mRNA_P-fluviatile_contig21.4546.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig21.4546.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE) HSP 1 Score: 306 bits (783), Expect = 4.220e-89 Identity = 247/648 (38.12%), Postives = 314/648 (48.46%), Query Frame = 3
Query: 396 RFQSEVLVRVRPKRVQHRFLKHVPCGEFLAWSPGKWGIGEMTAVRCRHTFTVLASSARAGPEIVEIHNCLATRFNVRHAYEHSTTLLRAFVQHKHLLIREQNRLDRNSGLFVNRVQAGEDFDGMSFASSHGHVVSASATVATLDA----PNKTAARRRQPQGRQKDAGPKFASGKRPAPFPRRPQPADKPRFAPPHSNRTIR--APPSAGRGLRGANPPAVADIANAAGFTTCEVDGGMGDGPGTFTAVRVGDEASDARGALTTHQD-EARTLGGVISPRKSRGADSVGRRRALMARVGAGIGVDLSRVMDALLEGGDGQGLMEPNNGQPPHTARTIPAAFGQ----------TQTLGDSIGHAGIEFGELDDGQNQGSADESASRRDRGQDFDDDKAGSTNDGSSKIT--DVPVARARPCDEVET------SRRARTVVGGGTGAHRRRRNVASAIVRIPGHDRKRPYNTFHRFLLMEQQTKKIFFTLD-GGGVYDGVEAGGXXXXXXXXXXXXXXXXXXXXXRRHDENRDIRQRFSANFGIKQAWPSAQKPEIRTQG-----------------------------------------------------PYYRTNGGAPRQK--SANALHMSANPKRWKFSGAKV 2096
RFQSEVLVRVRPK VQHRFLKHV CGEFLAWSPGKW IGE TA RCR TFTVLA+S RAGPE+VEI NCLATR HST+LLRAFV+ KH+LIR++NR+DR S +N +Q +DFDGMS SSH +A+ V T+ + P+ A R+ + P KR PFPRRPQP +KPRFAPP S R IR + S RG N P+V + NA GG G GD++ A D + GG + A+ VGRRR L+AR+G G+G+DLS +DALL + + E + G ++ IP A + T T G+S G E DD + R+ + D G + + + T D ++R R + SR+ R+V GG G RRR ++VR+PG +R+RPYN+F RF ME++T+ +FF+L G G G E D N +RFSANFG K+AW +PEIRTQG PY NG A K S N H+ NP+RWKFSG+KV
Sbjct: 160 RFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATR-------HHSTSLLRAFVEDKHILIRDENRIDRGSEFVMNGMQTADDFDGMSVRSSHKQAAAAAEIVLTICSAITFPSCHARRKMITHSTEATTTP----CKRAVPFPRRPQPGEKPRFAPPQSTRAIRVSSATSERRGRTTENDPSVL-VGNATRIGGEATGGGCG-----------GDDSHCGARATGLGDDVDTGVHGGGQRQGSTTAANPVGRRRVLIARLGEGLGLDLSPAIDALLHREEHLRVPESHFG----SSGDIPEALDENTPASRMPVSTGTTGESTLPRGTE----DDADRRHDEQGKIQRQQKQHHPQHDTGGGSAENGTTRTRDDDTLSRVRSPENTSEPASCNRSRKVRSVAGG--GGERRRDVAMGSVVRVPGQERRRPYNSFDRFRKMERETRNVFFSLGCGSGSGKGCEGVAGKNKARDTSRGAGA----------DGNAINVKRFSANFGRKEAWTPMSEPEIRTQGRLRCKHRWRSALVTLCTTCTSVAPFTSQLMSIANKHSLTLQPIVDCSPAVFSGPYLGKNGCASSTKTTSLNPRHLLTNPRRWKFSGSKV 764
BLAST of mRNA_P-fluviatile_contig21.4546.1 vs. uniprot
Match: D7G4T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T5_ECTSI) HSP 1 Score: 299 bits (765), Expect = 1.040e-87 Identity = 227/577 (39.34%), Postives = 273/577 (47.31%), Query Frame = 3
