mRNA_P-fluviatile_contig20.4403.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4403.1
Unique NamemRNA_P-fluviatile_contig20.4403.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: D7FKU6_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU6_ECTSI)

HSP 1 Score: 618 bits (1593), Expect = 2.090e-217
Identity = 326/427 (76.35%), Postives = 352/427 (82.44%), Query Frame = 2 
Query:   35 VRMLTRTPAGRVVRTRGLA---------YMSTEAGHMSPVLSADGESAPGAATGEEGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKDFQ 1288
            +R   RT   RVVRT+ +A              AG M+ + +++  S+   A G+E SLK  VKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKY+NFFFVVDLHAITVPQDPK LKAGVINAAATYLAAGIDPEKSKVF+QSHV AHAEL+WLLTC TPINWLE+MIQFKEKK+KQG+NVG+GLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRF+       C +    F  P+                       ALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVI+KKLR+CKTDM++GLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEV DMSWGTFKPLLADATVEHLRPLQ+RYKDILEDRSYLNKVLRDGAEAAD VASETLGWAK+AMGISSLKDFQ
Sbjct:    1 MRTSLRTSPARVVRTQAVAPRAWLRKGGQQRGRAG-MTSMSASEVASSTDVAPGKETSLKVPVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYDNFFFVVDLHAITVPQDPKNLKAGVINAAATYLAAGIDPEKSKVFVQSHVGAHAELTWLLTCATPINWLEKMIQFKEKKTKQGENVGTGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFNDQF----CKRRRKTFKDPQ-----------------------ALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVIAKKLRRCKTDMHQGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVGDMSWGTFKPLLADATVEHLRPLQARYKDILEDRSYLNKVLRDGAEAADEVASETLGWAKEAMGISSLKDFQ 399
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A836CM54_9STRA (Tryptophan--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM54_9STRA)

HSP 1 Score: 484 bits (1245), Expect = 4.180e-165
Identity = 243/373 (65.15%), Postives = 289/373 (77.48%), Query Frame = 2 
Query:  173 EGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQ-DKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKDFQ 1288
            EG+ K   K+RI+SGVQPTG+LH GNYLGAIKQWV  Q D YENFF  VDLHAITVP DPK+LK   + AAATYLAAG+DP KSK+F+QSHV AH+EL+WLL C+TP++WLERMIQ+KEK  KQG+NVG GL  YPVLMA+DILLY+ DLVPVGEDQRQHLELTRD+ARRF+       C +   +   P                        ALI+K+GARVMSL DGTSKMSKSDP +GSRINLTDS DVI++K++KCKTD + GLEW NP+RPECTNLLT+YQA++G+TREEV  EV  M WG FKPLLADA V HL P+Q RY++I++D++YL++VLR+GAEAAD VAS+TL WAKDAMG  SLKD Q
Sbjct:   23 EGAAKVARKQRILSGVQPTGSLHLGNYLGAIKQWVARQEDGYENFFCAVDLHAITVPHDPKKLKQDTMMAAATYLAAGVDPAKSKIFVQSHVSAHSELTWLLNCMTPMSWLERMIQYKEKARKQGENVGVGLFDYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQY----CKRKRPVLKEPT-----------------------ALILKDGARVMSLQDGTSKMSKSDPNDGSRINLTDSADVIARKIKKCKTDAFDGLEWGNPERPECTNLLTLYQALSGQTREEVEKEVTGMRWGAFKPLLADAAVAHLSPIQLRYEEIMQDKAYLHQVLREGAEAADEVASQTLSWAKDAMGFCSLKDLQ 368
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A6V1Q501_HETAK (Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q501_HETAK)

HSP 1 Score: 464 bits (1195), Expect = 6.690e-157
Identity = 232/372 (62.37%), Postives = 283/372 (76.08%), Query Frame = 2 
Query:  173 EGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKDFQ 1288
            E  +K   KKR++SGVQPTG+LH GNYLGAI+QWV NQD+YENFF VVDLHAIT P DPK+LK   + +AA YLAAGIDP KS +F+QSHV AHAEL+WLL CVTP+NWLERMIQFKEK  KQG+NVG GL  YPVLMA+DILLY+ D VPVGEDQRQHLELTRD+A RF+     F   K   +F +P TP                      LI +EGARVMSL DGTSKMSKS   + SRINL DSP+VI +K++KCKTD ++G+EWDNP+RPECTNLLTIYQA TGK++E V  EV +M+WG FKP+LADA V+HL P+Q+RY +++ D ++LN+VLR+GA AAD VA +TL W K+AMG ++L+D +
