mRNA_P-fluviatile_contig20.4367.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4367.1
Unique NamemRNA_P-fluviatile_contig20.4367.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: D7FLG7_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG7_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 4.180e-146
Identity = 201/243 (82.72%), Postives = 221/243 (90.95%), Query Frame = 2 
Query:   65 SARLVDLLLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKGKRRMVGCYLGMDELHSAARVQ 793
            S RLVDL+ S G+ALVRGVPT+E  TE LALR+GGHLRSTLYGPGMWATSAE  AGEE FRDSAYSN  LALHTDCGYLADPPGIQVFNCVVRA+EGG S Y+DGFAVA+RLR  +PEAF+FF+RT +SYQCFD+GCHYMAEGPVFRLG L EVVQVR+NDYDRAPLDYL N+DIDRFYE+H SLS I+RDPSLVARI+LEPG+CVILDNHR LHGRESFKG+RRMVGCYLGMDELHS+ARVQ
Sbjct:   29 SPRLVDLIRSHGVALVRGVPTDEKGTEALALRIGGHLRSTLYGPGMWATSAEASAGEEGFRDSAYSNDGLALHTDCGYLADPPGIQVFNCVVRAQEGGASIYVDGFAVADRLRATNPEAFEFFSRTSISYQCFDEGCHYMAEGPVFRLGPLGEVVQVRYNDYDRAPLDYLPNEDIDRFYEYHASLSEIIRDPSLVARIVLEPGECVILDNHRALHGRESFKGRRRMVGCYLGMDELHSSARVQ 271
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 5.160e-144
Identity = 204/243 (83.95%), Postives = 221/243 (90.95%), Query Frame = 2 
Query:   65 SARLVDLLLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKGKRRMVGCYLGMDELHSAARVQ 793
            S RLVDL+ S G+ALVRGVPT+E  TE LALRVGGHLRSTLYGPGMWATSAE  AGEE FRDSAYSN  LALHTDCGYLADPPGIQVFNCVVRA EGG S Y+DGFAVAERLR  SPEAF+FF+RT +SYQCFD+GCHYMAEGPVFRLGAL EVVQVR+NDYDRAPLDYLSN+DIDRFYE+H SLS I+RDPSLVARI+LEPG+CVIL+NHR LHGRESFKG+RRMVGCYLGMDEL S+ARVQ
Sbjct:  187 SPRLVDLIRSHGVALVRGVPTDEKGTEALALRVGGHLRSTLYGPGMWATSAEASAGEEGFRDSAYSNDGLALHTDCGYLADPPGIQVFNCVVRAREGGASIYVDGFAVAERLRATSPEAFEFFSRTSISYQCFDEGCHYMAEGPVFRLGALGEVVQVRYNDYDRAPLDYLSNEDIDRFYEYHASLSKIIRDPSLVARIVLEPGECVILNNHRALHGRESFKGRRRMVGCYLGMDELESSARVQ 429
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A835ZFJ6_9STRA (TauD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ6_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.560e-89
Identity = 141/238 (59.24%), Postives = 170/238 (71.43%), Query Frame = 2 
Query:   83 LLLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKGKRRMVGCYLGMDELHSAARVQG 796
            +L + GI LV G PT    TE LA R+G  +R TLYG GMWATSAE    EEA  D+AY+N AL  HTDC Y+ DPPG+QVFNCV  A +GG STY+DGFAVA  LR++ PEAF+FFARTP  Y C D   H +A GPVF LG   +VVQVRHNDYDRAPLD+L   DI+ FY+HH  L+ ++R  S + ++ L PGD VI DNHRT+HGRE+F G+RRMVGCY+  D+  S ARV G
Sbjct:    3 MLRAYGIVLVTGSPTTMEGTEALATRIGV-VRETLYG-GMWATSAE--GAEEAHNDTAYTNLALGAHTDCTYMIDPPGLQVFNCVAAAPKGGTSTYVDGFAVAAALREQDPEAFEFFARTPFKYFCHDKYHHLLAAGPVFTLGCGGQVVQVRHNDYDRAPLDHLPYGDIEAFYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARVCG 236