Query: 396 RFQSEVLVRVRPKRVQHRFLKHVPCGEFLAWSPGKWGIGEMTAVRCRHTFTVLASSARAGPEIVEIHNCLATRFNVRHAYEHSTTLLRAFVQHKHLLIREQNRLDRNSGLFVNRVQAGEDFDGMSFASSHGHVVSASATVATLDAPNKTAARRRQPQGRQKDAGPKFASGKRPAPFPRRPQPADKPRFAPPHSNRTIRAPPSAGR--GLRGANPPAVADIANAAGFTTCEVDGGMGDGPGTFTAVRVGDEASDARGALTTHQDEARTLGGVISPRKS--RGA-DSVGRRRALMARVGAGIGVDLSRVMDALLEGGDGQGLMEPNNGQ--PPHTARTIPAAFGQTQTLGDSIGHAGIEFGELDDGQNQGSADESASRRDRGQDFDDDKAGSTNDGSSKITDVPVARARPCDEVETSRRARTVVGGGTGAHRRRRNVASAIVRIPGHDRKRPYNTFHRFLLMEQQTKKIFFTLD-GGGVYDGVEAGGXXXXXXXXXXXXXXXXXXXXXRRHDENRDIRQRFSANFGIKQAWPSAQKPEIRTQGPYYRTNGGAPRQK--SANALHMSANPKRWKFSGAKV 2096
RFQSEVLVRVRPK VQHRFLKHV CGEF+AWSPGKW IGE TA RCR TFTVLA+S RAGPE+VE+ NCLATRFNVRH Y+HST LL+AFV+ KH+LIR++NR+DR S +N + +DFDGMS SSH PQG ++A KR PFPRRPQPA+KPRFAPP S R IR + G N P+V G TC +G EA+ ART + RG D+V RR D QG + Q P H A G T+T D D S++ P + P + SR+AR+V GG G RRR ++VR+PG +R+RPYN FHRF ME++T+ +FF+L G G G E D N +RFSA FG K+AW +PEIRTQGPY NG A K S N H+ NPKRWKFSG+KV
Sbjct: 172 RFQSEVLVRVRPKSVQHRFLKHVHCGEFIAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEVGNCLATRFNVRHGYQHSTGLLQAFVEDKHILIRDENRIDRGSEFVMNGMHTADDFDGMSVRSSHKQAXXXXXXXXXXXXXXXXXXXX-XPQGNNREAT--TTPCKRAVPFPRRPQPAEKPRFAPPQSTRAIRVSSATSERLGRTKDNDPSVL-----VGNATC-----------------IGGEATGGGCGXXXXHCXARTXXXXXXXESTLPRGTEDNVDRRH-------------------------DEQGKIRRQQEQYHPQHDTSGGGAENGTTRTRDD-------------------------------------------DTLSRVRS-PENTSEPASCIR-SRKARSVAGG--GGERRRDVAVGSVVRVPGQERRRPYNNFHRFRKMERETRNVFFSLGCGSGSGKGCEGVAGENKARDTSRGAGA----------DGNAINVKRFSAKFGRKEAWTPMPEPEIRTQGPYLGKNGCASSTKTTSLNPRHLLTNPKRWKFSGSKV 641 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig21.4546.1 >prot_P-fluviatile_contig21.4546.1 ID=prot_P-fluviatile_contig21.4546.1|Name=mRNA_P-fluviatile_contig21.4546.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=539bp MTAVRCRHTFTVLASSARAGPEIVEIHNCLATRFNVRHAYEHSTTLLRAFback to top mRNA from alignment at P-fluviatile_contig21:755488..761125- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig21.4546.1 ID=mRNA_P-fluviatile_contig21.4546.1|Name=mRNA_P-fluviatile_contig21.4546.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5638bp|location=Sequence derived from alignment at P-fluviatile_contig21:755488..761125- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig21:755488..761125- >mRNA_P-fluviatile_contig21.4546.1 ID=mRNA_P-fluviatile_contig21.4546.1|Name=mRNA_P-fluviatile_contig21.4546.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3234bp|location=Sequence derived from alignment at P-fluviatile_contig21:755488..761125- (Porterinema fluviatile SAG_2381)back to top |