mRNA_P-fluviatile_contig21.4649.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4649.1
Unique NamemRNA_P-fluviatile_contig21.4649.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig21.4649.1 vs. uniprot
Match: A0A6H5JGV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV1_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 6.170e-52
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = 3 
Query:    3 VVCLSYLRGLVSCLSDFDEGRIMPHLRSAGTVSCLAEMLHVNHRHLGTEASAVGAEALARVCGTEDFITYRDDYIDVNAKAVFASLKEDFVGEMSEDPVERKKLRPLLDTICACSRRDS 359
            +VCLSYLRGLVSCLSD++EGR+MPHLR A TVSCLA MLH NHRHLG EA+AVGAEALA VCGTEDFITYR++YI+  A+  FASLKEDFV ++ ED  ERK LRPLLD I  C R+ S
Sbjct:  202 IVCLSYLRGLVSCLSDYEEGRVMPHLRGAETVSCLAAMLHANHRHLGMEAAAVGAEALAFVCGTEDFITYREEYINDAARVAFASLKEDFVEKLCEDSQERKILRPLLDAISYCRRKSS 320
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BLAST of mRNA_P-fluviatile_contig21.4649.1 vs. uniprot
Match: D7G0I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.470e-45
Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 3 
Query:    3 VVCLSYLRGLVSCLSDFDEGRIMPHLRSAGTVSCLAEMLHVNHRHLGTEASAVGAEALARVCGTEDFITYRDDYIDVNAKAVFASLKEDFVGEMSEDPVERKKLR 317
            +VCLSYLRGLVS LSD +EGR+MPHLR AGTVSCLA MLH NHRHLG EA+AVGAEALA VCGTEDFITYR++YID   +  FASLKEDFV ++ ED  ERK LR
Sbjct:  173 IVCLSYLRGLVSRLSDHEEGRVMPHLRGAGTVSCLAAMLHANHRHLGMEAAAVGAEALAFVCGTEDFITYREEYIDEATRVTFASLKEDFVEKLCEDSQERKILR 277
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BLAST of mRNA_P-fluviatile_contig21.4649.1 vs. uniprot
Match: A0A5D6XRR2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRR2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-9
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:    3 VVCLSYLRGLVSCLSDFDEGRIMPHLRSAGTVSCLAEMLHVNHRHLGTEAS------AVGAEALARVCGTEDFITYRDDYIDVN-AKAVFASLKEDFVGEMSEDPVERKKLRPLLDTI 335
            +  + +L GL   L   DE R+MP +      S LA  L +N   L           AVG EALA +C TEDF ++ D Y+D    ++   +L+++++ + + D   RK+LRPLLD I
Sbjct:  180 ITIVHFLLGLCKQLDAIDESRVMPLIIEKRIFSLLAMHLSMNIHLLTVSPDSQSADIAVGVEALALLCATEDFQSHSDRYVDSRETESALLTLRDEYLEDATADEDVRKRLRPLLDVI 297
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BLAST of mRNA_P-fluviatile_contig21.4649.1 vs. uniprot
Match: A0A662YAS3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAS3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-7
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  156 AVGAEALARVCGTEDFITYRDDYIDV-NAKAVFASLKEDFVGEMSEDPVERKKLRPLLDTI 335
            A+G E LA +CGTEDF ++ D Y+D    ++   SL +D++ E +ED   RK+LRPLLD +
Sbjct:   26 AIGVEVLALICGTEDFDSHSDYYVDSPETESALLSLHDDYLEEATEDYDVRKRLRPLLDAV 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGV1_9PHAE6.170e-5273.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0I2_ECTSI4.470e-4575.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6XRR2_9STRA1.700e-934.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662YAS3_9STRA1.000e-745.90Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:2031028..2033581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue6.1e-27
Seed eggNOG ortholog2880.D7G0I2
EggNOG OGs2BYFE@1,2S2HC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_002420.1
Exons3
Model size750
