mRNA_P-fluviatile_contig21.4643.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4643.1
Unique NamemRNA_P-fluviatile_contig21.4643.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:1936297..1938805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size825
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4643.1prot_P-fluviatile_contig21.4643.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 1936486..1938805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815924.9033093-UTR-P-fluviatile_contig21:1936296..19364851622815924.9033093-UTR-P-fluviatile_contig21:1936296..1936485Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1936297..1936485 -
1693563751.844164-UTR-P-fluviatile_contig21:1936296..19364851693563751.844164-UTR-P-fluviatile_contig21:1936296..1936485Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1936297..1936485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815924.9136999-CDS-P-fluviatile_contig21:1936485..19367771622815924.9136999-CDS-P-fluviatile_contig21:1936485..1936777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1936486..1936777 -
1693563751.8539467-CDS-P-fluviatile_contig21:1936485..19367771693563751.8539467-CDS-P-fluviatile_contig21:1936485..1936777Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1936486..1936777 -
1622815924.9259276-CDS-P-fluviatile_contig21:1938461..19388051622815924.9259276-CDS-P-fluviatile_contig21:1938461..1938805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1938462..1938805 -
1693563751.863592-CDS-P-fluviatile_contig21:1938461..19388051693563751.863592-CDS-P-fluviatile_contig21:1938461..1938805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1938462..1938805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4643.1

>prot_P-fluviatile_contig21.4643.1 ID=prot_P-fluviatile_contig21.4643.1|Name=mRNA_P-fluviatile_contig21.4643.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=212bp
PRCADQPQHTHEGLHPRALAALQIAARLTLDEGRTAHPRLNRAETEVTPP
HILTSSRAAATTGQTHARSCVCATILCLAFCWDSVGCSFHAFTIPTGTRR
WRASPFSSSTAGQWWCRRCTAPLPLAREVWLVLRRSVASKNQQQREIRWR
CRERERRRQRRRGLPYLGLFTKLAVCGGGDHLALSLLSSAFCLTHSIRWR
SDHRASHRQKG*
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mRNA from alignment at P-fluviatile_contig21:1936297..1938805-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4643.1 ID=mRNA_P-fluviatile_contig21.4643.1|Name=mRNA_P-fluviatile_contig21.4643.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2509bp|location=Sequence derived from alignment at P-fluviatile_contig21:1936297..1938805- (Porterinema fluviatile SAG_2381)
CCTCGCTGCGCGGACCAGCCGCAGCACACACACGAAGGCCTCCACCCCCG
CGCCCTTGCCGCTCTCCAGATAGCCGCACGTTTGACGCTTGACGAGGGTC
GTACGGCCCACCCGCGGCTGAATCGCGCGGAAACCGAGGTCACGCCGCCT
CATATCTTGACCTCTTCGCGGGCCGCGGCGACAACTGGTCAAACACACGC
ACGCAGCTGTGTGTGTGCCACCATCCTTTGCCTAGCCTTTTGTTGGGATT
CGGTCGGCTGCTCTTTCCACGCCTTCACCATCCCAACGGGAACTAGACGC
TGGCGTGCATCGCCTTTTTCCTCGAGTACTGCCGGACAGTGGTGGTGAGT
TGTCCAAAGTGAAGTCTTGCCACCGCACCAACTCTTAATATTTCCGCAGT
TGCGGCTGCTGCCGCCGGCAGCAGTTGATCGATTCCCTCAGCAAGCCCAC
GGTTTTCCGTTGAGTGTGTACCGGACCATGGGAATTGGCTTCCCGCCAGG
TGGAAGAGAGACCGATAATGGAGCATGAGCTGTTGCCCTTGCATGATCAT
GGGGGGGTGGGTTTGACCTGCTGAGCATGTTCAACTCAGGAGCAAGTTAT
TTTTCTCTCGCCGCCGAAAAGCGGGGGTTAAGGAGACAATCCTAGACACA
CCACGCGCGCGCGCGGGGGTATACCGCCCTTCCCTCTACCCTGCACTTTC
TGGGTACCTCAACCCTGTCGCCCACCCCGGCGGGCCACGCGCGCTGCTGC
CGCCAACGGCCGAGGTGGCAGGGTTTCGATCTTGCAGGGGAGGGAGAGAC
GAGTGCCTCTCTGGTCCAAGTCTACGTGTGATAATCAAGGAGCGAGATGG
