mRNA_P-fluviatile_contig20.4368.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4368.1
Unique NamemRNA_P-fluviatile_contig20.4368.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig20.4368.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.870e-16
Identity = 58/137 (42.34%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:  376 EVDTYMVPNGIQVRTAWVTTAIDYLSSTEPPSTXXXXXXXXXXPAESTRPDDQPQQVLKISWGDAGSSGVAECHQSRHVGEGEQNPGPGTIPITWLRQHCTSPTARELRRRYGGLAAARASPRPRPVLWCADVFSPG 786
            +VDT+ VPN +QVR A V +          PS+             ST   D+   VL++SWGD     +    Q    G+   N    TIPI WLR+HCTS TAR+LRRR+GG A       PRPVLW ADVFS G
Sbjct:   24 QVDTFQVPNNLQVRNASVAS----------PSSPDDARGGDG----STATTDRQAHVLRVSWGD-----IPAGPQDTRDGKEGPNTNTSTIPIDWLRRHCTSATARDLRRRHGGPADGPGL-HPRPVLWGADVFSAG 140
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BLAST of mRNA_P-fluviatile_contig20.4368.1 vs. uniprot
Match: A0A6H5JP06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP06_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.610e-15
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  184 EPRNSWDRFLRGGAAGVAHVRVVRQQEGT-EKVQLSWEDGHESEFSAKWLRDHCTEAFNLHTKQREV 381
            E +++W RF+ GG  G++   VV+   G  ++V +SW DGH+SEFS KWLRDH  +AFN HTKQR+V
Sbjct:   33 EAQDAWRRFVEGGRHGISAAVVVQPGGGVGQRVSVSWVDGHKSEFSTKWLRDHAADAFNSHTKQRQV 99
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BLAST of mRNA_P-fluviatile_contig20.4368.1 vs. uniprot
Match: D7FLG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG6_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.770e-15
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  184 EPRNSWDRFLRGGAAGVAHVRVVRQQEGT-EKVQLSWEDGHESEFSAKWLRDHCTEAFNLHTKQRE 378
            E +++W RF+ GG  G++   VV+   G  ++V +SW DGH+SEFS KWLRDH  +AFN HTKQR+
Sbjct:   33 EAQDAWRRFVEGGRHGISAAVVVQPGGGVGQRVGVSWADGHKSEFSTKWLRDHAADAFNSHTKQRQ 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNM9_9PHAE5.870e-1642.34TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP06_9PHAE1.610e-1552.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLG6_ECTSI8.770e-1551.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1745463..1747174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size820
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815910.8840458-CDS-P-fluviatile_contig20:1745462..17459031622815910.8840458-CDS-P-fluviatile_contig20:1745462..1745903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1745463..1745903 -
1693563701.9861054-CDS-P-fluviatile_contig20:1745462..17459031693563701.9861054-CDS-P-fluviatile_contig20:1745462..1745903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1745463..1745903 -
