mRNA_P-fluviatile_contig20.4404.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4404.1
Unique NamemRNA_P-fluviatile_contig20.4404.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: D7FKU7_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU7_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.250e-96
Identity = 142/193 (73.58%), Postives = 161/193 (83.42%), Query Frame = 1
Query:  178 GGYKRSGWIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDERCLNVG-----EASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLRTCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMH 741
            GG  R  WIQDFC  PGNEFFAEVP+SFIRE MN+I+IGRGVDIPY +EAL VIL ER + VG      AS V+SSAALLYGLLHARFLVSP GLKV+L+ FSK  FGRCPRVYCQGQAVLPVGE+DRP QSSVKVFCPRC ++Y+P+G +R CDGAF+GTT   LLLLGWPELK +P+TS +VPRVFGFK+H
Sbjct:   32 GGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 224          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A7S0VLG2_9CRYP (Casein kinase II subunit beta n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VLG2_9CRYP)

HSP 1 Score: 177 bits (448), Expect = 5.360e-51
Identity = 85/188 (45.21%), Postives = 129/188 (68.62%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILD-----ERCLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNL-RTCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQ 744
            WIQ FCS  GNEFF +V   F+++  N    G G  +PY + AL +ILD     +  L   +  +VES+A +LYGL+HAR++++  G++ ++D F++  FGRCPRV C GQAVLPVG++D+P + +VKV+CPRC EI++P  +  R+ DGA+FGTT   LL++  P++  S  T  +VP++FGF++H+
Sbjct:   31 WIQWFCSLQGNEFFTDVAEDFVQDEFNLT--GLGSLVPYYDYALDIILDIESPQDEALTEEQQELVESAAEILYGLIHARYILTQRGMQQMVDKFNRLEFGRCPRVMCDGQAVLPVGQSDQPQKHTVKVYCPRCCEIFYPRSSKNRSTDGAYFGTTFPHLLVMANPDICPS-ETPCYVPKIFGFRLHK 215          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A087SKW6_AUXPR (Casein kinase II subunit beta n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SKW6_AUXPR)

HSP 1 Score: 176 bits (446), Expect = 2.650e-50
Identity = 87/189 (46.03%), Postives = 118/189 (62.43%), Query Frame = 1
Query:  193 SGWIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDERCLNV-----GEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMH 741
            S WI  FC   GNEFF EV   ++++  N    G G  +PY + AL  IL+   ++       +  +VE +A  LYGL+HAR++++  GL  + + F  G FGRCPRV C GQ  LPVG +D P Q++VK+FCPRC+E Y+P   L    DGA+FGTT   LLLL +P L+ + ST  FVPR+FGFK+H
Sbjct:   40 STWIHWFCGLKGNEFFCEVEEDYVQDDFNLS--GLGGMVPYYDYALDFILEAESVHTEIMTEAQQEMVEGAAETLYGLIHARYVLTARGLAAMAEKFRAGEFGRCPRVLCHGQPCLPVGVSDLPRQATVKLFCPRCEEAYYPRSRLHGNLDGAYFGTTMAHLLLLTYPALRPTKSTEAFVPRIFGFKIH 226          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A0L0DJK7_THETB (Casein kinase II subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJK7_THETB)

HSP 1 Score: 175 bits (443), Expect = 2.670e-50
Identity = 83/186 (44.62%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILD----ERCLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLRT-CDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMH 741
            WI+ FCS  GNEFF EV   FI++  N    G    +PY E A+ +ILD     +     +  ++E++A +LYGL+HAR++++  GL  + D ++   FG+CPRV+C GQAVLPVGE+D P  ++VKVFCPRC+ +Y P    +   DGA+FGTT   L+   +PE+  SP+T  +VPR++GFK+H