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A2D4BN78_PYTIN (Trimethyllysine dioxygenase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN78_PYTIN)

HSP 1 Score: 220 bits (561), Expect = 1.010e-63
Identity = 105/232 (45.26%), Postives = 152/232 (65.52%), Query Frame = 2 
Query:   98 GIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARV 790
            GI +V   P++   TE+ + ++G  +  T+YG  MW T+ + +  ++ + D+A SN  L  HTD  Y+ DPPG+Q+FNC+V+A EGG+S Y+D + V E+LR++ P AFDF ++TPL YQ FDD  H     P+ +L     VVQ RHNDYDRAPL +LS D +D FY HH  L  I+RDP++  R  L+ G+ +I+DNHR +H R++F G +R ++GCY+G  E  S  RV
Sbjct:  198 GIVMVHSTPSSMDETEKFSRKIG-FVMETIYGK-MWTTNPQTK--DQQYNDTASSNIELLHHTDGTYIRDPPGLQIFNCIVQAGEGGDSRYVDAYHVVEKLRRQFPAAFDFLSKTPLHYQTFDDDAHLTTMEPIIKLDHAGNVVQFRHNDYDRAPLTHLSFDQVDEFYRHHAELLKIIRDPAMEFRHKLQVGEMIIVDNHRVMHARDAFVGGERALIGCYIGRTEYESRLRV 425
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: K3WYB6_GLOUD (Trimethyllysine dioxygenase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYB6_GLOUD)

HSP 1 Score: 213 bits (543), Expect = 3.720e-61
Identity = 104/238 (43.70%), Postives = 152/238 (63.87%), Query Frame = 2 
Query:   86 LLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARVQG 796
            L   G+ ++   P++   TE  + ++G  LR T+YG  MW T+ + E  ++ + D+A +N  L  HTD  Y+ DPPG+Q+FNCV +A EGGES YID F V E+LR ++P A+ F + TPL+Y  FD+  H     P+ R+   D VVQ RHNDYDRAPL +LS DD+ RFYE+H+ L  ++RDP++   + L  G+ +++DN R +HGR +F G  R ++G Y+G +E  S  RV G
Sbjct:  186 LYKYGLVMISNTPSSMDETEAFSRKIGFVLR-TIYGE-MWTTNPQTE--DQEYNDTASTNMELLHHTDGTYMRDPPGLQIFNCVAQAGEGGESRYIDAFHVVEKLRAQNPVAYKFLSTTPLNYHHFDNDAHMATMEPIIRVDHADNVVQFRHNDYDRAPLTHLSFDDVQRFYEYHRELMTLMRDPTMETTVKLRVGEMIVVDNQRVMHGRNAFDGGDRALIGSYIGRNEYDSRLRVLG 419
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A5D6XF28_9STRA (Trimethyllysine dioxygenase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF28_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.860e-60
Identity = 112/244 (45.90%), Postives = 155/244 (63.52%), Query Frame = 2 
Query:   68 ARLVDLLLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARVQG 796
            A L+  L   G+ +V   P++ A TER + R+G  LR T+YG  MW T+   ++ E+ + D+A +N  L  HTD  Y+ DPPG+Q+FNCV +A EGGES Y+D F  AERLR + P AF F A TP++Y  FD   H  A  PV +L     VVQVR+NDYDRAPL +L    +++FY HH++L  ++RD SL A + L  G+ V++DN R LHGR +F G +R ++G Y+G +E  S  RV G
Sbjct:  190 APLMTDLYKYGLVMVTATPSSMAETERFSRRIGFVLR-TIYGE-MWTTN--PQSAEQEYNDTASTNLELLPHTDGTYMRDPPGLQIFNCVAQAGEGGESRYVDAFHAAERLRAQDPAAFRFLAATPVNYHHFDADAHLAAMEPVIKLDHAGHVVQVRYNDYDRAPLTHLPFAAVEQFYRHHRALVRVLRDASLEATLKLRVGEMVVVDNQRVLHGRAAFDGGERSLIGSYIGRNEYDSRLRVLG 429
