mRNA_P-fluviatile_contig21.4499.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4499.1
Unique NamemRNA_P-fluviatile_contig21.4499.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig21.4499.1 vs. uniprot
Match: D8LPC0_ECTSI (EsV-1-89 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPC0_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.670e-51
Identity = 112/192 (58.33%), Postives = 124/192 (64.58%), Query Frame = 3 
Query:  216 TLGPNPFTPLLQPMTPQLPLAPHVP------------NPLLMAAAMSTF-TDSSFAPGEGPSXXXXXXXXXXXXXXXDSS----------YMYPFYPSYPFDYVYPFAT--VMPQYQHPTDPNNQYPNPLTGSMTEPGPALAGGYNVYGPQNLIGAPPAFSERDRIIEHNRAAMQARSPHAPYIMHPLPVPP 716
            T+GPNPFTPLLQPMTP                     NPLLMAA +S    DSSF PG  PS      XXXXXX    S+          YM   YP Y     YPFAT  V PQ  HPTDPNNQYP+PLTGSMTEPGPALAGGYNVY P N+IGAPPAFSERDR +EHN+A MQ++SP+APYIM+ +PVPP
Sbjct:   86 TVGPNPFTPLLQPMTPAXXXXXXXXXXXXXXXXMGGMNPLLMAATVSALGKDSSFTPGAAPSSSFNTGXXXXXXSFDASASGDAPSSSYHYMNALYPYY----SYPFATHAVSPQNPHPTDPNNQYPHPLTGSMTEPGPALAGGYNVYDPHNVIGAPPAFSERDRALEHNKAVMQSQSPYAPYIMNQVPVPP 273
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BLAST of mRNA_P-fluviatile_contig21.4499.1 vs. uniprot
Match: Q8QNI8_ESV1K (EsV-1-89 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI8_ESV1K)

HSP 1 Score: 125 bits (314), Expect = 4.450e-31
Identity = 105/214 (49.07%), Postives = 120/214 (56.07%), Query Frame = 3 
Query:  192 SPRPMLAPTLGPNPFTPLLQPMTPQLPLAP--HVP----------NPLLMAAAMSTFT-DSSFAPGEGPSXXXXXXXXXXXXXXXDSS--------------------------YMYPFYPSYPFDYVYPFATVMPQYQHPTDPNNQYPNPLTGSMTEPGPALAGGYNVYGPQNLIGAPPAFSERDRIIEHNRAAMQARSPHAPYIMHPLPVPP 716
            +P P +  T+GPNPFTPLLQPM P +   P  HV           NPLLMAA +S  + DSSF  G  PSXXXXXXXXXXXXXXX                             YM   YP                            NPLTGSMT+PGPALAGGYNVY PQN+IGAPPAFSER R +EHNRAA+Q++SP+APYIM+ +PVPP
Sbjct:   78 TPAPGVMNTVGPNPFTPLLQPMAPAMXXXPPSHVAPPMVAPMGGMNPLLMAATVSALSKDSSFNAGAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHYMNALYPYXXXXXXXXXXXXXXXXXXXXX--XXXXNPLTGSMTDPGPALAGGYNVYDPQNVIGAPPAFSERARALEHNRAAVQSQSPYAPYIMNQVPVPP 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPC0_ECTSI1.670e-5158.33EsV-1-89 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNI8_ESV1K4.450e-3149.07EsV-1-89 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:382638..383377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size537
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815930.1518369-CDS-P-fluviatile_contig21:382637..3831741622815930.1518369-CDS-P-fluviatile_contig21:382637..383174Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 382638..383174 -
1693563763.0412831-CDS-P-fluviatile_contig21:382637..3831741693563763.0412831-CDS-P-fluviatile_contig21:382637..383174Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 382638..383174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815930.162864-UTR-P-fluviatile_contig21:383174..3833771622815930.162864-UTR-P-fluviatile_contig21:383174..383377Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 383175..383377 -
1693563763.050745-UTR-P-fluviatile_contig21:383174..3833771693563763.050745-UTR-P-fluviatile_contig21:383174..383377Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 383175..383377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4499.1prot_P-fluviatile_contig21.4499.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 382638..383174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4499.1