Sbjct:   14 WIRWFCSLRGNEFFCEVDEDFIQDDFNLT--GLSSMVPYYEYAMDMILDCDTPNQMFTEEQQEMIETAAEMLYGLIHARYILTNRGLSAMADKYNHHQFGKCPRVFCNGQAVLPVGESDMPRTNTVKVFCPRCENLYIPRSQRQANIDGAYFGTTFAHLIFHIYPEMMPSPATQEYVPRIYGFKIH 197          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A836BYD2_9CHLO (Casein kinase II subunit beta n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYD2_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 2.890e-50
Identity = 88/196 (44.90%), Postives = 122/196 (62.24%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDER-----CLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQIGVGCCES 768
            WI  FCS  GNEFF EV   +I +  N    G    +PY E AL +ILD        L   +  ++ES+A +LYGL+HAR++V+  GL  +L+ F    FGRCPR YC+GQA LPVG +D P QS+VK+FCP+C++I++P    + + DGA+FGTT   LLL+ +P  +   S   +VPR+FGFK+H    G  E+
Sbjct:   45 WISWFCSLRGNEFFCEVDEEYIEDDFNLS--GLSSQVPYYEYALDMILDNEPPHDVMLTDQQHELLESAAEMLYGLIHARYIVTARGLACMLEKFKNYEFGRCPRFYCEGQACLPVGTSDVPGQSTVKIFCPKCEDIFYPRSEYQCSIDGAYFGTTFPHLLLMTYPMYRPPKSVEQYVPRIFGFKLHPTAYGNREA 238          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A2J8A3W0_9CHLO (Casein kinase II subunit beta n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A3W0_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 4.200e-50
Identity = 87/192 (45.31%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDER-----CLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQIGVG 756
            WI  FCS  GNEFF EV   +I +  N    G    +PY E AL +ILD        L   +  ++ES+A +LYGL+HAR++V+  GL  +L+ F    FGRCPR YC+GQA LPVG  D P QS+VK+FCP+C++I++P    + + DGA+FGTT   LLL+ +P  +   S   +VPR+FGFK+H    G
Sbjct:   44 WISWFCSLRGNEFFCEVDEEYIEDDFNLS--GLSTQVPYYEYALDMILDNEPPQDVLLTDQQHELLESAAEMLYGLIHARYIVTARGLACMLEKFKNYEFGRCPRFYCEGQACLPVGTADVPGQSTVKIFCPKCEDIFYPRSEYQCSIDGAYFGTTFPHLLLMTYPMYRPPKSVEQYVPRIFGFKLHPSAYG 233          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A0M0LS08_9EUKA (Casein kinase II subunit beta n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LS08_9EUKA)

HSP 1 Score: 181 bits (459), Expect = 1.130e-49
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 1
Query:  172 AAGGYKRSGWIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDERCLNVGEAS-----IVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLRT-CDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQIG 750
            A+G    S W+Q FCS  GNEFFAEV   F+++  N    G    +PY E AL  ++D   L     S      +ES+A LLYGL+HAR++++P G+  +L+ F    FGRCPRV+CQGQ  LPVG++D P   + K+FCPRC++I++P  + +   DGA+FGT+   L L  + EL  +P  S +VPR+FGFK+H+ G
Sbjct:   16 ASGSDGDSSWVQWFCSLKGNEFFAEVDAEFMQDDFNLT--GLSAQVPYYEYALDTVMDAESLATANFSKEQQESIESAAELLYGLIHARYIITPLGMAAMLEKFKHCHFGRCPRVHCQGQPALPVGQSDLPRMHTTKIFCPRCQDIFYPRSSRQANVDGAYFGTSFCHLFLQSYWELVPTPPVSSYVPRIFGFKIHKSG 212          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A2K3E5T0_CHLRE (Casein kinase II subunit beta n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E5T0_CHLRE)

HSP 1 Score: 174 bits (442), Expect = 1.960e-49
Identity = 86/192 (44.79%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDER-----CLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQIGVG 756
