mRNA_P-fluviatile_contig21.4472.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4472.1
Unique NamemRNA_P-fluviatile_contig21.4472.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 1.200e-132
Identity = 208/328 (63.41%), Postives = 238/328 (72.56%), Query Frame = 2
Query:  647 QERGFNNGMFSCFVGTKDAPEAGSRRRGGAFWSHGTLRKRFSESAFIACMKARIPFVLEGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTGAVSDEQLRETLNGGTFTIDNTEVDKQTDRTCSATLKNDAVTRMIREKTRMEELCFPRRGN-QRGGSLDR*FSRRRCVGG*RVYVICERRWNDKPACGRAICPRGNREIIRMPAAGIIRNVNHADTQWPAKQAIVVHADDMSRVIETLKIDTGKESTSQYGGKLQTLPEFARLLRGAGIRFVVVNFPARCSHALPAKCAHVFITIGLVESSAWHPVFGQKI 1627
            ++ G NNG+FSC +    AP     RR   FWS+G  RK  SE+ FIAC KA+IP VLEGDAP  SP+GEMM  A+ + VARLGYIGK SGRGPL L PDLTD WRTGAV+D+QLR+TLNGGTFTIDNTE +K  DRTC AT++ND VT MIRE TRM ELCFPRRGN QR G L    +      G    +  +      P       P G   II MPAAG+IR VNHAD Q PAKQAIVVHADDMSRVIETL+I+TGKES SQYGG  +TL EFAR+LR  GIRFVV+NFP RCS+ALPA+CAH F+TIGLVESSAWHPV+ Q +
Sbjct:   21 KDEGLNNGLFSCLLRKDTAPREDRSRRPCPFWSNGPERKGLSENVFIACTKAKIPLVLEGDAPPKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLNGGTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGNSADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPVYKQDM 348          
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 2.020e-91
Identity = 168/274 (61.31%), Postives = 196/274 (71.53%), Query Frame = 2
Query:  800 ARIPFVLEGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTGAVSDEQLRETLNGGTFTIDNTEVDKQTDRTCSATLKNDAVTRMIREKTRMEELCFPRRGNQ-RGGSLDR*FSRRRCVGG*RVYVICERRWNDKPACGRAICPRGNREIIRMPAAGIIRNVNHADTQWPAKQAIVVHADDMSRVIETLKIDTGKESTSQYGGKLQTLPEFARLLRGAGIRFVVVNFPARCSHALPAKC----AHVFITIGLVESS-AW 1603
            A IP VLEGDAP  SP+GEMM  A+ KGVAR+GYIGK SGRGPL L P LTD WRTGAV+D+QLR+TLNGGTFTIDNTE +K+TD+TC ATL+ND VT MIRE TRM ELCFPRRGN  + G+L    +      G    +  +      P       P G   II MPAAG+IR VN+ +   PAKQAIVVHADDMSRVIETLKI+T KES SQYGG  +TLPEFAR+L+  GIRFVV+NFP+RCS+ALPA+     AH     GL+ S+ AW
Sbjct:  314 AAIPLVLEGDAPAQSPMGEMMQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLNGGTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTGKEADGVAWSGSECMLFAKDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFMRAHELALRGLLHSNDAW 587          
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.020e-48
Identity = 119/324 (36.73%), Postives = 172/324 (53.09%), Query Frame = 2
Query:  656 GFNNGMFSCFVGTKDAPEAGSRRRGG---AFWSHGTLRKRFSESAFIACMKARIPFVLEGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTGAVSDEQLRETLNGG-TFTIDNTEVDKQTDRTCSATLKNDAVTRMIREKTRMEELCFPRRGNQRGGSLDR*FS-RRRCVGG*RVYVICERRWNDKPACGRAICPRGNREIIRMPAAGIIRNVNHADTQWPAKQAIVVHADDMSRVIETLKIDTGKESTSQYGGKLQTLPEFARLLRGAGIRFVVVNFPARCSHALPAKCAHVFITIGLVESSAWHPV 1612
            GF+NG+F  ++   +AP     RR     AFWS GT R  ++E AF AC+KA  P + EGD    S +G     A  + + R+G +G ++G     + P   + W  G +  ++L++      T+T  N E D + D     T++    + ++R  TRM  LC P R   RGG L    S R +   G  V     R      +        G  E + +PAAG +R+VN   +  PAK+AI++ A DM RV++ L +D  K S+SQY G +  L   A  LR   IRFVVV+FP  CS+A+PA+CAH+F+T+ LVES AWHP+
