mRNA_P-fluviatile_contig21.4628.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4628.1
Unique NamemRNA_P-fluviatile_contig21.4628.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig21.4628.1 vs. uniprot
Match: A0A6H5KT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT97_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.580e-5
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  370 LKKGMGRVWDTISADHPKPLPLMEKGVRKEDHVAKCAAQYQQQNETRRRSRVRVDSMAEQHALQDMMQA-EEKVPR 594
            LKKGMG VW+ ISADHP+PLP+ +K + KE    K       + E +RR+  + +S+AEQH L+ ++Q  EEK+ R
Sbjct:  491 LKKGMGVVWEKISADHPQPLPI-DKTLTKEQQRQKHL-----RLERQRRNEWQTNSVAEQHVLRSVLQQQEEKISR 560
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT97_9PHAE3.580e-546.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:1806032..1810209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002830.1
Hectar predicted targeting categoryother localisation
Exons4
Model size931
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4628.1prot_P-fluviatile_contig21.4628.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 1806366..1809115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815946.4381256-UTR-P-fluviatile_contig21:1806031..18063651622815946.4381256-UTR-P-fluviatile_contig21:1806031..1806365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1806032..1806365 -
1693563818.8949955-UTR-P-fluviatile_contig21:1806031..18063651693563818.8949955-UTR-P-fluviatile_contig21:1806031..1806365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1806032..1806365 -
1622815946.4821715-UTR-P-fluviatile_contig21:1809115..18091781622815946.4821715-UTR-P-fluviatile_contig21:1809115..1809178Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1809116..1809178 -
1693563818.9453747-UTR-P-fluviatile_contig21:1809115..18091781693563818.9453747-UTR-P-fluviatile_contig21:1809115..1809178Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1809116..1809178 -
1622815946.4983218-UTR-P-fluviatile_contig21:1809891..18102091622815946.4983218-UTR-P-fluviatile_contig21:1809891..1810209Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1809892..1810209 -
1693563818.955652-UTR-P-fluviatile_contig21:1809891..18102091693563818.955652-UTR-P-fluviatile_contig21:1809891..1810209Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1809892..1810209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815946.4494185-CDS-P-fluviatile_contig21:1806365..18064071622815946.4494185-CDS-P-fluviatile_contig21:1806365..1806407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1806366..1806407 -
1693563818.905381-CDS-P-fluviatile_contig21:1806365..18064071693563818.905381-CDS-P-fluviatile_contig21:1806365..1806407Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1806366..1806407 -
1622815946.4619217-CDS-P-fluviatile_contig21:1807607..18077181622815946.4619217-CDS-P-fluviatile_contig21:1807607..1807718Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1807608..1807718 -
1693563818.9138236-CDS-P-fluviatile_contig21:1807607..18077181693563818.9138236-CDS-P-fluviatile_contig21:1807607..1807718Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1807608..1807718 -