            WI  FCS  GNEFF EV   +I +  N    G    +PY E AL +ILD        L   +  ++ES+A +LYGL+HAR++V+  GL  +L+ F    FGRCPR +C+GQA LPVG +D P QS+VK+FCP+C++I++P    + + DGA++GTT   LLL+ +P  +   S  V+VPR+FGFK+H    G
Sbjct:   43 WISWFCSLRGNEFFCEVDEEYIEDDFNLS--GLSSQVPYYEYALDMILDNEPPHDVMLTDQQHELLESAAEMLYGLIHARYIVTARGLACMLEKFKNFEFGRCPRFHCEGQACLPVGTSDVPGQSTVKIFCPKCEDIFYPRSEYQCSIDGAYYGTTFPHLLLMTYPMYRPPKSNDVYVPRIFGFKLHPSAYG 232          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: A0A6A2WR79_HIBSY (Casein kinase II subunit beta n=5 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WR79_HIBSY)

HSP 1 Score: 174 bits (442), Expect = 2.130e-49
Identity = 87/187 (46.52%), Postives = 118/187 (63.10%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDERC-----LNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMH 741
            WI  FC+  GNEFF EV   +I++  N    G    +PY E AL +ILD        L   +  +VES+A +LYGL+HARF+++  G+  +LD +    FGRCPRVYC GQ  LPVG++D P  S+VKV+CPRC++IY+P    +   DGA+FGTT   L L+ +  LK   +T  +VPRVFGFK+H
Sbjct:  101 WISWFCNLRGNEFFCEVDNDYIQDDFNLC--GLSSQVPYYEHALDLILDIESSHGDMLTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSSTVKVYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYSHLKPQKATQSYVPRVFGFKLH 285          
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Match: UPI001B3BE397 (casein kinase II subunit beta-2 isoform X1 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3BE397)

HSP 1 Score: 171 bits (434), Expect = 3.370e-49
Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 1
Query:  199 WIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIPYMEEALAVILDERC-----LNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLDMFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGNLR-TCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMH 741
            WI  FC+  GNEFF EV   +I++  N    G    +PY + AL +ILD            +  +VES+A +LYGL+HARF+++  G+  +LD +    FGRCPRVYC GQ  LPVG++D P  S+VK+FCPRC++IY+P    +   DGA+FGTT   L L+ +  LK   ++ ++VPRVFGFK+H
Sbjct:   22 WISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSSTVKIFCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYSHLKPLKASQIYVPRVFGFKLH 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU7_ECTSI1.250e-9673.58Casein kinase II subunit beta n=2 Tax=Ectocarpus T... [more]
A0A7S0VLG2_9CRYP5.360e-5145.21Casein kinase II subunit beta n=1 Tax=Hemiselmis t... [more]
A0A087SKW6_AUXPR2.650e-5046.03Casein kinase II subunit beta n=2 Tax=Auxenochlore... [more]
A0A0L0DJK7_THETB2.670e-5044.62Casein kinase II subunit beta n=1 Tax=Thecamonas t... [more]
A0A836BYD2_9CHLO2.890e-5044.90Casein kinase II subunit beta n=1 Tax=Edaphochlamy... [more]
A0A2J8A3W0_9CHLO4.200e-5045.31Casein kinase II subunit beta n=1 Tax=Tetrabaena s... [more]
A0A0M0LS08_9EUKA1.130e-4944.22Casein kinase II subunit beta n=1 Tax=Chrysochromu... [more]
A0A2K3E5T0_CHLRE1.960e-4944.79Casein kinase II subunit beta n=3 Tax=Chlamydomona... [more]
A0A6A2WR79_HIBSY2.130e-4946.52Casein kinase II subunit beta n=5 Tax=Hibiscus syr... [more]
UPI001B3BE3973.370e-4944.92casein kinase II subunit beta-2 isoform X1 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:2238690..2241781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue5.6e-77