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A8K1C7S5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7S5_PYTOL)

HSP 1 Score: 210 bits (534), Expect = 5.950e-60
Identity = 101/236 (42.80%), Postives = 153/236 (64.83%), Query Frame = 2 
Query:   86 LLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARV 790
            L   G+ +V   P++   TE+ + ++G  L  T+YG  MW T+ + E  E+ + D+A +N  L  HTD  Y+ DPPG+Q+FNC+ +A EGG+S Y+D F VAERLR+++P AF+FF +TPL Y  +D   H     P+ +L     +VQ RHNDYDRAPL +LS ++ + FY++H  L +++RDPS+  R+ L+ G  +I+DN R +H R++F G +R ++GCY+G  E  S  RV
Sbjct:  175 LYKYGLVMVHATPSSMDETEKFSRKIGFVLE-TIYGT-MWTTNPQTE--EQEYNDTASTNIELLHHTDGTYMRDPPGLQIFNCIAQAGEGGDSRYVDAFHVAERLRRQNPAAFEFFTKTPLHYHHYDRDAHLATMEPIIQLDHAGNIVQFRHNDYDRAPLTHLSFEETELFYKYHGELLSLLRDPSMEFRVKLQVGQMIIVDNQRVMHARDAFSGGERALIGCYIGRTEYESRLRV 406
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A3R7J7L5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J7L5_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.440e-55
Identity = 104/238 (43.70%), Postives = 146/238 (61.34%), Query Frame = 2 
Query:   86 LLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARVQG 796
            L + G+  V G P    +TE+ + ++G  LR T+YG  MW T+   +   E + D+A +N  L  HTD  Y+ DPPG+Q+FNC+ +A EGGES YID F V E LR+E+PEAF   ++TPL Y   D   H     P+ R+     VVQ RHNDYDRAPL +LS +++D FY+ H+ L  ++R P +     L+ GD +I+DN R +HGR +F G +R ++GCY+G  E  S  RV G
Sbjct:  186 LYTYGLVRVTGTPKTMDATEKFSTKIGFVLR-TIYGT-MWTTNPTND--NEDYNDTASTNLELLHHTDGTYILDPPGLQIFNCIAQAGEGGESRYIDSFHVVETLRKENPEAFRVLSQTPLPYFTVDRDAHLSTMEPLIRVDYAGNVVQFRHNDYDRAPLTHLSFEEVDAFYKAHRKLLEVMRRPEMEFCTKLQVGDMMIVDNQRVMHGRHAFNGGERALIGCYIGRTEYESRLRVLG 419
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: D0N1N0_PHYIT (Trimethyllysine dioxygenase n=12 Tax=Phytophthora TaxID=4783 RepID=D0N1N0_PHYIT)

HSP 1 Score: 199 bits (505), Expect = 2.010e-55
Identity = 103/238 (43.28%), Postives = 147/238 (61.76%), Query Frame = 2 
Query:   86 LLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARVQG 796
            L + G+  V G PT+  +TE+ + ++G  LR T+YG  MW T+   +A  E + D+A +N  L  HTD  Y+ DPPG+Q+FNC  +A EGGES Y+D F V E LR+E+PEAF   + T L Y   D+  H     P+ R+     VVQ RHNDYDRAPL +LS +++  FY+ H+ L  ++R P +   + L+ GD V++DN R +HGR +F+G  R ++GCY+G  E  S  RV G
Sbjct:  200 LYTNGLVRVSGTPTSMEATEKFSKKIGFVLR-TIYGT-MWTTNPTNDA--EDYNDTASTNLELLHHTDGTYIRDPPGLQIFNCAAQAGEGGESRYVDAFHVVETLRKENPEAFRVLSTTSLPYFTVDNDAHLATMEPLIRVDYAGNVVQFRHNDYDRAPLTHLSFEEVGEFYQAHRKLLEVLRRPEMEFCMKLQVGDMVVVDNQRVMHGRHAFQGGDRALIGCYIGRTEYESRLRVLG 433
[Close]
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Match: A0A6A3MDB6_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDB6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.200e-55