Sbjct:  296 GFDNGLFCGYLDMANAPPYVPGRRDDPTVAFWSKGTDRLEYTEHAFKACLKAHFPVIFEGDDTYRSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRN-TRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHG--EHLYLPAAGTMRSVNRRGS-GPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPI 615          
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.360e-47
Identity = 118/326 (36.20%), Postives = 172/326 (52.76%), Query Frame = 2
Query:  662 NNGMFSCFVGTKDAPEAGSRRR---GGAFWSHGTLRKRFSESAFIACMKARIPFVLEGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTGAVSDEQLRETLNGGT-FTIDNTEVDKQTDRTCSATLKNDAVTRMIREKTRMEELCFPRRGN-----QRGGSLDR*FSRRRCV-GG*RVYVICERRWNDKPACGRAICPRGNREIIRMPAAGIIRNVNHADTQWPAKQAIVVHADDMSRVIETLKIDTGKESTSQYGGKLQTLPEFARLLRGAGIRFVVVNFPARCSHALPAKCAHVFITIGLVESSAWHP 1609
            +NG+F  F+   +AP    RRR   G +FWS G  R+R S+  F AC+ A  P ++EGD    S +G +   A    +++L  +G + G    +L  +  D W  G V D  LR+   G T +TI N E +++ D     T++  A T ++R KTRM  LC+P   +       GG L +  S    +  G  V     RR +       A+    N + + +PAAG +R+VN  D + PAK+AIVV A DM RV+   K+D  K    QYGG +  L   A  L+   I FVV++FP  CS+A+P KCAH+ +T+ LVE+ AW+P
Sbjct:   68 DNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDI-TRSVMGAVCKAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVR-KTRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDAL--EVNEKPLFLPAAGAMRSVNRGD-RGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNP 388          
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Match: UPI0000161E52 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52)

HSP 1 Score: 171 bits (433), Expect = 1.280e-42
Identity = 86/131 (65.65%), Postives = 100/131 (76.34%), Query Frame = 2
Query:  647 QERGFNNGMFSCFVGTKDAPEAGSRRRGGAFWSHGTLRKRFSESAFIACMKARIPFVLEGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTGAVSDEQLRETLNGGTFTIDNTEV 1039
            ++ G NNG+FSC +    AP+    RR   FWS+G+ RK  SE+  IAC KA+IP VLEGDAP  SP+GEMM  A+ KGVAR+GYIGK SGRGPL L PDLTD WR GAVSD+QLR+TLNGGTFTIDNTEV
Sbjct:  416 KDEGLNNGLFSCLLRKDTAPKEDRSRRPCPFWSNGS-RKELSENVAIACTKAQIPLVLEGDAPEKSPMGEMMKYAAGKGVARIGYIGKTSGRGPLTLTPDLTDAWRIGAVSDKQLRDTLNGGTFTIDNTEV 545          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KV31_9PHAE1.200e-13263.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP46_ECTSI2.020e-9161.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S5_ECTSI2.020e-4836.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7Y6_ECTSI2.360e-4736.20Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
UPI0000161E521.280e-4265.65hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:232445..234323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1763