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4649.1prot_P-fluviatile_contig21.4649.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 2031407..2033513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815949.2525144-UTR-P-fluviatile_contig21:2031027..20314061622815949.2525144-UTR-P-fluviatile_contig21:2031027..2031406Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2031028..2031406 -
1693563839.4958472-UTR-P-fluviatile_contig21:2031027..20314061693563839.4958472-UTR-P-fluviatile_contig21:2031027..2031406Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2031028..2031406 -
1622815949.2983859-UTR-P-fluviatile_contig21:2033513..20335811622815949.2983859-UTR-P-fluviatile_contig21:2033513..2033581Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2033514..2033581 -
1693563839.5373929-UTR-P-fluviatile_contig21:2033513..20335811693563839.5373929-UTR-P-fluviatile_contig21:2033513..2033581Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 2033514..2033581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815949.2641556-CDS-P-fluviatile_contig21:2031406..20314611622815949.2641556-CDS-P-fluviatile_contig21:2031406..2031461Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2031407..2031461 -
1693563839.5055673-CDS-P-fluviatile_contig21:2031406..20314611693563839.5055673-CDS-P-fluviatile_contig21:2031406..2031461Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2031407..2031461 -
1622815949.2747242-CDS-P-fluviatile_contig21:2032409..20325101622815949.2747242-CDS-P-fluviatile_contig21:2032409..2032510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2032410..2032510 -
1693563839.5154111-CDS-P-fluviatile_contig21:2032409..20325101693563839.5154111-CDS-P-fluviatile_contig21:2032409..2032510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2032410..2032510 -
1622815949.2861264-CDS-P-fluviatile_contig21:2033366..20335131622815949.2861264-CDS-P-fluviatile_contig21:2033366..2033513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2033367..2033513 -
1693563839.5248737-CDS-P-fluviatile_contig21:2033366..20335131693563839.5248737-CDS-P-fluviatile_contig21:2033366..2033513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 2033367..2033513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4649.1

>prot_P-fluviatile_contig21.4649.1 ID=prot_P-fluviatile_contig21.4649.1|Name=mRNA_P-fluviatile_contig21.4649.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MPHLRSAGTVSCLAEMLHVNHRHLGTEASAVGAEALARVCGTEDFITYRD
DYIDVNAKAVFASLKEDFVGEMSEDPVERKKLRPLLDTICACSRRDSVRK
*
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mRNA from alignment at P-fluviatile_contig21:2031028..2033581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4649.1 ID=mRNA_P-fluviatile_contig21.4649.1|Name=mRNA_P-fluviatile_contig21.4649.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2554bp|location=Sequence derived from alignment at P-fluviatile_contig21:2031028..2033581- (Porterinema fluviatile SAG_2381)
AGGTCGTTTGCCTCAGCTACTTGAGGGGGCTGGTATCGTGCCTGAGCGAC
TTCGACGAAGGCCGGATCATGCCGCACTTGAGGTCGGCTGGCACCGTGTC
GTGCCTCGCGGAGATGCTTCACGTTAATCACCGGCACCTGGGGACGGAGG
CGTCGGCCGTTGGGGCAGAGGCTCTCGCCCGTGTGTGCGGGACTGAAGAC
TTCATCACGTATCGGGTGAGCGACAGGTGTTGAGGGAGGGGGGGGGTTGT
GTCGCGCATCAGGAGATGCTCACAGGATGAGCGGAGGGACGGGTTTCGAG
GGTGCGCAGGGTACACTTCCAACCTCTCCAAGAGATAGGTATACGGACAC