1622815946.4717157-CDS-P-fluviatile_contig21:1809052..18091151622815946.4717157-CDS-P-fluviatile_contig21:1809052..1809115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1809053..1809115 -
1693563818.9335234-CDS-P-fluviatile_contig21:1809052..18091151693563818.9335234-CDS-P-fluviatile_contig21:1809052..1809115Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1809053..1809115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4628.1

>prot_P-fluviatile_contig21.4628.1 ID=prot_P-fluviatile_contig21.4628.1|Name=mRNA_P-fluviatile_contig21.4628.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
MGRVWDTISADHPKPLPLMEKGVRKEDHVAKCAAQYQQQNETRRRSRVRV
DSMAEQHALQDMMQAEEKVPR*
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mRNA from alignment at P-fluviatile_contig21:1806032..1810209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4628.1 ID=mRNA_P-fluviatile_contig21.4628.1|Name=mRNA_P-fluviatile_contig21.4628.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4178bp|location=Sequence derived from alignment at P-fluviatile_contig21:1806032..1810209- (Porterinema fluviatile SAG_2381)
GCGCGGCCCGACGAGGGGGTTCCGCGCGAGGGAGACCTGTTGCCCGAGCC
CCTCCTACTCCGGGTGGAGAGCTTGCGACAGGAGAATTCCCGCCCCAGGG
GTACGAGGGCCGAGAGCCTCCGCGCCGTGAGCCTCCTTGGGGTATTCCGG
CAACACCCAGAGTTGGAGGGCACCCGATCCGAGCTCGTCGCCGGCCTGCA
GACGTCTATTCTCGGAGGTACCGACAGGTCGGCTAGCAGCCTCCGGGATA
ACACAGCCGGTGCCGGCACCGGCAGCGGCGGTAGCGGCCGCAGAGGCGGA
AGCCTCCTTCGACGGAAGGTTTGTGCGTTAATCTCTCGTTTGCTTCATGT
CGTGTACCACTCATCGCCGAAGGTGCCCACACGTATCAGGGTGATGGTTG
AACGGAAGCTACGGGAGGCGGAGAAGGGTGGCACAAATTGGGTGGAGGGA
GCTACCGGGGGCTGTTTCGCTTTGGTGTCGCGCAACGAACGCCATGGGCG
TGCGTGCATCTCTCTGTTCCCAGCGCTTGCGCAGAGACGCGGCACGGAAG
GTAGAACGCAACGGGCGCAGAGGTCGTGTAGGAGGAAAAGATGTAGCCGG
AGCGCAGGCAAAGCACGGACGTGTCGTATTTTTTCATGTTCTGTCCATGT
TTTTTTTTACTGCCCTCATATCGCTGCTGTATGTCCTTCATTCTCTTGCG
CCTTAAAACACCAAGTTACGGGTCGCAGGAAGCACGGCCCTGCATGCTGG
TCTTATCCGAGTGCCGTGTTGTCGTTTCCCCTTGTTTATCTGTCTTCTTG
TTTATTTTGTAGTATCAAAACACCTAGTCGGGCGATGCACGAAGTCTGGA
CTCGGGGTGCCGTGTTATTCCATTCGGAACGTGTCGAATAATACCCTCTC
CGCTTTCCATGTTCATCCCCCGATCTGTCTTGCTGTATTCGTGACCGCTA
TCGATCCTTGGTCATATCCAACCGGATGATCACTTTTTTGAATCTGTTTC
CCATTCGCATGTTGCGTTGAAACGGGAACAGGACCGTCCCAGCGGCGATC
AGGGCGGACGACAGGGAGGGATCCTCGGTGGGCTTAAAAAGGGGATGGGG
AGGGTGTGGGATACTATCTCGGCGGACCACCCGAAGCCGCTCCCGCTCAT
GGAGAAGGTGAACCAACGGGCACAAACTGGACACCTGAGGAAGGGGGGAG
GGGCGGGGGAAAGGGTCGGCTCACGAAGTGCTCTTTGGTGCTAGGAACAC
CTCGAATGGGCTCCCCTTTCAGTACACTTTGCAACATGTCGCCAGCAAGG
GAGCCGCAAGCACGCGTGTGTTGCCATCCATTATTGAGGCTTGATTGTTC
CGGCAATCTTCGAAGCTGCCTGCTCCTCATGGAGGCCTTTGTTGATGCAA
TACTAATGCTTTTGTATTTTATTTATCAATCTGAGGGGCTTTTTTCGTGG
TCCGATGAGGTAACATCGATCTTTCCGATTTTCCTCACGCGAGTATTCAT
GACGTGATGACCTCTGAGCCTGCACGTGTACAATTCTTTGAACTTAAGAG
ACACATACACCGGAGTCCTTGCTACAGCTGGGCATGGATTCTGCCCTGTT
CTGTCCCCCGTCCTCTGCCATCAGCAAGAGTTTCCTCCAGCATGTGGTAT
GCCTGTTCCCAAATTTGTGTGGAGAGTTTCATCTCGGTACCCTTTGCTTG
GCCCATCCTTGGGAGTGCAGTATTTGACCCGCTGACACCTGAGTCTATTC
ATTTCAGCGACTGAGTCGACGCATTTTAAGGAACATACGCGCACGCACAC
ACACACACCCGAGGCGGTTTGAAAGAGATGGCTCAATGCGCGGTTCGATG
CATGGCCTTGCGCGCGGAACATTTTGGTTCCTTTTCTGCTTGGGGCACCT
