mRNA_P-fluviatile_contig20.4388.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4388.1
Unique NamemRNA_P-fluviatile_contig20.4388.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:2127437..2127881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815893.00506-UTR-P-fluviatile_contig20:2127436..21275121622815893.00506-UTR-P-fluviatile_contig20:2127436..2127512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2127437..2127512 +
1693563665.4001186-UTR-P-fluviatile_contig20:2127436..21275121693563665.4001186-UTR-P-fluviatile_contig20:2127436..2127512Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 2127437..2127512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815893.0149999-CDS-P-fluviatile_contig20:2127512..21278811622815893.0149999-CDS-P-fluviatile_contig20:2127512..2127881Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2127513..2127881 +
1693563665.4138496-CDS-P-fluviatile_contig20:2127512..21278811693563665.4138496-CDS-P-fluviatile_contig20:2127512..2127881Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 2127513..2127881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4388.1prot_P-fluviatile_contig20.4388.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 2127513..2127881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4388.1

>prot_P-fluviatile_contig20.4388.1 ID=prot_P-fluviatile_contig20.4388.1|Name=mRNA_P-fluviatile_contig20.4388.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=123bp
MNSRTTQRFPLRANNVRCIAGKGTPVHTSSTHLNISQKKTGELCTFASTL
NHTRKRGICVAPSRRRGETTPAVPRATTGEKGTAFMRRHYSVLMKKGKMC
ARRQDTQTLRPLEVVESVTIVVP
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mRNA from alignment at P-fluviatile_contig20:2127437..2127881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4388.1 ID=mRNA_P-fluviatile_contig20.4388.1|Name=mRNA_P-fluviatile_contig20.4388.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=445bp|location=Sequence derived from alignment at P-fluviatile_contig20:2127437..2127881+ (Porterinema fluviatile SAG_2381)
ACCGCCAGCACCATACCAAAGGACATGCGTGCCCCAACTTTGCGTGCGTG
CCCATTCGCAAGAACAATGAAGCGCAATGAATAGTCGAACGACACAACGG
TTCCCACTAAGGGCAAACAACGTGCGATGTATCGCCGGAAAAGGTACACC
CGTTCACACAAGCAGCACACATCTGAACATTTCGCAAAAGAAGACTGGTG
AACTATGCACCTTCGCGTCGACGTTGAACCACACACGAAAAAGAGGGATA
TGTGTAGCACCGTCTCGAAGAAGAGGGGAGACAACACCTGCTGTCCCAAG
AGCCACGACCGGTGAAAAAGGCACAGCGTTTATGCGACGACACTATTCGG
TATTGATGAAAAAAGGTAAAATGTGCGCCCGAAGGCAGGACACGCAGACC
TTGAGGCCATTGGAGGTCGTCGAGTCCGTGACGATCGTGGTGCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:2127437..2127881+

>mRNA_P-fluviatile_contig20.4388.1 ID=mRNA_P-fluviatile_contig20.4388.1|Name=mRNA_P-fluviatile_contig20.4388.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig20:2127437..2127881+ (Porterinema fluviatile SAG_2381)
ATGAATAGTCGAACGACACAACGGTTCCCACTAAGGGCAAACAACGTGCG
ATGTATCGCCGGAAAAGGTACACCCGTTCACACAAGCAGCACACATCTGA
ACATTTCGCAAAAGAAGACTGGTGAACTATGCACCTTCGCGTCGACGTTG
AACCACACACGAAAAAGAGGGATATGTGTAGCACCGTCTCGAAGAAGAGG
GGAGACAACACCTGCTGTCCCAAGAGCCACGACCGGTGAAAAAGGCACAG
CGTTTATGCGACGACACTATTCGGTATTGATGAAAAAAGGTAAAATGTGC
GCCCGAAGGCAGGACACGCAGACCTTGAGGCCATTGGAGGTCGTCGAGTC
CGTGACGATCGTGGTGCCCATGAATAGTCGAACGACACAACGGTTCCCAC
TAAGGGCAAACAACGTGCGATGTATCGCCGGAAAAGGTACACCCGTTCAC
ACAAGCAGCACACATCTGAACATTTCGCAAAAGAAGACTGGTGAACTATG
CACCTTCGCGTCGACGTTGAACCACACACGAAAAAGAGGGATATGTGTAG
CACCGTCTCGAAGAAGAGGGGAGACAACACCTGCTGTCCCAAGAGCCACG
ACCGGTGAAAAAGGCACAGCGTTTATGCGACGACACTATTCGGTATTGAT
GAAAAAAGGTAAAATGTGCGCCCGAAGGCAGGACACGCAGACCTTGAGGC
CATTGGAGGTCGTCGAGTCCGTGACGATCGTGGTGCCC
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