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4472.1prot_P-fluviatile_contig21.4472.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 233031..233653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815928.9139376-UTR-P-fluviatile_contig21:232444..2330301622815928.9139376-UTR-P-fluviatile_contig21:232444..233030Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 232445..233030 -
1693563762.1046736-UTR-P-fluviatile_contig21:232444..2330301693563762.1046736-UTR-P-fluviatile_contig21:232444..233030Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 232445..233030 -
1622815928.9607062-UTR-P-fluviatile_contig21:233653..2343231622815928.9607062-UTR-P-fluviatile_contig21:233653..234323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 233654..234323 -
1693563762.1354856-UTR-P-fluviatile_contig21:233653..2343231693563762.1354856-UTR-P-fluviatile_contig21:233653..234323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 233654..234323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815928.9334319-CDS-P-fluviatile_contig21:233030..2331711622815928.9334319-CDS-P-fluviatile_contig21:233030..233171Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 233031..233171 -
1693563762.1173632-CDS-P-fluviatile_contig21:233030..2331711693563762.1173632-CDS-P-fluviatile_contig21:233030..233171Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 233031..233171 -
1622815928.94652-CDS-P-fluviatile_contig21:233287..2336531622815928.94652-CDS-P-fluviatile_contig21:233287..233653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 233288..233653 -
1693563762.1277444-CDS-P-fluviatile_contig21:233287..2336531693563762.1277444-CDS-P-fluviatile_contig21:233287..233653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 233288..233653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4472.1

>prot_P-fluviatile_contig21.4472.1 ID=prot_P-fluviatile_contig21.4472.1|Name=mRNA_P-fluviatile_contig21.4472.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=169bp
MFSCFVGTKDAPEAGSRRRGGAFWSHGTLRKRFSESAFIACMKARIPFVL
EGDAPVLSPVGEMMLVASRKGVARLGYIGKKSGRGPLNLKPDLTDKWRTG
AVSDEQLRETLNGGTFTIDNTEVDKQTDRTCSATLKNDAVTRMIREKTRM
EELCFPRRGNQRGGSLDR*
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mRNA from alignment at P-fluviatile_contig21:232445..234323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4472.1 ID=mRNA_P-fluviatile_contig21.4472.1|Name=mRNA_P-fluviatile_contig21.4472.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1879bp|location=Sequence derived from alignment at P-fluviatile_contig21:232445..234323- (Porterinema fluviatile SAG_2381)
AGTGGCGATAGGCGACGGGACACGTTGTTGCAGTGGTCTCAGGGAAATGA TGTTGGTGTCCTCTGAGCGTGTGCCTGCGAAAAGGCAAGTTGGTACACTT GTTTCAATGACTATGAGCGAGCACATTCGCCACATGAGACCTGTGCTGAC GTTTTTGATGTTTCAAACCAGCACAAGTACAATTCCAATCTTTCTTGTTG TGTTCTCCATACCAGACCGACTGCAAATTGCAGGTGGCAATTACGTGGCC GGCAGCGGCGCCCCCGTCAATTACAGTAGTGATCCTCGAGCACAACCGTG ATTGCAGGATGGAAGAAGTTGCCATGGCACTCAACGACAGAAACCCGAAC GAGGGGAAGCACACGCGGCGGTGGGGCTGGGGATGGAACGCGATCAACAC TTACGTCTACAATCTTTGAAACATTGCCACACTAGTCTTTCCCAAACTCT