Sbjct:   65 ETEIKVERKKRVLSGVQPTGSLHLGNYLGAIRQWVKNQDEYENFFCVVDLHAITAPHDPKELKKSTLQSAALYLAAGIDPAKSNIFVQSHVTAHAELAWLLNCVTPMNWLERMIQFKEKARKQGENVGVGLFDYPVLMAADILLYQTDCVPVGEDQRQHLELTRDIAGRFNDQ---FVKRKMRPVFKQP-TP----------------------LIAEEGARVMSLQDGTSKMSKSAENDNSRINLNDSPEVIRRKIKKCKTDQFQGMEWDNPERPECTNLLTIYQACTGKSKEAVLAEVGEMNWGAFKPVLADAVVDHLAPIQARYAELMADPTHLNRVLREGAAAADEVAQQTLLWTKNAMGFTTLEDLE 410
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A7S1TX50_9STRA (Tryptophan--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX50_9STRA)

HSP 1 Score: 462 bits (1188), Expect = 1.640e-156
Identity = 227/359 (63.23%), Postives = 276/359 (76.88%), Query Frame = 2 
Query:  203 RIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRF-DSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSL 1276
            R++SGVQPTGNLH GNYLGAI+QWV NQD Y+N+F VVDLHAIT+P DPKQL+   + AAATYLAAGIDP KSK+F+QSHVRAHAEL+WLL C+TPINWLERMIQ+KEK  KQG+NVG GL  YPVLMASDILLY+ DLVPVGEDQ+QHLELTRD+ARR+ D  C   +  K   +F  PE                       ALIVKEGAR+MSL DGTSKMSKS   E SRI+LTD+PDVI++K++KCKTD ++G+EWDNP+RPE  NLL IYQAV+G +RE +  EV +M+WG FKPLL DA VEHL P+Q++Y +++ D  YL+ VL+DGA+ A+ VA  TL WAK+ MG ++L
Sbjct:   29 RVLSGVQPTGNLHLGNYLGAIRQWVQNQDMYDNYFCVVDLHAITMPHDPKQLEKDTLEAAATYLAAGIDPAKSKIFVQSHVRAHAELTWLLNCITPINWLERMIQYKEKAKKQGENVGVGLFDYPVLMASDILLYQADLVPVGEDQKQHLELTRDIARRYNDMFCKKGK--KVRRVFREPE-----------------------ALIVKEGARIMSLQDGTSKMSKSAENENSRISLTDTPDVIARKIKKCKTDQFQGIEWDNPERPEAANLLNIYQAVSGLSREAILAEVSEMNWGAFKPLLTDAVVEHLSPIQTKYNEVMADPVYLHGVLKDGADGANEVAEATLSWAKNGMGFANL 362
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A6U5CKF4_HEMAN (Tryptophan--tRNA ligase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5CKF4_HEMAN)

HSP 1 Score: 461 bits (1186), Expect = 1.120e-154
Identity = 222/368 (60.33%), Postives = 280/368 (76.09%), Query Frame = 2 
Query:  185 KSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCF--KHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKD 1282
            K  VKKR++SGVQPTGNLH GNYLGAI+QWV NQD+YEN+FFVVDLHAIT+P  P +LK    +  A YLA GIDP KSK+FIQSHV  HAEL WLL CVTP+ W+E+MIQ+KEK  KQG++V  GL  YP+LMA+DILLY+  LVPVGEDQRQHLEL+RD+ARRF+      +    K   +F  PE                       ALIVKEGAR+MSL DGTSKMSKSDP EGSRINL+DSPDVI KK+++CKTD + G+EWDNP+RPECTNLL I+QA +G++RE++  EV+DM WG FKP+LA+  VEHL P+Q+RY+++++D++YL++VLR+GAE A+ VA++T+ W K+AMG +S  D
Sbjct:  123 KPAVKKRVISGVQPTGNLHLGNYLGAIRQWVKNQDEYENYFFVVDLHAITMPHSPAELKKASYDIVALYLACGIDPTKSKIFIQSHVTQHAELCWLLNCVTPMGWMEKMIQYKEKAKKQGESVSVGLFDYPILMAADILLYQAQLVPVGEDQRQHLELSRDIARRFNDLYCKKKSMPAKGRRVFRDPE-----------------------ALIVKEGARIMSLEDGTSKMSKSDPSEGSRINLSDSPDVIRKKIKRCKTDNFDGIEWDNPERPECTNLLNIFQACSGRSREDILEEVKDMRWGEFKPVLAEVVVEHLAPIQARYQELVDDKTYLHQVLREGAEGAEEVAAQTMQWTKNAMGFTSRAD 467
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A7S0VG95_9CRYP (Tryptophan--tRNA ligase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VG95_9CRYP)

HSP 1 Score: 458 bits (1178), Expect = 1.750e-153
Identity = 231/401 (57.61%), Postives = 288/401 (71.82%), Query Frame = 2 
Query:  104 EAGHMSPVL------SADGESAPGAATGEEGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCF--KHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKD 1282
            EAG  SP L      S D +    A   E+G  K  VKKR++SGVQPTGNLH GNYLGAI+QW  NQD+YEN+FFVVDLHAIT+P  P +L     +  A YLA GIDP KS++FIQSHV  HAEL WLL CVTP+ W+E+MIQ+KEK  KQG++V  GL  YP+LMA+DIL+Y+  LVPVGEDQRQHLEL RD+ARRF+      +    K   +F  PE                       ALIVKEGAR+MSL DG SKMSKSDP EGSRINL+DS +VI KK+++CKTD ++G+EWDNPDRPECTNLL I+QA +G+TRE++  EV DM WG FKPLLAD  V+HL P+Q+RYK++++D++YL++VLR+GAE A+ VA++TL W K+AMG +S  D