Seed eggNOG ortholog2880.D7FKU7
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionCasein kinase II, regulatory subunit
Ec32 orthologEc-17_001440.1
Exons6
Model size900
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4404.1prot_P-fluviatile_contig20.4404.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 2238702..2241658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815916.8997269-UTR-P-fluviatile_contig20:2238689..22387011622815916.8997269-UTR-P-fluviatile_contig20:2238689..2238701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2238690..2238701 +
1693563720.9072695-UTR-P-fluviatile_contig20:2238689..22387011693563720.9072695-UTR-P-fluviatile_contig20:2238689..2238701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2238690..2238701 +
1622815916.9815352-UTR-P-fluviatile_contig20:2241658..22417811622815916.9815352-UTR-P-fluviatile_contig20:2241658..2241781Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2241659..2241781 +
1693563721.2321057-UTR-P-fluviatile_contig20:2241658..22417811693563721.2321057-UTR-P-fluviatile_contig20:2241658..2241781Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2241659..2241781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815916.9121027-CDS-P-fluviatile_contig20:2238701..22389351622815916.9121027-CDS-P-fluviatile_contig20:2238701..2238935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2238702..2238935 +
1693563720.9184518-CDS-P-fluviatile_contig20:2238701..22389351693563720.9184518-CDS-P-fluviatile_contig20:2238701..2238935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2238702..2238935 +
1622815916.9264455-CDS-P-fluviatile_contig20:2239146..22392501622815916.9264455-CDS-P-fluviatile_contig20:2239146..2239250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2239147..2239250 +
1693563721.183872-CDS-P-fluviatile_contig20:2239146..22392501693563721.183872-CDS-P-fluviatile_contig20:2239146..2239250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2239147..2239250 +
1622815916.938589-CDS-P-fluviatile_contig20:2239688..22397601622815916.938589-CDS-P-fluviatile_contig20:2239688..2239760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2239689..2239760 +
1693563721.1947103-CDS-P-fluviatile_contig20:2239688..22397601693563721.1947103-CDS-P-fluviatile_contig20:2239688..2239760Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2239689..2239760 +
1622815916.9483788-CDS-P-fluviatile_contig20:2240598..22406731622815916.9483788-CDS-P-fluviatile_contig20:2240598..2240673Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2240599..2240673 +
1693563721.204236-CDS-P-fluviatile_contig20:2240598..22406731693563721.204236-CDS-P-fluviatile_contig20:2240598..2240673Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2240599..2240673 +
1622815916.9598255-CDS-P-fluviatile_contig20:2240914..22409841622815916.9598255-CDS-P-fluviatile_contig20:2240914..2240984Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2240915..2240984 +
1693563721.2131433-CDS-P-fluviatile_contig20:2240914..22409841693563721.2131433-CDS-P-fluviatile_contig20:2240914..2240984Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2240915..2240984 +