AGCCTGCAGGCAGACAAGTTATCTCCTTCCAGCCGGCGTAGTTGCGTGTC
GCGGTTAAGCACGGAAGCAGTTGGCGCTGAGAAGATCTTTCGGATTTAGG
GGTGAAGCAATTCTCATTATCTTGGCAGCAAAAAATCGTGCCCTCGCTGT
GCCGGGGTGCGGGTGAGGGGTGTGTTACAAAAACGATTGAATCTCGCAAG
TGGAATCTCGGCCCAATCTGCGGGGAAAACGAAAACAATACCAAAAACGT
GTTTGAACGTACTGTTCACCCACAGCGTGTGCGTGTGGATGTTGTTGTGC
GTGTGGAAGAGTAGAAGCGCGACCCGGTGAATCAAATACCGCACCCCGCC
GGCCGTGTACTTCTCCTTCTTACAGTCTACATTCTCCGTGTGTTGGCAGA
AGTGGTGGCGCACTGCAATAAAGGGCGGAGGTGGAGCGTGGCAGGGCTGT
GTGCTGGAGAAGCTGAATTCAAACCTTGTCATTACTCGGCCGCTAACTAG
TCAAATTGTTAGGTTTCAGCTTCCACATAAGAATGTCGTGGAGTTCAAGG
AACCACACTCCCTCATTTTCCCGTTTATTTTTGTCGCCTTTACGTCGGCA
CGGCACGCTCTTCACGAGAGATGTTAATCTCACCGTACGGTAGCTTCTGT
GATTGTTCTTTTGCTCACGTGCTCAGCAATGGCACGCAGGTTTGAAATCA
AAGATGCCCGTGACTCGTTGCTTCATTACAAGCTCAGTCCCTTTCTCTCT
CTCTCTCTCTCTCTCTCTCGCCAGTCAGTAATTCTACCCCCCGCACATCT
GCCTCGACCCAAATCCAGGAGATCAGCGCGAAACGTGATTCCGTGCATGC
AGCGTTTGGAATCTCCCGAGTTGATGAACCGTGTTATACAGCCGGCGAAA
GTTGCAGACACATACGAGGCAGTCATCTTGTGTTTCTCTTTCCCCGTGGG
GCTGGTTGTTTCCCGTGTCGGGCGGCGGAAACGGAAACACGTGGAAACAG
AAACACGACCGGTTCGTACTCCCGCGGCCCTGTAAGCACTGCTGATCTAC
GCGCCCTCTCGCCCTTTCCCCGGCCGCCGGCACCCCAAGTGAAACCGGGG
GTGCATCTGACGTTCCTGCCCCTCCCGCTGCCCCCACGCCCCCCCGCGAT
AATTGTGCGTCGTTTGTGGGAGACACAGGTGCCGGCGTTGTACTGCGCCT
CTACCGTTGGCGAGGGAGGTCTGGCTTGTCCTCCGCCGGTCGGTCGCGTC
GAAAAATCAGCAGCAGAGAGAGATAAGATGGAGATGTAGAGAGAGAGAAA
GACGACGACAGCGACGTCGGGGCTTACCTTATCTCGGCCTTTTCACGAAA
CTTGCCGTTTGTGGTGGGGGAGATCACCTCGCTCTCTCTCTCCTTTCTTC
GGCCTTCTGCCTGACACACAGTATCCGCTGGCGATCTGACCACCGGGCAT
CACACAGACAAAAAGGATAGCTCACGCTGAACTAAACAAGTCGCCCGGCT
GCGAGGGGAGCACGTAGTACGGGACCGCTACCTTGCCGTCGTGCAGCTTC
ACGGCGTGTCCAGACCGATCCGGGTCCGCGGCGCGCCCCAATTGCCTAGC
CATGGAGGAGATGGTGCTCGCGGCCGAGCGGAGGGGGGGGGTCATCTGCG
CGTTGGTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:1936297..1938805-

>mRNA_P-fluviatile_contig21.4643.1 ID=mRNA_P-fluviatile_contig21.4643.1|Name=mRNA_P-fluviatile_contig21.4643.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1272bp|location=Sequence derived from alignment at P-fluviatile_contig21:1936297..1938805- (Porterinema fluviatile SAG_2381)
CCTCGCTGCGCGGACCAGCCGCAGCACACACACGAAGGCCTCCACCCCCG
CGCCCTTGCCGCTCTCCAGATAGCCGCACGTTTGACGCTTGACGAGGGTC
GTACGGCCCACCCGCGGCTGAATCGCGCGGAAACCGAGGTCACGCCGCCT
CATATCTTGACCTCTTCGCGGGCCGCGGCGACAACTGGTCAAACACACGC
ACGCAGCTGTGTGTGTGCCACCATCCTTTGCCTAGCCTTTTGTTGGGATT
CGGTCGGCTGCTCTTTCCACGCCTTCACCATCCCAACGGGAACTAGACGC
TGGCGTGCATCGCCTTTTTCCTCGAGTACTGCCGGACAGTGGTGCCTCGC
TGCGCGGACCAGCCGCAGCACACACACGAAGGCCTCCACCCCCGCGCCCT
TGCCGCTCTCCAGATAGCCGCACGTTTGACGCTTGACGAGGGTCGTACGG
CCCACCCGCGGCTGAATCGCGCGGAAACCGAGGTCACGCCGCCTCATATC
TTGACCTCTTCGCGGGCCGCGGCGACAACTGGTCAAACACACGCACGCAG
CTGTGTGTGTGCCACCATCCTTTGCCTAGCCTTTTGTTGGGATTCGGTCG
GCTGCTCTTTCCACGCCTTCACCATCCCAACGGGAACTAGACGCTGGCGT
GCATCGCCTTTTTCCTCGAGTACTGCCGGACAGTGGTGGTGCCGGCGTTG
TACTGCGCCTCTACCGTTGGCGAGGGAGGTCTGGCTTGTCCTCCGCCGGT
CGGTCGCGTCGAAAAATCAGCAGCAGAGAGAGATAAGATGGAGATGTAGA
GAGAGAGAAAGACGACGACAGCGACGTCGGGGCTTACCTTATCTCGGCCT
TTTCACGAAACTTGCCGTTTGTGGTGGGGGAGATCACCTCGCTCTCTCTC
TCCTTTCTTCGGCCTTCTGCCTGACACACAGTATCCGCTGGCGATCTGAC
CACCGGGCATCACACAGACAAAAAGGATAGGTGCCGGCGTTGTACTGCGC
CTCTACCGTTGGCGAGGGAGGTCTGGCTTGTCCTCCGCCGGTCGGTCGCG
TCGAAAAATCAGCAGCAGAGAGAGATAAGATGGAGATGTAGAGAGAGAGA
AAGACGACGACAGCGACGTCGGGGCTTACCTTATCTCGGCCTTTTCACGA
AACTTGCCGTTTGTGGTGGGGGAGATCACCTCGCTCTCTCTCTCCTTTCT
TCGGCCTTCTGCCTGACACACAGTATCCGCTGGCGATCTGACCACCGGGC
ATCACACAGACAAAAAGGATAG
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