mRNA_P-fluviatile_contig21.4477.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4477.1
Unique NamemRNA_P-fluviatile_contig21.4477.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:272611..273047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size257
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4477.1prot_P-fluviatile_contig21.4477.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 272611..272951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815923.604601-CDS-P-fluviatile_contig21:272610..2727631622815923.604601-CDS-P-fluviatile_contig21:272610..272763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 272611..272763 +
1693563750.6589088-CDS-P-fluviatile_contig21:272610..2727631693563750.6589088-CDS-P-fluviatile_contig21:272610..272763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 272611..272763 +
1622815923.6180897-CDS-P-fluviatile_contig21:272945..2729511622815923.6180897-CDS-P-fluviatile_contig21:272945..272951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 272946..272951 +
1693563750.6734746-CDS-P-fluviatile_contig21:272945..2729511693563750.6734746-CDS-P-fluviatile_contig21:272945..272951Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 272946..272951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815923.630875-UTR-P-fluviatile_contig21:272951..2730471622815923.630875-UTR-P-fluviatile_contig21:272951..273047Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 272952..273047 +
1693563750.6855085-UTR-P-fluviatile_contig21:272951..2730471693563750.6855085-UTR-P-fluviatile_contig21:272951..273047Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 272952..273047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4477.1

>prot_P-fluviatile_contig21.4477.1 ID=prot_P-fluviatile_contig21.4477.1|Name=mRNA_P-fluviatile_contig21.4477.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=53bp
PLLLSRRRCWHESCSSPCCCPGVGVGMHLALLLLFLKLAGMNLARPLVVV
QA*
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mRNA from alignment at P-fluviatile_contig21:272611..273047+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4477.1 ID=mRNA_P-fluviatile_contig21.4477.1|Name=mRNA_P-fluviatile_contig21.4477.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=437bp|location=Sequence derived from alignment at P-fluviatile_contig21:272611..273047+ (Porterinema fluviatile SAG_2381)
CCCTTGTTGTTGTCCAGGCGTAGGTGTTGGCATGAATCTTGCTCGTCCCC
TTGTTGTTGTCCAGGCGTAGGTGTGGGCATGCATCTTGCCCTTCTCCTTT
TGTTTCTTAAGCTTGCGGGCATGAATCTTGCTCGTCCCCTTGTTGTTGTC
CAGGCGTAGGTGTGGGCATGAATCTTGCCCTTCCCTTGTTGTTGTCCAGG
CGTAGGTGTGGGCATGCATCTTGCCCTCCCTTTTTTTGTTTCTTAAGCTT
GCGGGCATGAATCTTGCTCGTCCCCTTGTTGTTGTCCAGGCGTAGGTGCG
GGCATGAATCTTGCCCTTCCCTTGTTGTTGTCCAGGCGTAGGTGTGGGCA
TGAATCTTGCCCTTCCCCTTTTGTTTTTTAAGCTTGCGGGCATGAATCTT
GCTCGTCCCCTTGTTGTTGTCCAGGCATTGGTGTGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:272611..273047+

>mRNA_P-fluviatile_contig21.4477.1 ID=mRNA_P-fluviatile_contig21.4477.1|Name=mRNA_P-fluviatile_contig21.4477.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=318bp|location=Sequence derived from alignment at P-fluviatile_contig21:272611..273047+ (Porterinema fluviatile SAG_2381)
CCCTTGTTGTTGTCCAGGCGTAGGTGTTGGCATGAATCTTGCTCGTCCCC
TTGTTGTTGTCCAGGCGTAGGTGTGGGCATGCATCTTGCCCTTCTCCTTT
TGTTTCTTAAGCTTGCGGGCATGAATCTTGCTCGTCCCCTTGTTGTTGTC
CAGCCCTTGTTGTTGTCCAGGCGTAGGTGTTGGCATGAATCTTGCTCGTC
CCCTTGTTGTTGTCCAGGCGTAGGTGTGGGCATGCATCTTGCCCTTCTCC
TTTTGTTTCTTAAGCTTGCGGGCATGAATCTTGCTCGTCCCCTTGTTGTT
GTCCAGGCGTAGGCGTAG
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