1622815916.9699557-CDS-P-fluviatile_contig20:2241448..22416581622815916.9699557-CDS-P-fluviatile_contig20:2241448..2241658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2241449..2241658 +
1693563721.222525-CDS-P-fluviatile_contig20:2241448..22416581693563721.222525-CDS-P-fluviatile_contig20:2241448..2241658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2241449..2241658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4404.1

>prot_P-fluviatile_contig20.4404.1 ID=prot_P-fluviatile_contig20.4404.1|Name=mRNA_P-fluviatile_contig20.4404.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=255bp
MVASKARMHTGATLLVSFLVLLSCFPATCKQWGKKSLSSPSSIRGVDISP
RAAAAGGYKRSGWIQDFCSKPGNEFFAEVPVSFIRERMNTIEIGRGVDIP
YMEEALAVILDERCLNVGEASIVESSAALLYGLLHARFLVSPGGLKVLLD
MFSKGAFGRCPRVYCQGQAVLPVGETDRPMQSSVKVFCPRCKEIYFPAGN
LRTCDGAFFGTTSFALLLLGWPELKKSPSTSVFVPRVFGFKMHQIGVGCC
ESPG*
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mRNA from alignment at P-fluviatile_contig20:2238690..2241781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4404.1 ID=mRNA_P-fluviatile_contig20.4404.1|Name=mRNA_P-fluviatile_contig20.4404.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3092bp|location=Sequence derived from alignment at P-fluviatile_contig20:2238690..2241781+ (Porterinema fluviatile SAG_2381)
GACACGACTAACATGGTGGCATCGAAAGCAAGAATGCACACCGGCGCTAC CCTGCTCGTATCATTTCTCGTGCTTTTGTCTTGTTTCCCCGCGACCTGTA AGCAATGGGGGAAAAAATCACTGAGCAGTCCTTCGTCGATTAGAGGGGTG GATATTTCGCCACGTGCCGCTGCCGCCGGTGGGTACAAGAGATCGGGATG GATACAGGATTTTTGTAGCAAACCAGGCAACGAGTTCTTTGCCGAGGTGA GGAGATAGAACAGAGTCCAGGAACTAGACCAAACTTGCTTCATCGAAAGG TGGAAGATGGCTCAACGAATGCATTCATCTATCCATCCATCCGTCCATCC ATCCATCCTTCTTTCTGTGGCTCCACCAGGATTGCGAGATCTGCTTGTAG CGCTATTCATATTTCGCTTGCACACCAACATGTGCAAGGATGACTTACGT GCCGCAGGTCCCGGTTTCCTTCATCCGGGAGCGCATGAACACAATCGAAA TCGGCAGGGGTGTGGACATACCGTACATGGAGGAAGCGCTGGCGGTAATC CTAGACGAGAGGTGATCATCTGCCCACGTATTTTTCGAATGCAGTGCTGG CCCAATTGCAAGAAACATGTTCCTAAAAAATCGAGGCTCAGATTTTTGAA ACAATGAGCAAATCCCGTAAGAAATTGGACTCAGCTGCTGGCGCAACTCT AAATCCTCTATAATAGGCTGCTTTTAGGCGGTGGGATCAAAAAAGAAAAT GAGCCACGCTGAAATAGACGTTTCTTCATGACGGGGTGATACTGTATGGT ACTTGCAGCCGCGAGGGATCGTGACATTGCCAAAACATCAGCCAGCTATC AGCAGTCGAGATTCCCCGTGTCGATTTGCCGTCAGGAGTCGAACGACGAC ACCCCATGTAAAACTTGCGGGACTGAACGGAAGGAACGAGGCTGATCCGC CTGGAATCCTGATGATAGGTCGGGCTTTCTCATACCCTCTGCTCGACAGG TGTTTAAACGTAGGCGAGGCGTCCATCGTGGAATCTTCAGCAGCGCTCCT TTACGGATTGCTGCACGCCAGGTGGGAGGTGTAACAGAAAGTCCGAAACT AAGAAACGCCCTGTCGAGGACTATTATCTTTTTTCGGTCAAACAACCCAG ACGAAAACTAAGCTCCTACATTTCTGGACTGCCGGATCCTGGTGATTTAT TGAATCACATTGTTCTTAACTTCCCTGCTTCCTCCACGTGCATCGCGTCC TGACAAATGATAACTTCGTCTAGCTCTCATGACCACCACTATCTCGCTCC CTACTTCTCGGCCTCGGAAGAGTGTTTCGCTAATTAAACCGAAAAGTACA CCAAATTTACAGCCAGCGGAAAGCAATTTAAGCCCGCAGTTGGAGGTTGG GCGCTAGGGGTTTGGGGACACGCGTTGAATGACTGGGATGGTTCCCACGT CCAAAGCTTGGCCCTCATTTCGTATGCTACGGCGCATTCTATCGCTCTAA CACGTACGCTCAGGAGCATTTACGTGCTTTTTATCAAAAGCCGCATCTTC TCTAATTATGAAGTACTTTTTATGGTCGACTCGTCATTTTTGCGACGATC TCCGCCACAACAGCGGAAGTAGAGCAAAGTATTTCTGTTTCAAGTGCCCG CACTTTCGCCACTCACTTATCTTGTCTGATGAGCGTAGAACAAAGGTATT TGCCAAGTGCCTTATATCTCCATTGCGGCCGTGGTGCTGAAGTGTGCCGA CTTGCTCTGGGGAAGCACCTTCATTGTAAACCGGCACTTCATTTAGTTGA GTGACAACATTTACGTCCAATATTTGCCATGAGGGCGATACCAACCTCCC GTTCATCCCAGGGCTTTTCAGACCACCCCTTTTCGCTTGCGTGGATCGTA