CAAAACCTTTGACTATACACGAACGTTGACGAACACACATGTTTTTCGAC CAGACGCCGGATGTTACGAGGAACGAGACGAGGGTTCGGTTCGAGATGTC CACATCCGACCTAGACGTAAAAACACGCCATGAACTGATGGGACTCTTCG AGGGGGACCATATATTGGATGGCATCGAGTCGTTCGGAGAGGATAACAAG AACGAGGCTTCAACAACGGAATGTTTTCCTGTTTCGTTGGCACGAAAGAT GCCCCGGAGGCGGGTAGTCGTAGAAGAGGAGGTGCTTTCTGGAGCCACGG GACTCTGAGGAAACGTTTTTCAGAGAGTGCGTTCATCGCATGCATGAAGG CGCGGATTCCCTTCGTACTGGAAGGCGACGCCCCTGTCCTATCGCCGGTG GGTGAGATGATGCTCGTCGCCTCTCGTAAAGGTGTGGCTCGCCTTGGCTA CATCGGCAAGAAGTCCGGGAGGGGGCCGCTGAATCTGAAGCCGGATTTGA CGGATAAGTGGCGCACTGGTGCGGTGTCGGACGAGCAATTGCGAGAGACG CTGAACGGAGGAACGTTCACCATCGACAACACAGAGGTGCGTTGTTTGGC GCTTTTCAACACACGTTGCTTTTAAGCACCGATTTACTGCATGTACTCGT TGCCAATATACATTTGATGTTCAAAACTCGGTTTTGCCAACTGGTTCTAC AGGTGGACAAGCAGACGGACAGGACGTGTAGCGCCACACTGAAAAACGAC GCCGTGACTAGGATGATTCGAGAAAAGACTAGGATGGAAGAACTGTGCTT TCCACGCAGGGGTAATCAGAGGGGTGGGAGTTTGGACCGGTAATTCAGCA GACGGCGTTGCGTGGGGGGGTAGCGAGTGTATGTAATTTGCGAAAGACGG TGGAATGACAAACCCGCATGTGGACGTGCAATCTGTCCCAGGGGGAACAG GGAAATAATCCGCATGCCTGCAGCGGGCATCATACGGAACGTCAACCATG CAGACACCCAGTGGCCGGCAAAACAGGCCATCGTGGTGCATGCGGACGAT ATGTCTAGGGTGATCGAAACGCTGAAAATAGATACCGGCAAGGAATCCAC CAGTCAGTACGGCGGAAAGCTCCAGACGCTTCCTGAGTTCGCGAGATTGC TGAGAGGTGCAGGAATTAGGTTTGTTGTGGTGAATTTTCCTGCGCGCTGC TCGCACGCCCTGCCCGCGAAGTGTGCACACGTGTTTATTACGATAGGGTT GGTTGAGAGCTCGGCGTGGCACCCTGTTTTCGGTCAGAAGATTACCTGGT CGGCGTGATGTTGGTGCTCTTTGTGGTAATCGAGATGCGGTTTGAGAGGA TACAGTTGTAGGAAAATGGTCTTGATTTGCAAAAGCTATTGCTTCGGAGC GGGGTGAACCCCGCGCACCTACTGCTTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:232445..234323-

>mRNA_P-fluviatile_contig21.4472.1 ID=mRNA_P-fluviatile_contig21.4472.1|Name=mRNA_P-fluviatile_contig21.4472.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1014bp|location=Sequence derived from alignment at P-fluviatile_contig21:232445..234323- (Porterinema fluviatile SAG_2381)
ATGTTTTCCTGTTTCGTTGGCACGAAAGATGCCCCGGAGGCGGGTAGTCG
TAGAAGAGGAGGTGCTTTCTGGAGCCACGGGACTCTGAGGAAACGTTTTT
CAGAGAGTGCGTTCATCGCATGCATGAAGGCGCGGATTCCCTTCGTACTG
GAAGGCGACGCCCCTGTCCTATCGCCGGTGGGTGAGATGATGCTCGTCGC
CTCTCGTAAAGGTGTGGCTCGCCTTGGCTACATCGGCAAGAAGTCCGGGA
GGGGGCCGCTGAATCTGAAGCCGGATTTGACGGATAAGTGGCGCACTGGT
GCGGTGTCGGACGAGCAATTGCGAGAGACGCTGAACGGAGGAACGTTCAC
CATCGACAACACAGAGATGTTTTCCTGTTTCGTTGGCACGAAAGATGCCC
CGGAGGCGGGTAGTCGTAGAAGAGGAGGTGCTTTCTGGAGCCACGGGACT
CTGAGGAAACGTTTTTCAGAGAGTGCGTTCATCGCATGCATGAAGGCGCG
GATTCCCTTCGTACTGGAAGGCGACGCCCCTGTCCTATCGCCGGTGGGTG
AGATGATGCTCGTCGCCTCTCGTAAAGGTGTGGCTCGCCTTGGCTACATC
GGCAAGAAGTCCGGGAGGGGGCCGCTGAATCTGAAGCCGGATTTGACGGA
TAAGTGGCGCACTGGTGCGGTGTCGGACGAGCAATTGCGAGAGACGCTGA
ACGGAGGAACGTTCACCATCGACAACACAGAGGTGGACAAGCAGACGGAC
AGGACGTGTAGCGCCACACTGAAAAACGACGCCGTGACTAGGATGATTCG
AGAAAAGACTAGGATGGAAGAACTGTGCTTTCCACGCAGGGGTAATCAGA
GGGGTGGGAGTTTGGACCGGTAAGTGGACAAGCAGACGGACAGGACGTGT
AGCGCCACACTGAAAAACGACGCCGTGACTAGGATGATTCGAGAAAAGAC
TAGGATGGAAGAACTGTGCTTTCCACGCAGGGGTAATCAGAGGGGTGGGA
GTTTGGACCGGTAA
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