Sbjct:   91 EAGLRSPSLVACRAASTDAKEEKKAEEEEDG--KPAVKKRVISGVQPTGNLHLGNYLGAIRQWAQNQDEYENYFFVVDLHAITMPHSPAELTQSSYDIVALYLACGIDPTKSRIFIQSHVPQHAELCWLLNCVTPMGWMEKMIQYKEKAKKQGESVSVGLFDYPILMAADILIYQAQLVPVGEDQRQHLELARDIARRFNDLYCKKKSMPAKGRRVFRDPE-----------------------ALIVKEGARIMSLEDGRSKMSKSDPSEGSRINLSDSEEVIRKKIKRCKTDNFEGIEWDNPDRPECTNLLNIFQACSGRTREDILAEVSDMKWGEFKPLLADVVVDHLAPIQARYKELVDDKTYLHQVLREGAEGAEEVAAQTLTWTKNAMGFTSRSD 466
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A7S4DXD9_9EUKA (Tryptophan--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXD9_9EUKA)

HSP 1 Score: 436 bits (1121), Expect = 2.520e-145
Identity = 223/373 (59.79%), Postives = 274/373 (73.46%), Query Frame = 2 
Query:  173 EGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRF-DSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKDFQ 1288
            E + K   KKR++SG+QPTG++H GNYLGA+KQWVDNQDKY+NFF +VDLHAITVP  PK+LK  V   AA YLA GIDP KSK+FIQSHV AH+EL+WLL C TP+NWLERMIQ+KEK  KQGD+V   LL YPVLMASDILLY+ DLVPVGEDQ+QHLELTRD+ARRF D  C   +  K                  L  ++R + F   + L+ KE ARVMSL DGTSKMSKS P E SRINL DSPDVI +K++KCKTD   G+E+ NP+RPE TNLLT+Y   TG+  E++  EV DMSWG FKPL+ADA VE LRP++ RY ++ +D   + +VL+DGAEAA+ VAS T  WA+ AMG +S+++ +
Sbjct:   73 EATEKPERKKRVLSGIQPTGSVHLGNYLGAMKQWVDNQDKYDNFFCIVDLHAITVPHVPKELKKSVAQTAALYLACGIDPAKSKIFIQSHVPAHSELTWLLNCATPLNWLERMIQYKEKAKKQGDSVSVALLDYPVLMASDILLYQADLVPVGEDQKQHLELTRDIARRFNDQYCKGNQAKK------------------LRGTSRPV-FKEPEVLMAKEAARVMSLQDGTSKMSKSAPSELSRINLLDSPDVIREKIKKCKTDSELGIEYKNPNRPEATNLLTMYSQATGRPVEDLLGEVSDMSWGQFKPLVADALVEQLRPIRERYDEVTKDPEVIAQVLQDGAEAANEVASATASWARQAMGFTSVEEIK 426
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: L1J3P0_GUITC (Tryptophan--tRNA ligase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J3P0_GUITC)

HSP 1 Score: 430 bits (1106), Expect = 2.310e-144
Identity = 217/373 (58.18%), Postives = 268/373 (71.85%), Query Frame = 2 
Query:  170 EEGSLKSLVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCF--KHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGISSLKD 1282
            +E   +S V+KR++SGVQPTGNLH GNYLGAI+QWV NQD+YEN+F VVDLHAIT P  P +L+   ++ AA YLA+GIDP KSKVFIQSHV AHAEL WLL CVTP+NW+E+MIQ+KEK  KQG++V  GL  YP+LMA+DILLY+  LVPVGEDQRQHLEL RD+ARRF+      +    K   +F  PE                       ALIVKEGARVMSL DGTSKMSKSDP + SRINL D P+VI  ++           EWDNP+RPECTNLL IYQ+VTGK++E++  EVQ M WG FKPLL++A + HL P+Q +YKD++ED++YL +VL DGA +AD +A +TL W K+AMG +S  D
Sbjct:   11 DEQKQESSVRKRVLSGVQPTGNLHLGNYLGAIRQWVKNQDEYENYFCVVDLHAITAPHVPSELQKSSLDIAALYLASGIDPAKSKVFIQSHVPAHAELCWLLNCVTPMNWMEKMIQYKEKAKKQGESVSIGLFDYPILMAADILLYQAQLVPVGEDQRQHLELARDIARRFNDQYCKKKSMPAKGRRVFREPE-----------------------ALIVKEGARVMSLQDGTSKMSKSDPSDLSRINLLDPPEVIGGRI-----------EWDNPERPECTNLLNIYQSVTGKSKEDILSEVQHMQWGQFKPLLSEAVIAHLAPIQVKYKDLMEDQTYLKQVLLDGANSADLIAGQTLSWTKNAMGFTSKSD 349
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A1Z5JF22_FISSO (Tryptophan--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF22_FISSO)

HSP 1 Score: 432 bits (1112), Expect = 3.820e-144
Identity = 224/371 (60.38%), Postives = 269/371 (72.51%), Query Frame = 2 
Query:  200 KRIVSGVQPTGNLHFGNYLGAIKQWVDNQD------------KYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRF-DSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVT-GKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGIS 1270
            KR++SGVQPTG+LH GNYLGAI+QWV+ QD            + ENFF VVDLHAIT+P DP +L    +++AA YLAAGIDP KS+VF+QSHV AHAEL+WLL C+TP+NWLERMIQFKEK  KQG++VG GL  YPVLMA+DILLY+ D +PVGEDQRQHLEL RD++RRF D  C   +  K       P  P                F+   A+IVK GAR+MSL+DG SKMSKSDP + SRIN+ D PDVI +K++KCKTD   GLEWDNPDRPE TNLLTI+QAV  G+TRE++  EV DM+WG FKP+LADA V HL P+Q RYK I ED  YL +VL+DGA+AAD +AS TL  AK AMG +