Identity = 104/238 (43.70%), Postives = 144/238 (60.50%), Query Frame = 2 
Query:   86 LLSRGIALVRGVPTNEASTERLALRVGGHLRSTLYGPGMWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAEEGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPVFRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLVARILLEPGDCVILDNHRTLHGRESFKG-KRRMVGCYLGMDELHSAARVQG 796
            L S G+  V G P    +TE+ + ++G  LR T+YG  MW T+   EA  E + D+A +N  L  HTD  Y+ DPPG+Q+FNC  +A EGGES Y+D F VAE LR E PEAF   + T L Y   D+  H     P+ R+     +VQ RHNDYDRAPL +LS +++  FY+ H+ L  ++R P +   + L+ GD V++DN R +HGR +F+G  R ++GCY+G  E  S  RV G
Sbjct:  250 LYSYGLVRVSGTPNTMEATEKFSKKIGFVLR-TIYGT-MWTTNPTNEA--EGYNDTASTNLELLHHTDGTYIRDPPGLQIFNCAAQAGEGGESRYVDSFHVAETLRSEDPEAFRVLSTTSLPYFTLDNDAHLATMEPLIRVDYAGNIVQFRHNDYDRAPLTHLSFEEVGEFYKAHRKLLEVMRRPEMEFCMKLDVGDMVVVDNQRVMHGRHAFQGGDRALIGCYIGQTEYESRLRVLG 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG7_ECTSI4.180e-14682.72TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNM9_9PHAE5.160e-14483.95TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZFJ6_9STRA2.560e-8959.24TauD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2D4BN78_PYTIN1.010e-6345.26Trimethyllysine dioxygenase n=2 Tax=Pythium insidi... [more]
K3WYB6_GLOUD3.720e-6143.70Trimethyllysine dioxygenase n=1 Tax=Globisporangiu... [more]
A0A5D6XF28_9STRA1.860e-6045.90Trimethyllysine dioxygenase n=1 Tax=Pythium brassi... [more]
A0A8K1C7S5_PYTOL5.950e-6042.80Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7J7L5_9STRA1.440e-5543.70Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0N1N0_PHYIT2.010e-5543.28Trimethyllysine dioxygenase n=12 Tax=Phytophthora ... [more]
A0A6A3MDB6_9STRA3.200e-5543.70Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1740100..1745418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score358.2
Seed ortholog evalue2.5e-96
Seed eggNOG ortholog2880.D7FLG7
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
EggNOG free text desc.trimethyllysine dioxygenase activity
EggNOG OGsCOG2175@1,KOG3889@2759
EC1.14.11.8
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTaurine catabolism dioxygenase TauD/TfdA
Ec32 orthologEc-17_001250.1
Exons5
Model size1304
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815910.7694297-UTR-P-fluviatile_contig20:1740099..17406011622815910.7694297-UTR-P-fluviatile_contig20:1740099..1740601Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1740100..1740601 -
1693563701.927364-UTR-P-fluviatile_contig20:1740099..17406011693563701.927364-UTR-P-fluviatile_contig20:1740099..1740601Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1740100..1740601 -