1622815910.895029-CDS-P-fluviatile_contig20:1746796..17471741622815910.895029-CDS-P-fluviatile_contig20:1746796..1747174Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1746797..1747174 -
1693563701.993853-CDS-P-fluviatile_contig20:1746796..17471741693563701.993853-CDS-P-fluviatile_contig20:1746796..1747174Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1746797..1747174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4368.1prot_P-fluviatile_contig20.4368.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1745463..1747174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4368.1

>prot_P-fluviatile_contig20.4368.1 ID=prot_P-fluviatile_contig20.4368.1|Name=mRNA_P-fluviatile_contig20.4368.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=273bp
DRSESEETLNPRKQANTGRHMKTLVTLCRFSVSIVAPCRRTRIPGIRSVA
TWPSRDDVHPAEPRNSWDRFLRGGAAGVAHVRVVRQQEGTEKVQLSWEDG
HESEFSAKWLRDHCTEAFNLHTKQREVDTYMVPNGIQVRTAWVTTAIDYL
SSTEPPSTSTAAAAAAAAPAESTRPDDQPQQVLKISWGDAGSSGVAECHQ
SRHVGEGEQNPGPGTIPITWLRQHCTSPTARELRRRYGGLAAARASPRPR
PVLWCADVFSPGAAAAACLHHDE
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mRNA from alignment at P-fluviatile_contig20:1745463..1747174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4368.1 ID=mRNA_P-fluviatile_contig20.4368.1|Name=mRNA_P-fluviatile_contig20.4368.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1712bp|location=Sequence derived from alignment at P-fluviatile_contig20:1745463..1747174- (Porterinema fluviatile SAG_2381)
GACAGATCAGAGAGCGAGGAAACCCTGAATCCACGCAAACAGGCAAACAC
GGGACGACACATGAAGACGCTCGTCACGTTGTGTAGATTTTCGGTCTCAA
TCGTCGCGCCATGTCGGCGAACGCGTATCCCCGGAATCCGCTCGGTTGCC
ACATGGCCATCGCGTGACGATGTACACCCAGCCGAGCCCCGAAACAGCTG
GGATCGGTTTCTCCGGGGCGGCGCGGCCGGAGTGGCGCACGTGCGCGTCG
TACGGCAGCAGGAGGGCACGGAAAAAGTGCAGCTGTCGTGGGAAGATGGC
CACGAGAGCGAGTTCTCGGCGAAATGGTTACGAGATCACTGCACCGAGGC
CTTCAACCTTCACACGAAGCAGCGGGAGGTGAGCGAGAGAGAGTTGTCAG
ATGAAAACAATGTGTACATCAACATAATTGTGTCATAGTGTGTTGCCTGC
CATCCTTTAGCGCCGCTGGATCTTTTCGCACGCTTCTTTCACTGCGAGGC
ACGCAGGATCGATGGTGCTCGTCTGTGCATCAACGGCTGTGTCCGGAATT
TACCGCACGTCCATTTCGCGCTCTGAAATCTCCGAGCTTGAGTCTGGTTC
TATTTCCCTGGAACGCGGCTTCACACGAAGAGTACATGCACCAAAGAATC
GAATGTCTCACAACTGACTGTGGGTCTTTACTCAAGCCTCTTCGCCTGAA
AAGCGCGCAAGAGGCTCGTCGATGCAGGTGGTCGCGCGTGTCTTGAACTC
ATTAAACACATCAATCTTTCAAAGGTGTGTCTTCTGCGTGGCCGCCAGAG
AGCCACCAGCTGGCAAGTTTAGGTTATTTGACGGCAGCTTCGTTCTAGCT
ATGTGAACGGCTCAGCTGGAAGCAGAAACCCGGTGAATATCTTCTCTCTC
TTCCGTAATCCGCACCTTGTGTAGCTCGCACATGCGACATGCACGTATAC
ATGTTGTTGTTGTGCAAAAAGAGCATCGACGTCCACGGTTGCACGCGGTG
TTTGGCGTCCTGTGGTCTCACCCGAACTGGTCTCCCCCATTATCCCTTGT
TTTAAAGATGGAGCCCGATCGCATCCACTCTAATTTTCTGAATTTCAGGA
TCCAACCGTGGTTATTTCTGCTCGGCCCACCCGACTGGAAAGGCTCTTTC
