mRNA_P-fluviatile_contig20.4360.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4360.1
Unique NamemRNA_P-fluviatile_contig20.4360.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5L9J1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J1_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 3.220e-86
Identity = 139/250 (55.60%), Postives = 183/250 (73.20%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R +   +++ FA+S    GH AHPGTS+  I EL+Q+EKI+VP W++ F++ R++   LR+F +AF+AW ENE L  ++ G+ VPVG   + L WL+  YG  RV+QSRK WTFML++IT    Q QILA ESPQAGY +FL+ YSQ+KS +RQ +DD WN+  Q+Q E + DY+GRA ALWMRLR++GDNRDE+SMC+HI RGFL  FE  KD +LF  +LSRA MQE LR+ EHEL  ERR G+RKE+
Sbjct:   21 RELGHLLKQAFATSTQDQGHRAHPGTSNNQILELRQREKIDVPVWSDDFLKSRSIEVALRVFTSAFEAWLENEGLAGVMRGSEVPVGATGMDLNWLRSTYGEERVKQSRKIWTFMLAKITAQPAQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKTKDRLLFDTMLSRATMQEMLRMEEHELRYERRDGERKEE 270
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5JD49_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD49_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 8.420e-80
Identity = 135/250 (54.00%), Postives = 180/250 (72.00%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R + D  ++ FA+S H  GH AH GTS   I EL+Q+EKI+VP W++ +++ R++   LR+F +AF+AW E+E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA ESPQAGY +FL+ YSQ+KS +RQ +DD WN+  Q+Q E + DY+GRA ALWMRLR++GDNRDE+SMC+HI RGFL  FE  KD +LF  +LSRA MQE LR+ EHEL  ERR+ + KE+
Sbjct:   57 RELVDLFKQAFATSTHDQGHRAHSGTSSNQILELRQREKIDVPVWSDDYLKNRSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKTKDRLLFDSMLSRATMQEMLRLEEHELRYERRAAEGKEE 306
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5KCW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW8_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.120e-76
Identity = 132/240 (55.00%), Postives = 175/240 (72.92%), Query Frame = 3 
Query:  207 FASSEH-QGGHAHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            FA+S H QG HAH GTS+  I EL+Q+EKI+VP W++ +++ R++   LR+F +AF+AW E+E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA ESPQAGY +FL+ YSQ+KS +RQ +DD WN+  Q+Q E + DY+GRA ALWMRLR++ DNRDE+ MC+HI RGFL  FE  KD +L   +LSRA MQE LR+ EHEL  ERR+G+ KE+
Sbjct:    8 FATSTHVQGHHAHSGTSNNQILELRQREKIDVPVWSDDYLKSRSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYDDNRDEKLMCRHIVRGFLRRFEKTKDRLLCDSILSRATMQEMLRLEEHELRYERRAGEGKEE 247
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 5.370e-76
Identity = 135/250 (54.00%), Postives = 179/250 (71.60%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R + D  ++ FA+S H  GH AH G+S+  I EL+Q+EKI VP W++ +++  ++   LR+F +AF+AW E+E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA E PQAGY +FL+ YSQ KSH+RQ +DD WNL  Q+Q E + DY+GRA ALWMRLR++GDNRDE+SMCKHI RGFL  F+  KD +LF  +LSRA MQE LR+ EHEL  ERR+G+ KE+
Sbjct:   57 RELVDLFKQAFATSTHDQGHRAHSGSSNNQILELRQREKINVPVWSDEYLKNTSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASEPPQAGYRVFLEQYSQEKSHERQTLDDAWNLIGQRQGESLKDYYGRAVALWMRLRSYGDNRDEKSMCKHIVRGFLPRFDKTKDRLLFDSMLSRATMQEMLRLEEHELRYERRAGEGKEE 306
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.910e-72
Identity = 132/250 (52.80%), Postives = 175/250 (70.00%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R + D  +  FA+S H  GH AH GTS+  I EL+Q+EKI VP W++ +++ R++   LR+F + F+AW  +E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA ESPQAGY +FL+  SQ+KS +RQ +DD WN+  Q+Q E + DY+GRA  LWMRLR++GDNRDE SMC+HI RGFL  FE  KD +LF  +LSRA MQE LR+ EHEL  ERR+G+ KE+