1622815910.8520565-UTR-P-fluviatile_contig20:1745219..17454181622815910.8520565-UTR-P-fluviatile_contig20:1745219..1745418Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1745220..1745418 -
1693563701.9782207-UTR-P-fluviatile_contig20:1745219..17454181693563701.9782207-UTR-P-fluviatile_contig20:1745219..1745418Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1745220..1745418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815910.7805033-CDS-P-fluviatile_contig20:1740601..17406761622815910.7805033-CDS-P-fluviatile_contig20:1740601..1740676Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1740602..1740676 -
1693563701.9377465-CDS-P-fluviatile_contig20:1740601..17406761693563701.9377465-CDS-P-fluviatile_contig20:1740601..1740676Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1740602..1740676 -
1622815910.7924592-CDS-P-fluviatile_contig20:1741426..17415201622815910.7924592-CDS-P-fluviatile_contig20:1741426..1741520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1741427..1741520 -
1693563701.9457078-CDS-P-fluviatile_contig20:1741426..17415201693563701.9457078-CDS-P-fluviatile_contig20:1741426..1741520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1741427..1741520 -
1622815910.8041408-CDS-P-fluviatile_contig20:1742273..17423741622815910.8041408-CDS-P-fluviatile_contig20:1742273..1742374Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1742274..1742374 -
1693563701.9543226-CDS-P-fluviatile_contig20:1742273..17423741693563701.9543226-CDS-P-fluviatile_contig20:1742273..1742374Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1742274..1742374 -
1622815910.8165047-CDS-P-fluviatile_contig20:1743528..17437381622815910.8165047-CDS-P-fluviatile_contig20:1743528..1743738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1743529..1743738 -
1693563701.962093-CDS-P-fluviatile_contig20:1743528..17437381693563701.962093-CDS-P-fluviatile_contig20:1743528..1743738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1743529..1743738 -
1622815910.8347378-CDS-P-fluviatile_contig20:1745096..17452191622815910.8347378-CDS-P-fluviatile_contig20:1745096..1745219Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1745097..1745219 -
1693563701.9700696-CDS-P-fluviatile_contig20:1745096..17452191693563701.9700696-CDS-P-fluviatile_contig20:1745096..1745219Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1745097..1745219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4367.1prot_P-fluviatile_contig20.4367.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1740602..1745219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4367.1