Sbjct:   67 KRVLSGVQPTGSLHLGNYLGAIRQWVEFQDNAETQDEEGNLIRTENFFCVVDLHAITMPHDPTELTESTLSSAALYLAAGIDPSKSRVFVQSHVTAHAELTWLLNCITPMNWLERMIQFKEKARKQGESVGVGLFDYPVLMAADILLYQADQIPVGEDQRQHLELARDISRRFHDLFCKGNKYKKLCKAAGVPSRPV---------------FVEPNAMIVKSGARIMSLSDGNSKMSKSDPNDASRINILDPPDVIREKIKKCKTDAQVGLEWDNPDRPEATNLLTIFQAVQPGRTREDILNEVGDMTWGQFKPVLADAIVNHLEPIQERYKAIREDDEYLWQVLKDGADAADEIASRTLKHAKIAMGFA 422
[Close]
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Match: A0A7S4EDW2_9STRA (Tryptophan--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDW2_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 7.540e-144
Identity = 216/358 (60.34%), Postives = 261/358 (72.91%), Query Frame = 2 
Query:  197 KKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVPQDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTPINWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFDSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRIIRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKKLRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWGTFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETLGWAKDAMGIS 1270
            ++R++SGVQPTG LH GNYLGAI+QWV  QD Y++FF VVDLHAIT P +PK L+   ++AAA Y+AAGIDPEKS +F+QSHV AHAEL WLL C+TPINWLERMIQ+KEKK KQG+NVG GL  YPVLMA+DILLY+  LVPVGEDQRQHLELTRD+ARRF        C +   +F  P                       KALIVKEGARVMSLTDG +KMSKS  ++ SRINL D P  I++K++KCK+D + GLEWDNP+RPE TNLL IYQAVTG  R+ +  EV D+SWG FKP LADA V HL P+Q +Y ++  D++YL+ VL+ GAE AD  A+ TL  AK AMG +
Sbjct:   42 RERVLSGVQPTGTLHLGNYLGAIRQWVQFQDDYDSFFCVVDLHAITAPHNPKLLQQETLDAAALYIAAGIDPEKSPIFVQSHVTAHAELCWLLNCMTPINWLERMIQYKEKKQKQGENVGVGLFDYPVLMAADILLYQAGLVPVGEDQRQHLELTRDIARRFHD----LYCKRKKRVFREP-----------------------KALIVKEGARVMSLTDGRAKMSKSAELDNSRINLNDDPATIARKIKKCKSDEFTGLEWDNPERPEATNLLNIYQAVTGMERDAILAEVGDLSWGGFKPRLADAVVAHLEPIQLKYAEVSADKAYLSGVLKSGAERADETATRTLDAAKAAMGFA 372
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU6_ECTSI2.090e-21776.35Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CM54_9STRA4.180e-16565.15Tryptophan--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
A0A6V1Q501_HETAK6.690e-15762.37Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
A0A7S1TX50_9STRA1.640e-15663.23Tryptophan--tRNA ligase n=1 Tax=Phaeomonas parva T... [more]
A0A6U5CKF4_HEMAN1.120e-15460.33Tryptophan--tRNA ligase n=1 Tax=Hemiselmis anderse... [more]
A0A7S0VG95_9CRYP1.750e-15357.61Tryptophan--tRNA ligase n=1 Tax=Hemiselmis tepida ... [more]
A0A7S4DXD9_9EUKA2.520e-14559.79Tryptophan--tRNA ligase n=1 Tax=Lotharella globosa... [more]
L1J3P0_GUITC2.310e-14458.18Tryptophan--tRNA ligase n=2 Tax=Guillardia theta T... [more]
A0A1Z5JF22_FISSO3.820e-14460.38Tryptophan--tRNA ligase n=2 Tax=Fistulifera solari... [more]
A0A7S4EDW2_9STRA7.540e-14460.34Tryptophan--tRNA ligase n=1 Tax=Pelagomonas calceo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:2233654..2238503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score621.7
Seed ortholog evalue2.5e-175
Seed eggNOG ortholog2880.D7FKU6
Preferred nameWARS2
KEGG rclassRC00055,RC00523
KEGG koko:K01867,ko:K02946,ko:K13346
KEGG TC3.A.20.1
KEGG ReactionR03664
KEGG Pathwayko00970,ko03010,ko04146,map00970,map03010,map04146
KEGG ModuleM00178,M00179,M00359,M00360
GOsGO:0000166,GO:0000959,GO:0001568,GO:0001570,GO:0001944,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030154,GO:0030554,GO:0031974,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048514,GO:0048731,GO:0048856,GO:0048869,GO:0070013,GO:0070127,GO:0070183,GO:0071704,GO:0071944,GO:0072358,GO:0072359,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.tryptophanyl-tRNA aminoacylation