AATCATAGCGCGGGGGTTACGCATATTCTCGCTCGTGCATTTGTCTGGCC
AAGTCCTGGGAAATCTGCTGACGTAGACAAAGTACGAGAGTGATTTGGTA
TTGAACAATAACGCATGCCAGAGGTTTCAATGTGTTGTACTTTCAACATA
GCAATGGGTAAGCAGAGGGGAGAGCGGGCGAAGGGCGGGATTGAACGCAT
GAAGTCAGGTAATTTTTTCGTTTGATGTATCGCCTGCGTCGATCCCCACT
CCTGACGTAATGTTGAACCTGCAATCCCCGATACCTCTAACCGGCCCACA
AATAGCCTGTGGCTGGAATAAACAGAGGGCATGACCCTGGAAACGCGCAC
GGATGAGAGACTTCGACTCGGCGAAGATTAGTCGTGCGCGGCAGGGGCCC
GTGCCGCCCTCATCCGCATAAGCCACGTGCGTCGCTGTCGTTTTTGTTTT
TTCTCTTGTTGCCGTCTCGGGTGTCTGGCTCTCACTGATCATGCCGCAGG
GAGGCAGAGTAGAGCAGGGACAAGTCACCCGACATCAGCCAAATTCAACT
CCGGTAACGTGGTGACGCTCCCCGTGTTGTGTCGTACGCAGGGCGTAAGA
AAGGAAGATCACGTCGCCAAGTGCGCAGCGCAATACCAGCAGCAGAACGA
AACCCGCAGGCGAAGTCGCGTGCGCGTCGACAGCATGGCGGAGCAGCACG
CGGTGAGATTCAGCGAAGGCCTGTCGCGTTGCGGTACCTGACCCCCCCTT
CTCGCCTCTGAAATTGGCAGCAGGAGCAGAGCAGCAGCAGCAGCAGCAGC
AGCGGCACACACGCACGCACACCATTCCGATAGCACGCACTCGTTTGTTC
TTGCGCGCGGGTCGCTTGAAGTGGTCCTGTCGCCTGATTGGATTTTAGCC
CCGTCGTTTTGCTGGTATTGATGCACGGTATCGAAATAGGCCACAGCACG
CGGAGGTCGTGGACGGGGGGGGGGATGCAGCGGCTGCGCACGGCACGGGT
CGGCACCTGACATAGTGAGCGGCAGAGCGTTTGCCGATTCGATGTTTGCT
CGGATGTATCTGGTATCCGCTCGACTCTATCTCTGGTTATGTACGTACAC
GCTTTGAAATCTTCACGCCGTAGAACCCGTGCACCCTCCCTCGAGGTCAA
GGTCACCCTTCCCACGCGCAGAATCGCGCCCTCACCCTCCCTCATGCGGC
GAACCGCAGTCAACGGGTGGCACGCGTGAATAGAGCCGCCTTGACGCTAA
GGCGCAAGCAGAGCACCCTGTGAAACTGCGCACCTCTGACAGTGCCTCGC
TAGATGTTGGCGCATCTTGTTGTCGGTGCTTGGAACCCGGAATGTCGCCA
CCGAGGCGAACGCTGTCCCTACGCCCTTCCCTACCCGTCGGAAAATCGAA
TGCGACGACGAATGCGACGCCGAATGCGGTGGACCCAGACTGCATCATTT
CAAACCACTGTATAGTTGGTTGAGTAGTCGGTTGAGCGGAACAATAATAG
TAGTTGCTTCAGCAGCAGCAAAAGTGGCAGCAACAATGGCGTAGCAGTGG
CAGTAGGCAGCGGCAGCGGTAGCCGCAGACGAGTAGCATAGTTGGCGGGC
GCGCACTTGATCGAAGTCTTACGTCACGTCCGCTATGTGCTGTTGTTGCT
GTCTGTTGTTGTCTCGGCTGCCTTCCTCTCCCTTGCCCAAAAGGAGGAAA
GTTCCACCAGACGACGGCCTAGCGTGCTTGTCGTTTACGCTGCCCGTCGT
TTGAAGATGCAGCTCCCTTCCCCACACAGGGAGGGTGACACCGAATCACA
CAATCATGTCCCCTGTCTTCTCTCCCTCTCCGCCCCACCCTCTTCTTCTC
CCATGCCGACCTCTTCCTCTACGGTCGTCGCAACTCTCCCTTCCGACGTC
AGTTGCAGGACATGATGCAAGCGGAGGAGAAGGTCCCACGCTGACTGTTA
CGCTCTGCGGAAGATGCATTCCGGCCGAGCCTCGTGTCACCAATTGTTTG
TACAAGGCACCGCCGATCTTCGTGGATGATGTTCACGAGCCTGCTTTTAG
GCGAGGGACCCGAGGCTACTGTCAAATTTCGAAACATTGCTTGTCAAAGT
TAAGAAAAAACGCCTGAATCCACGGAACCAATGGCCGGCGACTATCTTTT
TGTATGCGTTCGTTGTGACATAATATGGTGCGTGTATCAAGACAGCAGGC
TGCGATATGTTTTCGCTCTTGTCGGCGACGCTGCCGCTTCGCCACTGATG
GGAAGGGCCTGGCTGTGAATTCGTGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:1806032..1810209-

>mRNA_P-fluviatile_contig21.4628.1 ID=mRNA_P-fluviatile_contig21.4628.1|Name=mRNA_P-fluviatile_contig21.4628.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig21:1806032..1810209- (Porterinema fluviatile SAG_2381)
ATGGGGAGGGTGTGGGATACTATCTCGGCGGACCACCCGAAGCCGCTCCC
GCTCATGGAGAAGATGGGGAGGGTGTGGGATACTATCTCGGCGGACCACC
CGAAGCCGCTCCCGCTCATGGAGAAGGGCGTAAGAAAGGAAGATCACGTC
GCCAAGTGCGCAGCGCAATACCAGCAGCAGAACGAAACCCGCAGGCGAAG
TCGCGTGCGCGTCGACAGCATGGCGGAGCAGCACGCGGGCGTAAGAAAGG
AAGATCACGTCGCCAAGTGCGCAGCGCAATACCAGCAGCAGAACGAAACC
CGCAGGCGAAGTCGCGTGCGCGTCGACAGCATGGCGGAGCAGCACGCGTT
GCAGGACATGATGCAAGCGGAGGAGAAGGTCCCACGCTGATTGCAGGACA
TGATGCAAGCGGAGGAGAAGGTCCCACGCTGA
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