mRNA_P-fluviatile_contig20.4433.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4433.1
Unique NamemRNA_P-fluviatile_contig20.4433.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:2500209..2500641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815893.0482278-CDS-P-fluviatile_contig20:2500208..25006401622815893.0482278-CDS-P-fluviatile_contig20:2500208..2500640Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2500209..2500640 +
1693563665.4307945-CDS-P-fluviatile_contig20:2500208..25006401693563665.4307945-CDS-P-fluviatile_contig20:2500208..2500640Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2500209..2500640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4433.1prot_P-fluviatile_contig20.4433.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 2500209..2500640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4433.1

>prot_P-fluviatile_contig20.4433.1 ID=prot_P-fluviatile_contig20.4433.1|Name=mRNA_P-fluviatile_contig20.4433.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
CAYTTTHAQRPASRTGRRIERRNGQTNIISCLVGPPSPNSTSKREQAREI
SKGSWRAGESSSATSIVVSSAAFLDSQATRPRVYTREGYVWVFVSTLKMF
SGAARDSSSHHTSSPLTFRAHLCSALALYVQQLRIYITVSSVPV
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mRNA from alignment at P-fluviatile_contig20:2500209..2500641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4433.1 ID=mRNA_P-fluviatile_contig20.4433.1|Name=mRNA_P-fluviatile_contig20.4433.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=433bp|location=Sequence derived from alignment at P-fluviatile_contig20:2500209..2500641+ (Porterinema fluviatile SAG_2381)
TGCGCCTACACCACTACTCACGCCCAAAGACCCGCGTCACGGACTGGACG
GCGGATCGAACGGAGGAACGGCCAAACGAACATAATATCTTGCTTGGTGG
GCCCCCCCTCTCCAAATTCAACTTCAAAGAGGGAACAAGCCCGTGAAATT
TCAAAGGGAAGCTGGCGGGCTGGTGAATCCTCCTCTGCCACCTCTATCGT
GGTCAGTTCGGCGGCCTTTTTGGACTCCCAAGCTACCCGTCCTCGTGTGT
ATACTCGGGAGGGATATGTTTGGGTGTTCGTGAGCACTCTCAAGATGTTC
AGCGGGGCTGCACGAGACTCTTCTTCACACCATACCTCCAGCCCTCTCAC
CTTTAGAGCTCATTTGTGTAGCGCGCTTGCTCTCTATGTCCAGCAGCTCC
GGATCTACATAACCGTAAGCTCCGTTCCTGTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:2500209..2500641+

>mRNA_P-fluviatile_contig20.4433.1 ID=mRNA_P-fluviatile_contig20.4433.1|Name=mRNA_P-fluviatile_contig20.4433.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig20:2500209..2500641+ (Porterinema fluviatile SAG_2381)
TGCGCCTACACCACTACTCACGCCCAAAGACCCGCGTCACGGACTGGACG
GCGGATCGAACGGAGGAACGGCCAAACGAACATAATATCTTGCTTGGTGG
GCCCCCCCTCTCCAAATTCAACTTCAAAGAGGGAACAAGCCCGTGAAATT
TCAAAGGGAAGCTGGCGGGCTGGTGAATCCTCCTCTGCCACCTCTATCGT
GGTCAGTTCGGCGGCCTTTTTGGACTCCCAAGCTACCCGTCCTCGTGTGT
ATACTCGGGAGGGATATGTTTGGGTGTTCGTGAGCACTCTCAAGATGTTC
AGCGGGGCTGCACGAGACTCTTCTTCACACCATACCTCCAGCCCTCTCAC
CTTTAGAGCTCATTTGTGTAGCGCGCTTGCTCTCTATGTCCAGCAGCTCC
GGATCTACATAACCGTAAGCTCCGTTCCTGTCTGCGCCTACACCACTACT
CACGCCCAAAGACCCGCGTCACGGACTGGACGGCGGATCGAACGGAGGAA
CGGCCAAACGAACATAATATCTTGCTTGGTGGGCCCCCCCTCTCCAAATT
CAACTTCAAAGAGGGAACAAGCCCGTGAAATTTCAAAGGGAAGCTGGCGG
GCTGGTGAATCCTCCTCTGCCACCTCTATCGTGGTCAGTTCGGCGGCCTT
TTTGGACTCCCAAGCTACCCGTCCTCGTGTGTATACTCGGGAGGGATATG
TTTGGGTGTTCGTGAGCACTCTCAAGATGTTCAGCGGGGCTGCACGAGAC
TCTTCTTCACACCATACCTCCAGCCCTCTCACCTTTAGAGCTCATTTGTG
TAGCGCGCTTGCTCTCTATGTCCAGCAGCTCCGGATCTACATAACCGTAA
GCTCCGTTCCTGTC
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