>prot_P-fluviatile_contig20.4367.1 ID=prot_P-fluviatile_contig20.4367.1|Name=mRNA_P-fluviatile_contig20.4367.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=201bp
MWATSAEVEAGEEAFRDSAYSNGALALHTDCGYLADPPGIQVFNCVVRAE
EGGESTYIDGFAVAERLRQESPEAFDFFARTPLSYQCFDDGCHYMAEGPV
FRLGALDEVVQVRHNDYDRAPLDYLSNDDIDRFYEHHKSLSAIVRDPSLV
ARILLEPGDCVILDNHRTLHGRESFKGKRRMVGCYLGMDELHSAARVQGA
*
back to top

mRNA from alignment at P-fluviatile_contig20:1740100..1745418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4367.1 ID=mRNA_P-fluviatile_contig20.4367.1|Name=mRNA_P-fluviatile_contig20.4367.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5319bp|location=Sequence derived from alignment at P-fluviatile_contig20:1740100..1745418- (Porterinema fluviatile SAG_2381)
GCCGCACGCGCAGCAGGAAGGAGGGGGTCGGGGTGACGGCACCAGCGGCG
GCGGTGGCGGCGGCAGCGCGCGTCTCGTCGATCTCCTCCTGTCGCGTGGC
ATAGCGCTCGTGCGCGGCGTACCCACCAATGAGGCCAGCACCGAGCGCCT
CGCCCTCCGGGTGGGCGGGCACCTGCGGAGCACCCTCTACGGCCCCGGAA
TGTGGGCCACCTCGGCGGAGGTGGAGGCCGGCGAGGAGGCGTTCCGGGAC
AGCGCGTACTCCAACGGCGCCCTTGCGCTGCACACGGATTGCGGGTACCT
CGCCGACCCGCCAGGAATTCAGGTGGGTGGAGGGGGGGGGGGGGGGGGAG
AGGGCGTGGTTGCCGCGATGAAGAAGAAGCGGCGGAGAGGGTGGGGTTGC
TGACGGTGGTAAAGGACGTTTTCATCACCATTATACCAAATTGATATTGC
ACCTCTGCGACGCCTCCGGACAAGGAGAGGCACCTCCGTCGGGTCTCTGT
CTTTGGGGGGTTGAAAGAGGAGGGGGTGTTCTTAGCCGTGCATGCCGTAG
TCGTTGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCCG
GGTTCGCACCGGACCAGGCTCTCACACCACCAAGCGCGAAGCGCCATGAG
GTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTGTTC
GGCATCTTGTGCTTACTTCCTTGCAAACGGACGACAGCTGCGTATGGCTT
AATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTGT
AACTGCCTCGAGGGTGCTTGACCATTTCAACACAACGTGGTGCGATCTTC
CCTCTTGCGCGGAGTGAGGGTTCTCCACCCCGCACAACATGATCTTCTCG
ACCACCATTGTGGTTACCGCCAAAAACAACAGAGTGAAAAAAAAGACGGT
AACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTACAACGTCGT
TGCCAAGCGACGAAAACCCAACCCCGATGGCAAATACCGAGGTGAGAGCC
AGTGGGAGGGGGGGGAGCGACGAAAACCCAGGGAGGGGGGGCATATACAT
TCCCTTGAAAGAAGCGAGGGACTGCGCTCGCCGATTGCCGTAGCGATTTC
GCGGTCGTGGTTGTATCGTGAGCGCACTCGATTCCTTTCTTCCGCTTTTC
GTGCTGTGTCTAAATGTTTGAGGTTGGGAGTTATGCTGGTCACCAGTGTC
AGTGGAAACATGCGATTGGGCGTGTGTGATGCCACGGGTGGATAGGCGGG
CGGTGGGCGGCGGGGTGCAACAAGGAGGGAGGAATTAGGTCAACGACGTA
AGGAGAGGAAACCGGAAGGTCAAGTGTTCACCGTGGCGGAGTGTAGCGTT
CTCCCTGACCAGCTGGTGTCAAGAGCTTGACTCCTGCAACCAGACCGAGG
GGCTTACGACTGGGCTGAAGATGACCGTGGATTTCATACAATTACGGTTC
GTTTTCAATTGGCGCCCTCGGCGGGGGCTTCGGGGGCGAAGAAAGACGGA
CCGTATGCAGCTGCTCGTTGGCCGTCCTCTCGCACGATCGCGTGTCGCCT
ACCTCTCACACGCTGTCTTTCCCTCGCCACCTCCCTTCTCCCTTCTGCCT
CGGCCTCTTGTCCCCGTCCTGCTGTTGTAGGTATTCAATTGCGTTGTCCG
GGCGGAAGAGGGAGGGGAGAGCACCTACATCGACGGCTTCGCGGTGGCCG