CACGTTCAGATTTTTAGTGAGCCCTGGTGGGTTGAAAGTGTTGCTGGACA TGTTCTCCAAAGGAGCCTTCGGCAGGTGTCCCAGGTGAAGTTCGAAGTAC ACATCGACAAAGCGTCTCCTTCTGATTTCGCCCAACTGCGGCCATCTTTA GAAAGGAGACCAGGTATCAAGTGAAAAATGTGTGTGTTCATCTGAGTGAA AGTGGGAGGACTAACACGGAACCTCCTTTTTAGGCGAAATCTTAACATTT CATTCGCGTGAAAAAGCACCAGCCACACCATGTCGAAGCTGCCCAGCTGA TGAGCGGCCTTGCTTGTCCGTGCAGAGTTTACTGCCAAGGTCAAGCCGTA CTGCCGGTGGGGGAAACTGATAGGCCAATGCAAAGCAGCGTGAAGGTGCG GGTCGACTTTAGATGCAATGAATGGCCGACGTATTGCTTTCTGGCCCCAT TGAGTGTCAGGGCACGTCGCCGATACTCCCGTACGTGCAAGTCTGGGTCT TGAAAGTGCAAAATGCCACACCGCAGCGCATTTTCCCAAAAGCTGTCGGC AAGTCGGTTTTGAATTGACAGAGGGTCACAAGATCTGACTCGATCTGCTC GTGGACCAGACATCTCTGCTCAAGGTTCTGTGCTTCCAGGAAGTCTGCAA ATCTTGCTCCCATCACTTGAATATTTCGTCGAGTTTGAAGGTGGGCGCTT CATTTGATCTGCTCCGCAACTTGGAACGAAGTCAGAAGCGCCTTCTCGAG TGTGGGCTCGCTTTTTTTACCCAGTGAGTAGCAAGTTGACTAGATAAGTT CACTCGGCTGGGCAGACATTCTTGAGTCATCTTTCGCTGTGCGGGCGGTG ATTTTGCAGGTGTTTTGCCCTCGATGCAAAGAAATCTACTTCCCTGCGGG CAACTTGCGGACATGCGATGGGGCGTTTTTCGGGACCACAAGTTTTGCCC TCCTGCTTTTGGGATGGCCAGAGCTCAAGAAATCGCCAAGCACCTCTGTT TTTGTGCCCCGCGTGTTCGGGTTCAAGATGCATCAAATTGGTGTAGGTTG CTGCGAAAGCCCAGGCTAGGCAGGGATCAAACCAAACCTAGCAAATCCTG TGGGAGTGGTGTTCGGCAGCAGGGTAGATCCGTGGATGAGAAGTCTCCAT GCGCATAGTGTGATTGATTTCAGGGGACAAAGGATACCAATA
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:2238690..2241781+

>mRNA_P-fluviatile_contig20.4404.1 ID=mRNA_P-fluviatile_contig20.4404.1|Name=mRNA_P-fluviatile_contig20.4404.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1530bp|location=Sequence derived from alignment at P-fluviatile_contig20:2238690..2241781+ (Porterinema fluviatile SAG_2381)
ATGGTGGCATCGAAAGCAAGAATGCACACCGGCGCTACCCTGCTCGTATC
ATTTCTCGTGCTTTTGTCTTGTTTCCCCGCGACCTGTAAGCAATGGGGGA
AAAAATCACTGAGCAGTCCTTCGTCGATTAGAGGGGTGGATATTTCGCCA
CGTGCCGCTGCCGCCGGTGGGTACAAGAGATCGGGATGGATACAGGATTT
TTGTAGCAAACCAGGCAACGAGTTCTTTGCCGAGATGGTGGCATCGAAAG
CAAGAATGCACACCGGCGCTACCCTGCTCGTATCATTTCTCGTGCTTTTG
TCTTGTTTCCCCGCGACCTGTAAGCAATGGGGGAAAAAATCACTGAGCAG
TCCTTCGTCGATTAGAGGGGTGGATATTTCGCCACGTGCCGCTGCCGCCG
GTGGGTACAAGAGATCGGGATGGATACAGGATTTTTGTAGCAAACCAGGC
AACGAGTTCTTTGCCGAGGTCCCGGTTTCCTTCATCCGGGAGCGCATGAA
CACAATCGAAATCGGCAGGGGTGTGGACATACCGTACATGGAGGAAGCGC
TGGCGGTAATCCTAGACGAGAGGTCCCGGTTTCCTTCATCCGGGAGCGCA
TGAACACAATCGAAATCGGCAGGGGTGTGGACATACCGTACATGGAGGAA
GCGCTGGCGGTAATCCTAGACGAGAGGTGTTTAAACGTAGGCGAGGCGTC
CATCGTGGAATCTTCAGCAGCGCTCCTTTACGGATTGCTGCACGCCAGGT
GTTTAAACGTAGGCGAGGCGTCCATCGTGGAATCTTCAGCAGCGCTCCTT
TACGGATTGCTGCACGCCAGATTTTTAGTGAGCCCTGGTGGGTTGAAAGT
GTTGCTGGACATGTTCTCCAAAGGAGCCTTCGGCAGGTGTCCCAGATTTT
TAGTGAGCCCTGGTGGGTTGAAAGTGTTGCTGGACATGTTCTCCAAAGGA
GCCTTCGGCAGGTGTCCCAGAGTTTACTGCCAAGGTCAAGCCGTACTGCC
GGTGGGGGAAACTGATAGGCCAATGCAAAGCAGCGTGAAGAGTTTACTGC
CAAGGTCAAGCCGTACTGCCGGTGGGGGAAACTGATAGGCCAATGCAAAG
CAGCGTGAAGGTGTTTTGCCCTCGATGCAAAGAAATCTACTTCCCTGCGG
GCAACTTGCGGACATGCGATGGGGCGTTTTTCGGGACCACAAGTTTTGCC
CTCCTGCTTTTGGGATGGCCAGAGCTCAAGAAATCGCCAAGCACCTCTGT
TTTTGTGCCCCGCGTGTTCGGGTTCAAGATGCATCAAATTGGTGTAGGTT
GCTGCGAAAGCCCAGGCTAGGTGTTTTGCCCTCGATGCAAAGAAATCTAC
TTCCCTGCGGGCAACTTGCGGACATGCGATGGGGCGTTTTTCGGGACCAC
AAGTTTTGCCCTCCTGCTTTTGGGATGGCCAGAGCTCAAGAAATCGCCAA
GCACCTCTGTTTTTGTGCCCCGCGTGTTCGGGTTCAAGATGCATCAAATT
GGTGTAGGTTGCTGCGAAAGCCCAGGCTAG
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