EggNOG OGsCOG0180@1,KOG2713@2759
EC6.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016,ko04121
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAminoacyl-tRNA synthetase, class Ic
Ec32 orthologEc-17_001430.1
Exons10
Model size1779
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4403.1prot_P-fluviatile_contig20.4403.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 2234142..2238463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815916.7331145-UTR-P-fluviatile_contig20:2233653..22341411622815916.7331145-UTR-P-fluviatile_contig20:2233653..2234141Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2233654..2234141 -
1693563720.7808053-UTR-P-fluviatile_contig20:2233653..22341411693563720.7808053-UTR-P-fluviatile_contig20:2233653..2234141Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2233654..2234141 -
1622815916.8708613-UTR-P-fluviatile_contig20:2238463..22385031622815916.8708613-UTR-P-fluviatile_contig20:2238463..2238503Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2238464..2238503 -
1693563720.8980112-UTR-P-fluviatile_contig20:2238463..22385031693563720.8980112-UTR-P-fluviatile_contig20:2238463..2238503Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2238464..2238503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815916.7448497-CDS-P-fluviatile_contig20:2234141..22342431622815916.7448497-CDS-P-fluviatile_contig20:2234141..2234243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234142..2234243 -
1693563720.797181-CDS-P-fluviatile_contig20:2234141..22342431693563720.797181-CDS-P-fluviatile_contig20:2234141..2234243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234142..2234243 -
1622815916.7550817-CDS-P-fluviatile_contig20:2234478..22345351622815916.7550817-CDS-P-fluviatile_contig20:2234478..2234535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234479..2234535 -
1693563720.8044224-CDS-P-fluviatile_contig20:2234478..22345351693563720.8044224-CDS-P-fluviatile_contig20:2234478..2234535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234479..2234535 -
1622815916.768414-CDS-P-fluviatile_contig20:2234783..22348851622815916.768414-CDS-P-fluviatile_contig20:2234783..2234885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234784..2234885 -
1693563720.8119981-CDS-P-fluviatile_contig20:2234783..22348851693563720.8119981-CDS-P-fluviatile_contig20:2234783..2234885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2234784..2234885 -
1622815916.7807071-CDS-P-fluviatile_contig20:2235245..22353351622815916.7807071-CDS-P-fluviatile_contig20:2235245..2235335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2235246..2235335 -
1693563720.8279989-CDS-P-fluviatile_contig20:2235245..22353351693563720.8279989-CDS-P-fluviatile_contig20:2235245..2235335Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2235246..2235335 -
1622815916.7975714-CDS-P-fluviatile_contig20:2235789..22359861622815916.7975714-CDS-P-fluviatile_contig20:2235789..2235986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2235790..2235986 -
1693563720.839365-CDS-P-fluviatile_contig20:2235789..22359861693563720.839365-CDS-P-fluviatile_contig20:2235789..2235986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2235790..2235986 -
1622815916.8086805-CDS-P-fluviatile_contig20:2236307..22365091622815916.8086805-CDS-P-fluviatile_contig20:2236307..2236509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2236308..2236509 -