AGCGCCTCAGACAGGAGAGCCCGGAGGCGTTCGACTTCTTCGCGCGGACC
CCCCTCTCCTACCAGTGCTTCGACGACGGCTGCCACTACATGGCGGAGGG
GCCCGTGTTTCGGCTAGGTGCGCTTGACGAAGTCGTCCAGGTGCGAACCT
TGGAAGAAGCAATCTTCTCTGGGACAACTATGTGTTGCCATTCCAACAGG
CTTGTGCTTTCGGGCAGTCGTCTGCTTCCATGCCAGCGGTGCTTGTGGAC
CCTGCGAACCGTAGGTTGCATGAGATGTCACACTTCCTGGGTCGGCGTTT
GAAGTTCAGCATCTCGACTGCGAGGGTTGGACCAAAATCAGTCGACGTGC
AAATCAATATCTCTCTACGAGATGTTTTTGCAGTTAGCCTTGTATTCCGT
GAGGACATCAATCTTCGATTACCCGCGCAGAGGGTGTGGTATTGTAGGAA
ACGTAGGGCACTCGCGTGGCTCTTGACCGTTTCCAAGTAGTGAGGGCTCT
CTCTCTGATGCGGGGGTGGGACGGGAGTTTCTTCCCGCACTACAGCGGGC
AGCCGCACTATTCAGAAGTGGATAAATTCATATCTGGATTTTGGTGTGAA
AGAGAGCTTTCATGCTTTCACCCGCTCAACATCGGGGACCTGCACGTTTA
AGCCCGCACTCTACGGGGGGGGGGGACTGTGGTGTCCGTCCGCCAAAGAT
TTCCTTGCGTTTCTTGCCTATTCACGAGTTTCTGCCCAGTGTGGATTCCT
ATCAAACAGCCCCCTGTTTGCTTCCCGCACGAGCCCGTTTGGTAATACAG
TGAATGTTTCCCCCTTGATTGGTTCGGATTGCCTACACAGGAATAGTAAG
ATTCAACAGGAACACAGCAGTGGAGGGTTACGTGATATCGAACGCTAACC
CTGTTGCCAACCCTTACCGTTACCCCTACTAATTGTTTCAGAAGTTCGTG
TTTCCACCCATGTTGAGGCTATGCTACTAAACTTTCGGGAATCCTCAGCG
TATCGATATGTTTCAGCAGGCGGTTTTTGAACCTCGCGGAAAATGCACGT
TATTTTCTGTGGCCTTGAACGCCCCTCCATTGGGTTCTGTGGGTAAGTTT
TGTGGCCTACCGCGCGTAGGTGGTGAGCCGGAGAGCACACGCGCCACTTC
TCGGGCGTTTTGGTGAGATGCTTGTCCGCACTCAACACCCTCATGGAACC
CCCAGGTTGCATGCGACTAGTTTGCTTGCTCATTCCGTCTTGTTTGCCCA
TGCGTTGACCTTTCCTACTCCACTCGTGGATGCTTGTCATGAAGGTGAGA
CACAACGACTACGACCGCGCCCCGCTGGACTACCTATCGAACGACGACAT
CGACCGCTTCTATGAGCACCACAAATCTCTGTCAGCCATCGTCAGGTGTG
AATGCGAAAATGGATCTGACTCTGCCTTCTTCCAGAGAAGAGAAGGCCTT
CTTCCAGAGAAGAGAAGGGTAGCTAAGGGAGCGTGCACAGCCGACTACCT
GCGAGCGCGAAAAAGTCTTTCTGATTATCAATGCAAGAAAAAAGCCACGG
AATTTTACAAAACCGTTTACCTTGTTGCAAATGTTATGAGCGGAAAGTTG
CGTTTACAGCACGCAATTCTACTTCTAGCTTTCAAGATGATGTGTGGCCA
TTTGGAACAAAAGAAAAATGTGCTCGGGGTGACTGTATAACCGCGCACTC
GCCGGTCGGGGATGTAGGGACGAAAGCATGCTGTCGTTGAACATGTACTC
GCATATTTACAGAGGAGCCGGACCTTGCGTACATCAACAGCCGGGGCGTC
ACCTCGGTTCTACCGCGCCGTCAAAACGTGTTCATTTTTCCATTGTATAG
TTTCGTGCCGCATCGTTTATCCCGTCGCCGTATCGGTCTGCCGGAGCACT
CTGTCATTAAGGGATCTGTCTTGATTTTTTCATCTGGTCCTTTGTCGTAC
CGTGCTCTCCTCTTCGTTGAATTTCACACCCATGTATCGTACATCATCCC
ATCGGTTTGGCGGCACGCTCCTTCATTCAGGGGTCTGTCTTCTTTCTTTC
ACCACTTCCGCTCACCCCGTGCTTCCCTCGTTAGATGGCAAACCACAGCT
GTACCGTACATCATCCCAAGCGATTTGCCTGCACACTCCTCCTGTCAGAG
ATCCGTCGCTGGTGGCGCGGATTCTCCTCGAGCCCGGAGATTGCGTCATC
CTGGACAACCACCGGACGCTGCACGGCAGGGAATCCTTCAAGGTGAGCGC
TTCGTGCCAGAGCGGCGGCGTTCTGTGCCAAACCGCTTTAGACGCATCGC
GTTCTTGGAAGCCGATGCGCTCCGTCACAGGTGTGCGCGATTTCGGTAAA
GTTGTGCGGGTTGGTGATAATCATGTTTCGGCTGGCTAAAAAAAAATGAA
AAAGAAAAAGGAAATCATGATTAAGACCAAGCTTGTTACTGAAAAAAAAA
GCTTTTTGCTCCTTGCTCATGCACTTCGTCAACGTGTCTCATTTTACTCT
CCGCTCTTAAAAAGGTAGTGCACGATTTGCGGTTTTCCAATTTCGGTGCA