ACAGACTTTCTTGATGTGTTCGCACGTTCAGGAAATCGTGCTTCAAAAAG
TACTGGTATTTCGTCATGACGTCACGCGATAAACGTAATATTTTGGTTGC
TCCCGGATTATCTCTCCACAGGTGGACACCTACATGGTGCCGAATGGCAT
TCAAGTTCGGACAGCTTGGGTGACAACAGCCATTGACTACCTCTCATCCA
CGGAACCCCCATCTACCAGCACTGCTGCAGCGGCTGCTGCTGCTGCTCCG
GCCGAAAGCACCAGGCCCGACGATCAGCCGCAGCAAGTCCTCAAGATTTC
CTGGGGCGACGCTGGCAGCAGCGGGGTCGCCGAATGTCATCAGAGCCGAC
ATGTAGGAGAAGGAGAACAAAACCCTGGCCCCGGCACCATCCCGATCACC
TGGCTCCGACAACACTGCACCTCGCCGACGGCCCGAGAACTCCGGCGGCG
GTACGGGGGCCTCGCCGCCGCCCGCGCGAGCCCCCGCCCCCGGCCGGTCT
TGTGGTGCGCCGATGTCTTCTCCCCCGGCGCCGCCGCCGCGGCCTGCCTG
CACCACGACGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:1745463..1747174-

>mRNA_P-fluviatile_contig20.4368.1 ID=mRNA_P-fluviatile_contig20.4368.1|Name=mRNA_P-fluviatile_contig20.4368.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1638bp|location=Sequence derived from alignment at P-fluviatile_contig20:1745463..1747174- (Porterinema fluviatile SAG_2381)
GACAGATCAGAGAGCGAGGAAACCCTGAATCCACGCAAACAGGCAAACAC
GGGACGACACATGAAGACGCTCGTCACGTTGTGTAGATTTTCGGTCTCAA
TCGTCGCGCCATGTCGGCGAACGCGTATCCCCGGAATCCGCTCGGTTGCC
ACATGGCCATCGCGTGACGATGTACACCCAGCCGAGCCCCGAAACAGCTG
GGATCGGTTTCTCCGGGGCGGCGCGGCCGGAGTGGCGCACGTGCGCGTCG
TACGGCAGCAGGAGGGCACGGAAAAAGTGCAGCTGTCGTGGGAAGATGGC
CACGAGAGCGAGTTCTCGGCGAAATGGTTACGAGATCACTGCACCGAGGC
CTTCAACCTTCACACGAAGCAGCGGGAGGACAGATCAGAGAGCGAGGAAA
CCCTGAATCCACGCAAACAGGCAAACACGGGACGACACATGAAGACGCTC
GTCACGTTGTGTAGATTTTCGGTCTCAATCGTCGCGCCATGTCGGCGAAC
GCGTATCCCCGGAATCCGCTCGGTTGCCACATGGCCATCGCGTGACGATG
TACACCCAGCCGAGCCCCGAAACAGCTGGGATCGGTTTCTCCGGGGCGGC
GCGGCCGGAGTGGCGCACGTGCGCGTCGTACGGCAGCAGGAGGGCACGGA
AAAAGTGCAGCTGTCGTGGGAAGATGGCCACGAGAGCGAGTTCTCGGCGA
AATGGTTACGAGATCACTGCACCGAGGCCTTCAACCTTCACACGAAGCAG
CGGGAGGTGGACACCTACATGGTGCCGAATGGCATTCAAGTTCGGACAGC
TTGGGTGACAACAGCCATTGACTACCTCTCATCCACGGAACCCCCATCTA
CCAGCACTGCTGCAGCGGCTGCTGCTGCTGCTCCGGCCGAAAGCACCAGG
CCCGACGATCAGCCGCAGCAAGTCCTCAAGATTTCCTGGGGCGACGCTGG
CAGCAGCGGGGTCGCCGAATGTCATCAGAGCCGACATGTAGGAGAAGGAG
AACAAAACCCTGGCCCCGGCACCATCCCGATCACCTGGCTCCGACAACAC
TGCACCTCGCCGACGGCCCGAGAACTCCGGCGGCGGTACGGGGGCCTCGC
CGCCGCCCGCGCGAGCCCCCGCCCCCGGCCGGTCTTGTGGTGCGCCGATG
TCTTCTCCCCCGGCGCCGCCGCCGCGGCCTGCCTGCACCACGACGAAGTG
GACACCTACATGGTGCCGAATGGCATTCAAGTTCGGACAGCTTGGGTGAC
AACAGCCATTGACTACCTCTCATCCACGGAACCCCCATCTACCAGCACTG
CTGCAGCGGCTGCTGCTGCTGCTCCGGCCGAAAGCACCAGGCCCGACGAT
CAGCCGCAGCAAGTCCTCAAGATTTCCTGGGGCGACGCTGGCAGCAGCGG
GGTCGCCGAATGTCATCAGAGCCGACATGTAGGAGAAGGAGAACAAAACC
CTGGCCCCGGCACCATCCCGATCACCTGGCTCCGACAACACTGCACCTCG
CCGACGGCCCGAGAACTCCGGCGGCGGTACGGGGGCCTCGCCGCCGCCCG
CGCGAGCCCCCGCCCCCGGCCGGTCTTGTGGTGCGCCGATGTCTTCTCCC
CCGGCGCCGCCGCCGCGGCCTGCCTGCACCACGACGAA
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