGCGATG
ACGGTGATATCGTTGGCGGTGGCGTCCACCCTCCAGCCGAGCCGATGTTG
CAACATCGGCGGCGAAGGCGGCGGCAGCAGCTGCCGCCCACGGCGAATAC
GGCAGCAGCCGCGGGAGGCGCCAAAACAGCAAGATCCGTTGAAAGAGCAA
AGCCGCCCGGCGACGAGTACCGACCAGCACCGGACATCCCAGCTAATCTT
TTCGGTGAGGAGGCCCCGCGCGAGTTCAGTGGCGGCGGCGGCGGCAACGA
CAGCATCAGAGGTGGCAGGCGGCGGGGGCTCGGTTCGTTGGGAAGCCCGT
TCGTCGGTGGCGCGCCCGGCGGCGTACCCGCCTTGAAGGGGAGTCATCTA
GTGCCGGGGGAGCTGATCTCGGCGGTGAACACCCTAAGGAGTAGCAGTCG
GTGGCAGCACCAGCGCCCGCTGGGCGGCAGCTGCAGCGGCAGCGGAAACT
GCAAATCCGGGGCCGATTCGAACGTTTCTTCGATAGGCGCGTTGATGGCT
TCCGGGGAGTTTTTCCCTGCCGAGGTCGAAGTAAAACGCCGCCGTGGTTT
CGCAACAACAACGCGCCGGAAAAGAGAATTCGCCGGACACAGCGGTGGGG
CAAGGGCAGCTCGAGAGGAAACCGGCCGGGCCAGAGACGCAAGCGGAGTT
back to top