TGCTTCACCGGTTTAACGTCACTTCTTTGAGACGCTCGTTCTGCATGGTG
CTTGTTGTATCTGCCGGAGTCGTCCACGACAGCTGTTGGTTGGTAGGGAC
TCCTGGTTTGGTGCTGGCGGTGGTGGCGGTGTTGACACAAGTGCATGCCC
TTGGTCGGGAGCAAAAATCAACTACACTCACAGTCCCGGCCCCAATACGC
TTTCAAGAAAAATCATCTGGTTTGTTGGGTGGGGGCCTTCGCAAGCTCCT
CGGATTTATCATCGCGGCGGATACCCAGCAGGTAGGGGTTGTTCGCCGTC
GCCGCAGCGGTCTAGAGTGCAACGATTGGCCGTCTCGGCGGCCGTTTCGC
CGCAGAAATGTTCCTTCTCGTGTTGCATTCCCGAAGCGAACTCAAAATCC
AAGCGACCCCTTCCCCCCCCCCGACCCCTCCCTATGAAACAGGGGAAAAG
ACGAATGGTCGGGTGTTATCTGGGCATGGACGAGCTTCACTCCGCGGCCC
GCGTACAGGGAGCGTAGACCACGGCTGTCTCGGGGTTGGCTGCTTCGCGT
GCGCTTATCGTTCGTTCTCTTGTGCCGCTATTTTCGTCATTTCAGCGGCT
CTTGCACTCGTTCTGGCGTAGTGTGAAGAGCGAGTCCTCGCGTACACTGA
GGGGAGATAGTGCTGAACTCTTCTCCCTTCAGGAATCAGAGGCATTCTTT
ACACCGCAGGAGGGCGGGCGGCAGCTTCAGGCAGAGGAAACTTTCTGTGC
AACAACGGAGCTCTGGCGGGGCACGCCCCTGACAGCGATGGTTGGATGTG
AAGAGGCGGTTCTGTGCATGTATTTATCATCTGAGGTCGGAAGGCGTCAC
GGCATGGCTGCAAGGAGAGGGGGCACAAGACAAATGTGTGAATGCGAAAG
CATCTTCTCAAGCTTTACGTGGGCGGAGGCAGCGTGTTCCGATGGTATTA
CCCTTAAGCCCCGTCACACAACAACGTGAACTCTCGCGTGATCAGCTGCC
AGACTGGGCCGGCTTGGCA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:1740100..1745418-

>mRNA_P-fluviatile_contig20.4367.1 ID=mRNA_P-fluviatile_contig20.4367.1|Name=mRNA_P-fluviatile_contig20.4367.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1206bp|location=Sequence derived from alignment at P-fluviatile_contig20:1740100..1745418- (Porterinema fluviatile SAG_2381)
ATGTGGGCCACCTCGGCGGAGGTGGAGGCCGGCGAGGAGGCGTTCCGGGA
CAGCGCGTACTCCAACGGCGCCCTTGCGCTGCACACGGATTGCGGGTACC
TCGCCGACCCGCCAGGAATTCAGATGTGGGCCACCTCGGCGGAGGTGGAG
GCCGGCGAGGAGGCGTTCCGGGACAGCGCGTACTCCAACGGCGCCCTTGC
GCTGCACACGGATTGCGGGTACCTCGCCGACCCGCCAGGAATTCAGGTAT
TCAATTGCGTTGTCCGGGCGGAAGAGGGAGGGGAGAGCACCTACATCGAC
GGCTTCGCGGTGGCCGAGCGCCTCAGACAGGAGAGCCCGGAGGCGTTCGA
CTTCTTCGCGCGGACCCCCCTCTCCTACCAGTGCTTCGACGACGGCTGCC
ACTACATGGCGGAGGGGCCCGTGTTTCGGCTAGGTGCGCTTGACGAAGTC
GTCCAGGTATTCAATTGCGTTGTCCGGGCGGAAGAGGGAGGGGAGAGCAC
CTACATCGACGGCTTCGCGGTGGCCGAGCGCCTCAGACAGGAGAGCCCGG
AGGCGTTCGACTTCTTCGCGCGGACCCCCCTCTCCTACCAGTGCTTCGAC
GACGGCTGCCACTACATGGCGGAGGGGCCCGTGTTTCGGCTAGGTGCGCT
TGACGAAGTCGTCCAGGTGAGACACAACGACTACGACCGCGCCCCGCTGG
ACTACCTATCGAACGACGACATCGACCGCTTCTATGAGCACCACAAATCT
CTGTCAGCCATCGTCAGGTGAGACACAACGACTACGACCGCGCCCCGCTG
GACTACCTATCGAACGACGACATCGACCGCTTCTATGAGCACCACAAATC
TCTGTCAGCCATCGTCAGAGATCCGTCGCTGGTGGCGCGGATTCTCCTCG
AGCCCGGAGATTGCGTCATCCTGGACAACCACCGGACGCTGCACGGCAGG
GAATCCTTCAAGAGATCCGTCGCTGGTGGCGCGGATTCTCCTCGAGCCCG
GAGATTGCGTCATCCTGGACAACCACCGGACGCTGCACGGCAGGGAATCC
TTCAAGGGGAAAAGACGAATGGTCGGGTGTTATCTGGGCATGGACGAGCT
TCACTCCGCGGCCCGCGTACAGGGAGCGTAGGGGAAAAGACGAATGGTCG
GGTGTTATCTGGGCATGGACGAGCTTCACTCCGCGGCCCGCGTACAGGGA
GCGTAG
back to top