1693563720.8484375-CDS-P-fluviatile_contig20:2236307..22365091693563720.8484375-CDS-P-fluviatile_contig20:2236307..2236509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2236308..2236509 -
1622815916.819974-CDS-P-fluviatile_contig20:2236855..22369601622815916.819974-CDS-P-fluviatile_contig20:2236855..2236960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2236856..2236960 -
1693563720.8579838-CDS-P-fluviatile_contig20:2236855..22369601693563720.8579838-CDS-P-fluviatile_contig20:2236855..2236960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2236856..2236960 -
1622815916.8359025-CDS-P-fluviatile_contig20:2237267..22374171622815916.8359025-CDS-P-fluviatile_contig20:2237267..2237417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2237268..2237417 -
1693563720.86735-CDS-P-fluviatile_contig20:2237267..22374171693563720.86735-CDS-P-fluviatile_contig20:2237267..2237417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2237268..2237417 -
1622815916.8498125-CDS-P-fluviatile_contig20:2237854..22380571622815916.8498125-CDS-P-fluviatile_contig20:2237854..2238057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2237855..2238057 -
1693563720.8768597-CDS-P-fluviatile_contig20:2237854..22380571693563720.8768597-CDS-P-fluviatile_contig20:2237854..2238057Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2237855..2238057 -
1622815916.860815-CDS-P-fluviatile_contig20:2238420..22384631622815916.860815-CDS-P-fluviatile_contig20:2238420..2238463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2238421..2238463 -
1693563720.889987-CDS-P-fluviatile_contig20:2238420..22384631693563720.889987-CDS-P-fluviatile_contig20:2238420..2238463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2238421..2238463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4403.1

>prot_P-fluviatile_contig20.4403.1 ID=prot_P-fluviatile_contig20.4403.1|Name=mRNA_P-fluviatile_contig20.4403.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=417bp
MLTRTPAGRVVRTRGLAYMSTEAGHMSPVLSADGESAPGAATGEEGSLKS
LVKKRIVSGVQPTGNLHFGNYLGAIKQWVDNQDKYENFFFVVDLHAITVP
QDPKQLKAGVINAAATYLAAGIDPEKSKVFIQSHVRAHAELSWLLTCVTP
INWLERMIQFKEKKSKQGDNVGSGLLTYPVLMASDILLYRPDLVPVGEDQ
RQHLELTRDLARRFDSTCAAFRCFKHGSLFSRPETPTSQILSYLTNSTRI
IRFLLRKALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVISKK
LRKCKTDMYKGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVQDMSWG
TFKPLLADATVEHLRPLQSRYKDILEDRSYLNKVLRDGAEAADTVASETL
GWAKDAMGISSLKDFQ*
back to top

mRNA from alignment at P-fluviatile_contig20:2233654..2238503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4403.1 ID=mRNA_P-fluviatile_contig20.4403.1|Name=mRNA_P-fluviatile_contig20.4403.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4850bp|location=Sequence derived from alignment at P-fluviatile_contig20:2233654..2238503- (Porterinema fluviatile SAG_2381)
CTGCTTGGCACCGGGCTCTGCTTTCGGCGTCGGCGTACGAATGTTAACTC
GCACGCCAGCGGGGAGAGTCGTGCGTACTCGAGGTGTGCGACTGCTACTT
GCGAGGGTGGACAAGCGTTGCGCAGCCGTGACGCGAGACAAAACACTTGT
TTGTGAAAGTCTTACTATGAGGAACATTGACGCCCACTCTGCTGTGCTCG
CTTTCTGTTGCAATGCTGAAAGCGGGTATTTTGTTCCTCTCATGAGCAGG
CATGGGAGCGGCTCCCGGAACACGCAAAAGTTACACCGACACACTAAAGC
GGGATGCGAGGTGGACAATTTTGTGGCGTGTAAAGTGATGCCTCACCGCA
ACTCTTTCACGATATTATCATCTTGAAGAAACATATTAGTCTACTTATGG
TGCACGAATGGCCAAATCCCATCGTGCTTACGACCGCCGTTGACAGGCTT
AGCCTATATGTCGACTGAAGCTGGACACATGTCTCCGGTATTGTCTGCTG
ACGGTGAGAGTGCCCCGGGTGCTGCCACGGGCGAAGAGGGCAGCTTGAAG
TCCCTCGTCAAGAAACGCATCGTTTCCGGAGTGCAGCCCACAGGAAACCT
CCACTTCGGTAACTACCTGGGAGCCATCAAGCAGTGGGTCGATAACCAGG
TATGCTCGGTATGTTGGCTTCGAGGAAAGGCTTTCATAACGGGGTGGGGT
GGCGATCGTTGCCAACCCCAGGCGGTTTTAGATATCTCAAGCTTCAAGGG