>prot_P-fluviatile_contig21.4499.1 ID=prot_P-fluviatile_contig21.4499.1|Name=mRNA_P-fluviatile_contig21.4499.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=179bp
MLAPTLGPNPFTPLLQPMTPQLPLAPHVPNPLLMAAAMSTFTDSSFAPGE
GPSSSFSPGTGAGGSGSPDSSYMYPFYPSYPFDYVYPFATVMPQYQHPTD
PNNQYPNPLTGSMTEPGPALAGGYNVYGPQNLIGAPPAFSERDRIIEHNR
AAMQARSPHAPYIMHPLPVPPPDAPPSR*
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mRNA from alignment at P-fluviatile_contig21:382638..383377-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4499.1 ID=mRNA_P-fluviatile_contig21.4499.1|Name=mRNA_P-fluviatile_contig21.4499.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=740bp|location=Sequence derived from alignment at P-fluviatile_contig21:382638..383377- (Porterinema fluviatile SAG_2381)
GACCCCGAGTCGTCCTTCGGGTACGGTCTGGTATACAACCCCATCGACCC
GTTGAACCAATACCCGCACTACGAGACCGGCGAGGAGGTCTACGGCCCGC
CACCCCTGTTCGGAATCAACAAGCACGACCCTCTCAACATGAAACCATTT
AACCCCAACATGTACGCCGGGCTCTTGGGAAGTGCCCCGGCAGTCCCCGG
CCCATGCTCGCGCCTACGCTAGGCCCTAACCCGTTCACGCCACTCCTGCA
GCCCATGACCCCACAGCTTCCGCTCGCGCCACACGTGCCCAACCCGTTGC
TGATGGCCGCCGCGATGTCCACATTCACCGACTCCTCTTTCGCCCCGGGC
GAAGGCCCCTCATCCTCCTTCAGCCCCGGCACGGGAGCCGGGGGCAGTGG
CTCCCCAGACTCCTCGTATATGTACCCATTTTACCCGTCCTACCCCTTCG
ACTACGTGTATCCGTTCGCGACGGTGATGCCACAGTACCAGCACCCCACA
GACCCCAACAACCAGTACCCCAACCCGCTGACGGGGTCCATGACAGAACC
CGGGCCAGCCCTCGCAGGCGGATACAACGTCTACGGCCCCCAGAACCTGA
TAGGGGCTCCACCGGCCTTCAGCGAGAGGGATAGAATTATAGAGCACAAC
CGGGCCGCGATGCAGGCCCGGAGCCCGCACGCGCCGTACATCATGCACCC
CCTTCCCGTCCCCCCGCCCGACGCGCCGCCCTCCCGGTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:382638..383377-

>mRNA_P-fluviatile_contig21.4499.1 ID=mRNA_P-fluviatile_contig21.4499.1|Name=mRNA_P-fluviatile_contig21.4499.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1074bp|location=Sequence derived from alignment at P-fluviatile_contig21:382638..383377- (Porterinema fluviatile SAG_2381)
ATGCTCGCGCCTACGCTAGGCCCTAACCCGTTCACGCCACTCCTGCAGCC
CATGACCCCACAGCTTCCGCTCGCGCCACACGTGCCCAACCCGTTGCTGA
TGGCCGCCGCGATGTCCACATTCACCGACTCCTCTTTCGCCCCGGGCGAA
GGCCCCTCATCCTCCTTCAGCCCCGGCACGGGAGCCGGGGGCAGTGGCTC
CCCAGACTCCTCGTATATGTACCCATTTTACCCGTCCTACCCCTTCGACT
ACGTGTATCCGTTCGCGACGGTGATGCCACAGTACCAGCACCCCACAGAC
CCCAACAACCAGTACCCCAACCCGCTGACGGGGTCCATGACAGAACCCGG
GCCAGCCCTCGCAGGCGGATACAACGTCTACGGCCCCCAGAACCTGATAG
GGGCTCCACCGGCCTTCAGCGAGAGGGATAGAATTATAGAGCACAACCGG
GCCGCGATGCAGGCCCGGAGCCCGCACGCGCCGTACATCATGCACCCCCT
TCCCGTCCCCCCGCCCGACGCGCCGCCCTCCCGGTAAATGCTCGCGCCTA
CGCTAGGCCCTAACCCGTTCACGCCACTCCTGCAGCCCATGACCCCACAG
CTTCCGCTCGCGCCACACGTGCCCAACCCGTTGCTGATGGCCGCCGCGAT
GTCCACATTCACCGACTCCTCTTTCGCCCCGGGCGAAGGCCCCTCATCCT
CCTTCAGCCCCGGCACGGGAGCCGGGGGCAGTGGCTCCCCAGACTCCTCG
TATATGTACCCATTTTACCCGTCCTACCCCTTCGACTACGTGTATCCGTT
CGCGACGGTGATGCCACAGTACCAGCACCCCACAGACCCCAACAACCAGT
ACCCCAACCCGCTGACGGGGTCCATGACAGAACCCGGGCCAGCCCTCGCA
GGCGGATACAACGTCTACGGCCCCCAGAACCTGATAGGGGCTCCACCGGC
CTTCAGCGAGAGGGATAGAATTATAGAGCACAACCGGGCCGCGATGCAGG
CCCGGAGCCCGCACGCGCCGTACATCATGCACCCCCTTCCCGTCCCCCCG
CCCGACGCGCCGCCCTCCCGGTAA
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