ACAAAAAGATAGATCGAGATGGATACAAGGAGAGATGGGTAGTACTTCAG
TACATAGAAGGCCCTGTCTTCCGTTAAAGGGTTAAAACAAAGATTAGAAA
AAAAAATGTCCAAAAAGTTAGCACATTTATATGTGTTAACTTTCAATTCT
GAAGAAAGATTAGAAAAAGATATGCATAAAAAAAGTTTTTTCTATCCATT
AAAAATGGCGTAGTGTTACAATAATCGACTAAATTTATATTTACAGAATC
TTTTACCAGACGTTGTATTCCTTTTGTATCGTGGGGCAGAGAAAGAGCCG
ATGGAAATAGGAAAATACGGCTGGCGTCATTGTCTGTTTGGGGTTCTCCT
CGTGGAAGAAGAGGGCAGAAGGCGTTGATTCGCGTGATTCGCTTGGCAGA
AATGACGGTGGTGTCGGCCGGGCCATTTCCGGGGCTTCTTCTTATGCAAT
CAACCCGCAAACAGGTCGCTCAGAAAACCTCCCCCCATTCGGTGGCCTCT
CCGCCCACCTTCCACTGTGCCAGCAGTCAGCGTTGTCTGCTAGCTAAGCA
AGTGGGTGTGTTCATTTCTGGCTGGAGAATAACCGGGGGCCTTGACGTCC
TCTACGAGCTTGGACGGGGTTCTTTCGACGAAACGTTTCTAGCCGTCAGC
TGGTCGATGCCTGCCGCAATTCGTTGCCCCTTGTTATACGGTCGCTTTTG
CGACCCTCCGCCCTTGTTTAGGATGACTACATCGACGTCAACGCAAAGGC
CGTGTTCGCCAGCCTTAAGGAAGACTTCGTGGGGGAAATGAGTGAGGACC
CGGTCGAGAGAAAGAAGCTCAGGTATGAATGAACAAATAGTCATCGAGTT
TGGCGCGCAGCATTGAGGAGGCGCAAGGGCCACTTAGAAGGGGCGACGCA
CCCGAGAAATCGCACACCATTGCACACCCAGATTCCTCACCCCTTGGTGG
TGGGTGATAAACCGCCCTATGCTGTCGCGCTTTTATCGCTTCGCCATCCT
CGCGTAATAGATCGGTCTCGTCTGCCCTCGGTGACGTGCACCACACAGAG
TTTGCATTCGCGGCCAAGGTGATCAGACAAATCGGCTGGGATATCGCGTG
GGCGGTCCGAAGATGCCGGAGATGCTTCTCTTTACCTCCCCGTTGTAGAC
TGCAACCGGTACACGTTACTCTTTTCTCTCCCTGATAGCTGACGATAATT
CGAAGAGGGAACGGATAAGGTTTTAGGCCGGGCGTCCCATACCATCGTGA
TGCTTCTTTCCCGAACAGTTGAAACACATCCTTGGTCGACTACCCTACTT
TGAAGGGGTGAATCACCAGGCCACTCTTGGAGGCGACCTCTGTAAAGATA
TTGACTGTCGAAATGTCTGTCGAGGATGGTGCCCTCGTTTGATACGCTTT
TTCCCGTCTGGGGAAATAATTTTGGGTCCGTTCCTCTATCCTCTTTGGCC
TCCGTTCATGTTTGGTTAGCCCACTTAAGCACGGAAGGCATTCCGTTCGA
TTTGGAGTAGACACGGTGAACTCCACATGTGCCCGGTCAAGACCATAGGA
GTGTTTCCCTGGAAGACGAGAGTCTGAAGCAACCATCCACAACATCAATG
ACACGCGCTCGAAAAGTCACCCCTGCGGCGAGCATGGGACAACGACTCGA
AAAAGATCACACGCACCCGAACCCGAGCTGACGTCAACGCTAATCAGAGG
CTTGCTGCTCCCCCGACCCCCTGACTCTCCTTGGCCCCGTGCGACGTGAA
CACCTCCCACCGCCCGACAGGCCGCTGCTTGACACGATCTGCGCGTGCTC
ACGGCGTGATAGCGTGCGGAAGTAGTCGCTAAAAGCATTGGTCGATCGAT
CGGTCGATCTGACCAGCCGCCCAGGTAGGTAGGCGGGACGCCCCACTGCG
CTACCGCTCTTGGGCTCACGGTTGGACCGGATGTGGGTCTCTACTGTGAA
GACCGCTTGATAACATTTGTTTGTGTTGACATTTTGTTTGTGTTTTATTT
CGTCTTGTTCTCGTTCGCCATGTTGACGGCTTGTTTCCGATACACTTTTT
TGTGAGGCGGCGGTCGTGTATTATTTCGGCTTGTTCTCGTTCGCCATGCT
GACGGCTTGTTCCCGATATACTTTTTGTTAGGCGGCAGTCGGGGTGCACG
AGGGGGACCAGAATTGTCAAGTAGGGGTTCAAGACGTGGCTGGTGGACGG
CGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:2031028..2033581-

>mRNA_P-fluviatile_contig21.4649.1 ID=mRNA_P-fluviatile_contig21.4649.1|Name=mRNA_P-fluviatile_contig21.4649.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig21:2031028..2033581- (Porterinema fluviatile SAG_2381)
ATGCCGCACTTGAGGTCGGCTGGCACCGTGTCGTGCCTCGCGGAGATGCT
TCACGTTAATCACCGGCACCTGGGGACGGAGGCGTCGGCCGTTGGGGCAG
AGGCTCTCGCCCGTGTGTGCGGGACTGAAGACTTCATCACGTATCGGATG
CCGCACTTGAGGTCGGCTGGCACCGTGTCGTGCCTCGCGGAGATGCTTCA
CGTTAATCACCGGCACCTGGGGACGGAGGCGTCGGCCGTTGGGGCAGAGG
CTCTCGCCCGTGTGTGCGGGACTGAAGACTTCATCACGTATCGGGATGAC
TACATCGACGTCAACGCAAAGGCCGTGTTCGCCAGCCTTAAGGAAGACTT
CGTGGGGGAAATGAGTGAGGACCCGGTCGAGAGAAAGAAGCTCAGGATGA
CTACATCGACGTCAACGCAAAGGCCGTGTTCGCCAGCCTTAAGGAAGACT
TCGTGGGGGAAATGAGTGAGGACCCGGTCGAGAGAAAGAAGCTCAGGCCG
CTGCTTGACACGATCTGCGCGTGCTCACGGCGTGATAGCGTGCGGAAGTA
GGCCGCTGCTTGACACGATCTGCGCGTGCTCACGGCGTGATAGCGTGCGG
AAGTAG
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