ATCAAGAGACTTGTAGGGTTACGCGGCGTCACGTTCCTTCTTGGGCATTA
ACGTGATAACAGCGACTTCATCGTCGCGGCTTGTAAACGGGATTTTAAAT
TGGCAGTCGCCAAATGTTCTCAGCATCACGTTGATTTGAGGGGAAGTGTC
GATGTAGGTCAAGAGCGTGCTAGCCGAAACCAATCATGCTTGAAATCGTT
TAGAGCATTTCCGAGTCCCTCCTTTCGCCCATATTGCCCTCCCGTTGCAC
ACTGATGTCAGCGAATGGGGCGATCGTCCGTTCAAAAGTTTTGCACATAA
AAATAACCCCGCCTATTCGGCTCCGAAAATATTTAGGACAAGTATGAGAA
TTTTTTCTTCGTGGTGGACCTGCATGCCATCACGGTGCCTCAAGACCCCA
AGCAGCTTAAAGCAGGAGTCATCAACGCAGCTGCTACGTACCTCGCGGCT
GGGATCGACCCAGAGAAATCGAAAGTTTTCATTCAGGTAGACTAAAACGC
TAATTAATATCCTAGTCGCCTGGTGTTTTTATATTTGTGGTCTTGCCCAT
GGCTCGCGGTGTGCTTTTCGTTACCTCACCGGCAGGTACTGTGATAGGCA
ACGTAGACAGCATTCAGCACGGGCGTTAGCCTTGTCGACCCTAGAGCGGT
GCATCTCTGGTGCTCTTGCCGATGTTTTTGCGCCAGATCCTTCCTAGGTG
AGATGCTGGGCTGCCTGACACGGCGTGATCGACCTGCCCGTGGAATTTTT
TACCCTGAAATCACGCCTTGCATCTCCCGGGTTCGCCTCGCAGTCTCACG
TGCGCGCGCATGCGGAGCTATCATGGCTACTGACGTGCGTAACGCCTATC
AACTGGCTGGAGAGAATGATACAGTTCAAGGAAAAGAAGTCTAAGCAGGT
GTGCGATCGTTGTGCATTAATTTGGGCTTGCGTCCTGTTGAAACCGTGCG
GTATCGGCCTTTCCAAAAGCGGAGCGCAAGTTGCGGCGGAGGTGTCGCGT
TGTATCCTCTCTCTCGAACGCTCGCGATATTGTGTAGTACTGCATCGGTG
TCCATGTGCTTTGTCGGGTTCACTTTGCTGAAATGACGCGAAGGCTGTTT
AGGACTTTTTCCATTCAATCTTGTACCTGGTATCAGCAAGGACACTAGTT
CAGTGGATTTCCTGCAATCCCGCTCGACTGGCTATAGCATGTCTTCGACC
GTAAGAATCTGCTGCGTGTGTTATTTTGTACGCTTCGCATGAAGGGTGAC
AACGTGGGAAGTGGTTTGCTTACATATCCGGTGCTCATGGCGTCGGATAT
CTTGCTCTACCGGCCGGACTTGGTCCCTGTTGGAGAAGACCAGCGGCAGC
ACCTGGAGCTCACGAGAGATCTGGCACGAAGGTTCGACAGTACTTGTGCA
GCGTTTAGATGTTTCAAGCACGGCTCGTTGTTCTCTCGGCCAGAAAGTGC
AATGCTCGCGAGTTGGTGGTGCAATCGTGATGAGACATAAGAATGCGAAC
GTCTCCCAAGCTGTCATTGCCGGTGTAATGCTTCGCAGGTTTAACGACCA
GTTTTGCAAGAGAGCAAGGAAGACGTTCAAGGATCCTCAGGTGATTACCA
TGTCGATCCGATTTGTATGATGCACTCTTGAGCACTCGGCCGATTCTCGG
CGTGCAAGAGCGGCGTCTTGGCTGCACATAGAACATGAATGGTGAGATTC
ACGGCAGAAAATTAACACAGACGGTGCTCGACGATAAATGAGTGTCCCGT
TGTGTTGTTTTGCAAAGCACCCACGAGCCAAATCTTGTCGTATCTTACAA
ATTCAACTCGCATTATTCGATTTTTACTGCGAAAGGCGCTGATTGTCAAG
GAGGGTGCCCGTGTGATGTCTCTCACCGACGGCACGTCCAAGATGAGCAA
GTCGGACCCCGTGGAGGGTAGCCGCATCAACCTCACCGATTCGCCGGATG
TCATCTCCAAAAAGGTGAGGAACAGCTGTGGAAAATGCGTTCATTGTCGT
GAGGCATGGCTACGTCAATCCTTAGGTATGGCGGAGCTAGCAGTGGAAGA
ATTGTCAGTTCCTCACGAAGTTTTGAAAGGTTTTGTTTCTGAAATCAGGT
GTTCAAACTTGAAATTTTCCCGTGACCTTGTTTGTCTTCGCGCTGTTCGG
TGTGTGTTGATGATACATTAGGAACCTCGAGAAAAAGGAATGTTGGTGCG
GTTTTCGGTTCAATGTTGAAATGGATATCGGGTACGGAGGGAGTTTATGA
GGCAGCCATGCTCTAAATAACCCTACGTCGCTTCAAAACTGCTAGCGTGA
CGAGGGAGCCGTTCGTGCTGGTAAGACCTCTCCTCTACCCCGTCTTATGT
TTTGGCGGCTGTGACGTGTGCCACGAATCGAAATCGTTTTGTTTCGTAAA
TCGCACCTGTCTCGCCAGCTTCGCAAGTGCAAAACGGATATGTACAAAGG
GCTTGAGTGGGACAACCCCGATCGACCCGAGTGCACTAATCTTCTCACCA
TCTATCAAGTGAGTTACGCGTGCCAGGGTTGCGTGAAACTGTGAACCTCG
TGGTAAAGGTCTGTTTGTACGTTTGTGATGCCTGCAGAATGCAGTAGCTT
GCGTATGGGTGGAAAAAAATTAAGCCTGGTCAGAATAATGAGGGATGAGG
GCTAGAGTTAGATGCCAACCTCCCACTGTCGAATGCCTACCGTATCTCAG
TTTTCCTGCGTAGACGGTCCTCAGAATACGCGGGGACAACGTGGAGTACG
AATTTTATCGACTCTTGTGTGTATAGCTTGTTTCTCGTTGTCTATGATGG
TCGCCAAAAGGGGAACCTGAACCGCGCACATTCTCCCGCTGTTGGCTCCT
CGGTATATTCACGAGCAGGCCGTGACTGGGAAAACCCGCGAAGAGGTCTC
CCTAGAAGTACAAGACATGAGCTGGGGCACTTTCAAGCCCCTTTTGGCGG
ATGCAACAGTGGAGCACCTTGTAAGTTGGTGAATGTTCACTTTCAGTCAG
CATTTCGCGTGCTTGTGGCCGATCATTGTTGCCCACCGTGTCCAGATGCT
GCGGCGCATTTTTCTCAGCCATAACCCGCAATTTAGCTTGGACCAAAATG
GTTGGCACCTGGTTAATTCTTTACTCTACACACACTTGCAAATTTCGTGA
CTAGTGTTACCATGCACTAGCCTAACCCTGCGGTGCTTTTTGTTATGACT
ATCCGCGATGTGCTGCAGAGACCTCTACAATCTCGGTACAAGGATATTCT
TGAGGATCGCTCTTACCTCAACAAGGTGAGCCAGATGCCACTTAGTTTTA
CGAGGTCACCTGTATCGAGTATATCCGACGCCGATAATCCACGGCTCTGT
TTCGCATGCCAGCATCTGATTATTGAAGTGGTGGAAACATGATACCAAAG
ATGCATGCCCATGGTTGTAACCAATCGCGAGTTTTTTGGGGAGGAATGAC
ATGGGTTGTGATAACACTTCTAGCTTATGTGTTTTTGGTTCGCTAACTCT
