mRNA_P-fluviatile_contig21.4479.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4479.1
Unique NamemRNA_P-fluviatile_contig21.4479.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig21.4479.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   76 RRVDVFEMDRIFVPLNVVETHWCMAVIY 159
            RRV VFEMD+IFVP+NV   HWCMAVI+
Sbjct:  446 RRVKVFEMDKIFVPVNVSNAHWCMAVIF 473
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BLAST of mRNA_P-fluviatile_contig21.4479.1 vs. uniprot
Match: K3WMB9_GLOUD (ULP_PROTEASE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMB9_GLOUD)

HSP 1 Score: 48.9 bits (115), Expect = 3.110e-5
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   76 RRVDVFEMDRIFVPLNVVETHWCMAVIY 159
            R++D+F MD+IFVP+N+  THWCMAVI+
Sbjct:  330 RKIDLFAMDKIFVPVNISNTHWCMAVIF 357
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BLAST of mRNA_P-fluviatile_contig21.4479.1 vs. uniprot
Match: A0A5D6XMS5_9STRA (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMS5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   76 RRVDVFEMDRIFVPLNVVETHWCMAVIY 159
            R++D+F MD++FVP+N+  THWCMAVI+
Sbjct:  294 RKIDLFAMDKVFVPVNISNTHWCMAVIF 321
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BLAST of mRNA_P-fluviatile_contig21.4479.1 vs. uniprot
Match: A0A8K1CG44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG44_PYTOL)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   76 RRVDVFEMDRIFVPLNVVETHWCMAVIY 159
            R++D+F MD+IFVP+NV  THWC+AVI+
Sbjct:  314 RKIDLFSMDKIFVPVNVSNTHWCLAVIF 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMK6_ECTSI1.670e-575.00ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
K3WMB9_GLOUD3.110e-564.29ULP_PROTEASE domain-containing protein n=1 Tax=Glo... [more]
A0A5D6XMS5_9STRA4.250e-560.71ULP_PROTEASE domain-containing protein (Fragment) ... [more]
A0A8K1CG44_PYTOL4.250e-564.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:277083..277408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815929.188204-CDS-P-fluviatile_contig21:277083..2771651622815929.188204-CDS-P-fluviatile_contig21:277083..277165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 277084..277165 -
1693563762.269681-CDS-P-fluviatile_contig21:277083..2771651693563762.269681-CDS-P-fluviatile_contig21:277083..277165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 277084..277165 -
1622815929.1987877-CDS-P-fluviatile_contig21:277328..2774081622815929.1987877-CDS-P-fluviatile_contig21:277328..277408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 277329..277408 -
1693563762.277879-CDS-P-fluviatile_contig21:277328..2774081693563762.277879-CDS-P-fluviatile_contig21:277328..277408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 277329..277408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4479.1prot_P-fluviatile_contig21.4479.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 277084..277408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4479.1

>prot_P-fluviatile_contig21.4479.1 ID=prot_P-fluviatile_contig21.4479.1|Name=mRNA_P-fluviatile_contig21.4479.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
DVQSRSLPAAVPLLNLPFPGHALAERRVDVFEMDRIFVPLNVVETHWCMA
VIYA
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mRNA from alignment at P-fluviatile_contig21:277083..277408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4479.1 ID=mRNA_P-fluviatile_contig21.4479.1|Name=mRNA_P-fluviatile_contig21.4479.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=326bp|location=Sequence derived from alignment at P-fluviatile_contig21:277083..277408- (Porterinema fluviatile SAG_2381)
GATGTGCAAAGCAGATCCCTCCCGGCGGCCGTCCCTCTTCTTAATCTCCC
ATTTCCTGGCCACGCTCTCGCCGAGCGGCGGCGAGTACGACTACACCGCA
GTCGAGCGTTGGACGCGAAAGGGAGTGTTCATGCCAACCGCGGTCGGGAC
CCCTTTCTGCAAGCCTTAGACTAATTGTGTTGTGCGATGATGCCGCATGT
GGCGACCGCTGATCAACGGATGACGCGCCTTTGGATTTTACAGGGTGGAC
GTGTTCGAGATGGACAGGATCTTCGTTCCGCTCAACGTCGTCGAAACCCA
CTGGTGCATGGCCGTGATCTACGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:277083..277408-

>mRNA_P-fluviatile_contig21.4479.1 ID=mRNA_P-fluviatile_contig21.4479.1|Name=mRNA_P-fluviatile_contig21.4479.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig21:277083..277408- (Porterinema fluviatile SAG_2381)
GATGTGCAAAGCAGATCCCTCCCGGCGGCCGTCCCTCTTCTTAATCTCCC
ATTTCCTGGCCACGCTCTCGCCGAGCGGCGGATGTGCAAAGCAGATCCCT
CCCGGCGGCCGTCCCTCTTCTTAATCTCCCATTTCCTGGCCACGCTCTCG
CCGAGCGGCGGGTGGACGTGTTCGAGATGGACAGGATCTTCGTTCCGCTC
AACGTCGTCGAAACCCACTGGTGCATGGCCGTGATCTACGCAGGTGGACG
TGTTCGAGATGGACAGGATCTTCGTTCCGCTCAACGTCGTCGAAACCCAC
TGGTGCATGGCCGTGATCTACGCA
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