GCCGTACTAGGTGCTACGAGATGGCGCGGAAGCCGCGGACACGGTGGCAT
CAGAAACGTTAGGATGGGCAAAGGATGCCATGGGTATTTCTTCGCTCAAG
GACTTCCAATAGATGCTGCTGCTGAATTTCAGGACTTCAAGTACATGTGC
TGCCGAATGACGTTTTCTCTGGCGCAATGAAAGTCGGGATTCCCGGCTTA
ATTTGTGGGGTCCCCGAAAGATTCCTTGTTTGGATATGCAAAGCGAAACA
AAATTTTTGAACGCTTGAGAGAATCATTGCGGATCTAGTGTTTGTCGCAT
GCGCCTCTGGTTTTAAACGCTCAACAATGTTCGATTGTCTCACCTCATCG
CGAACAATGTCACACGATGGCGTTTTTGTGTGTGAACGTTGTAAACATGA
CCCTTTGTTTCTGTCCATGTTTTCGCCCAGAAAAAGCCATCACAACCAGC
TAGCTGCGCAGTCTAAGGCGCTTTTCAAAGCCCCCGCCGATGTTTTATTT
TGCCGGTAGTGTCGTCTCATCACGTTCGACAAGACCATTATCACAGAACT
TGTTTCGTGTGTAAGATTCGGTCCGTATGTGTGATGTAGGTGCAGATAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:2233654..2238503-

>mRNA_P-fluviatile_contig20.4403.1 ID=mRNA_P-fluviatile_contig20.4403.1|Name=mRNA_P-fluviatile_contig20.4403.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2502bp|location=Sequence derived from alignment at P-fluviatile_contig20:2233654..2238503- (Porterinema fluviatile SAG_2381)
ATGTTAACTCGCACGCCAGCGGGGAGAGTCGTGCGTACTCGAGATGTTAA
CTCGCACGCCAGCGGGGAGAGTCGTGCGTACTCGAGGCTTAGCCTATATG
TCGACTGAAGCTGGACACATGTCTCCGGTATTGTCTGCTGACGGTGAGAG
TGCCCCGGGTGCTGCCACGGGCGAAGAGGGCAGCTTGAAGTCCCTCGTCA
AGAAACGCATCGTTTCCGGAGTGCAGCCCACAGGAAACCTCCACTTCGGT
AACTACCTGGGAGCCATCAAGCAGTGGGTCGATAACCAGGCTTAGCCTAT
ATGTCGACTGAAGCTGGACACATGTCTCCGGTATTGTCTGCTGACGGTGA
GAGTGCCCCGGGTGCTGCCACGGGCGAAGAGGGCAGCTTGAAGTCCCTCG
TCAAGAAACGCATCGTTTCCGGAGTGCAGCCCACAGGAAACCTCCACTTC
GGTAACTACCTGGGAGCCATCAAGCAGTGGGTCGATAACCAGGACAAGTA
TGAGAATTTTTTCTTCGTGGTGGACCTGCATGCCATCACGGTGCCTCAAG
ACCCCAAGCAGCTTAAAGCAGGAGTCATCAACGCAGCTGCTACGTACCTC
GCGGCTGGGATCGACCCAGAGAAATCGAAAGTTTTCATTCAGGACAAGTA
TGAGAATTTTTTCTTCGTGGTGGACCTGCATGCCATCACGGTGCCTCAAG
ACCCCAAGCAGCTTAAAGCAGGAGTCATCAACGCAGCTGCTACGTACCTC
GCGGCTGGGATCGACCCAGAGAAATCGAAAGTTTTCATTCAGTCTCACGT
GCGCGCGCATGCGGAGCTATCATGGCTACTGACGTGCGTAACGCCTATCA
ACTGGCTGGAGAGAATGATACAGTTCAAGGAAAAGAAGTCTAAGCAGTCT
CACGTGCGCGCGCATGCGGAGCTATCATGGCTACTGACGTGCGTAACGCC
TATCAACTGGCTGGAGAGAATGATACAGTTCAAGGAAAAGAAGTCTAAGC
AGGGTGACAACGTGGGAAGTGGTTTGCTTACATATCCGGTGCTCATGGCG
TCGGATATCTTGCTCTACCGGCCGGACTTGGTCCCTGTTGGAGAAGACCA
GCGGCAGCACCTGGAGCTCACGAGAGATCTGGCACGAAGGTTCGACAGTA
CTTGTGCAGCGTTTAGATGTTTCAAGCACGGCTCGTTGTTCTCTCGGCCA
GAAAGGTGACAACGTGGGAAGTGGTTTGCTTACATATCCGGTGCTCATGG
CGTCGGATATCTTGCTCTACCGGCCGGACTTGGTCCCTGTTGGAGAAGAC
CAGCGGCAGCACCTGGAGCTCACGAGAGATCTGGCACGAAGGTTCGACAG
TACTTGTGCAGCGTTTAGATGTTTCAAGCACGGCTCGTTGTTCTCTCGGC
CAGAAACACCCACGAGCCAAATCTTGTCGTATCTTACAAATTCAACTCGC
ATTATTCGATTTTTACTGCGAAAGGCGCTGATTGTCAAGGAGGGTGCCCG
TGTGATGTCTCTCACCGACGGCACGTCCAAGATGAGCAAGTCGGACCCCG
TGGAGGGTAGCCGCATCAACCTCACCGATTCGCCGGATGTCATCTCCAAA
AAGCACCCACGAGCCAAATCTTGTCGTATCTTACAAATTCAACTCGCATT
ATTCGATTTTTACTGCGAAAGGCGCTGATTGTCAAGGAGGGTGCCCGTGT
GATGTCTCTCACCGACGGCACGTCCAAGATGAGCAAGTCGGACCCCGTGG
AGGGTAGCCGCATCAACCTCACCGATTCGCCGGATGTCATCTCCAAAAAG
CTTCGCAAGTGCAAAACGGATATGTACAAAGGGCTTGAGTGGGACAACCC
CGATCGACCCGAGTGCACTAATCTTCTCACCATCTATCAACTTCGCAAGT
GCAAAACGGATATGTACAAAGGGCTTGAGTGGGACAACCCCGATCGACCC
GAGTGCACTAATCTTCTCACCATCTATCAAGCCGTGACTGGGAAAACCCG
CGAAGAGGTCTCCCTAGAAGTACAAGACATGAGCTGGGGCACTTTCAAGC
CCCTTTTGGCGGATGCAACAGTGGAGCACCTTGCCGTGACTGGGAAAACC
CGCGAAGAGGTCTCCCTAGAAGTACAAGACATGAGCTGGGGCACTTTCAA
GCCCCTTTTGGCGGATGCAACAGTGGAGCACCTTAGACCTCTACAATCTC
GGTACAAGGATATTCTTGAGGATCGCTCTTACCTCAACAAGAGACCTCTA
CAATCTCGGTACAAGGATATTCTTGAGGATCGCTCTTACCTCAACAAGGT
GCTACGAGATGGCGCGGAAGCCGCGGACACGGTGGCATCAGAAACGTTAG
GATGGGCAAAGGATGCCATGGGTATTTCTTCGCTCAAGGACTTCCAATAG
GTGCTACGAGATGGCGCGGAAGCCGCGGACACGGTGGCATCAGAAACGTT
AGGATGGGCAAAGGATGCCATGGGTATTTCTTCGCTCAAGGACTTCCAAT
AG
back to top