Sbjct:  131 RELVDLFKRTFATSTHDQGHRAHSGTSNNQILELRQREKIHVPVWSDDYLKNRSIQVALRVFTSVFEAWLGSEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQDSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVGLWMRLRSYGDNRDETSMCRHIVRGFLPRFEKTKDRLLFDSILSRATMQEMLRLEEHELRYERRAGEGKEE 380
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5JC40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC40_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.730e-71
Identity = 130/250 (52.00%), Postives = 178/250 (71.20%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R + D  ++ FA+S H  GH AH GTS   I EL Q+EKI+VP W++ +++ R++   L++F +A +AW E+E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA ESP+AG  +FL+ YSQ+KS +RQ +D  W++  Q+Q E + DY+GRA ALWMRLR++GDNRDE+SMC+HI RGFL  FE  KD +LF+ +LSRA MQE LR+ EHEL  ERR+G+ KE+
Sbjct:  608 RELVDLFKQAFATSTHDQGHRAHSGTSSNQILELMQREKIDVPVWSDNYLKNRSIEVALQVFTSALEAWLESEGLAGVMRSSGVPVGAAGVDLSWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPRAGCRVFLEQYSQDKSQERQTLDAAWDVIGQRQGESIMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKTKDRLLFNSMLSRATMQEMLRLEEHELRYERRAGEGKEE 857
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 3.630e-68
Identity = 125/250 (50.00%), Postives = 172/250 (68.80%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            R + D  ++ FA S H  GH AH GTS   I EL+Q+E I+VP W++ +++ R++   LR+F +AF+AW E+E L  ++  + VPVG   V L WL   +G  R +QSRK WTFML++IT   +Q QILA ESPQAGY +FL+ YSQ+K  +RQ +DD WN   Q+Q E   DY+GRA ALW+RLR++GD  DE+SMC+HI RGF+  F+  KD +LF  +LS+A +QE LR+ +HEL  ERR G+ KE+
Sbjct:   57 RELVDLFKQAFAISSHDQGHRAHSGTSSNQILELRQRETIDVPAWSDDYLKNRSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERAKQSRKIWTFMLAKITAQRVQAQILASESPQAGYRVFLEQYSQDKIQERQTLDDAWNAIGQRQGESPMDYYGRAVALWLRLRSYGDKWDEKSMCRHIVRGFIPTFDKTKDRLLFDSMLSKATIQEMLRLEKHELRYERRHGEGKEE 306
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5JY94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY94_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 2.530e-67
Identity = 120/224 (53.57%), Postives = 161/224 (71.88%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTSHIPI-ELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSR 842
            R + D  ++ FA S H  GH AH GTS   I EL+Q+EKI+VP W++ +++ R++   LR+F +AF+AW E+E L  ++  + VPVG   V L WL   +G  RV+QSRK WTFML++IT   +Q QILA ESPQAGY +FL+ YSQ+KS +RQ +DD WN+  Q+Q E + DY+GRA ALWMRLR++GDNRDE+SMC+HI RGFL  FE +KD +LF  +LSR
Sbjct:  102 RELVDLFKQAFAISTHDQGHRAHSGTSSNEILELRQREKIDVPAWSDDYLKNRSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLNWLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQAESLMDYYGRAVALWMRLRSYGDNRDEKSMCRHIVRGFLPRFEKSKDRLLFDSMLSR 325
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.600e-56
Identity = 101/172 (58.72%), Postives = 127/172 (73.84%), Query Frame = 3 
Query:  405 LMGNAVPVGRENVKLMWLKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHYSQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEESMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSGDRKED 920
            + G+ VPVG   + L WL+  YG  RV+Q RK WTFML++IT   +Q QILA ESPQAGY +F+  YSQ+KS +RQ +DD WN+  Q+Q E + DY+GRA ALWMRLR++GD RDE+SMC+HI RGFL  FE  KD +LF  +LSRA MQE LR+ EHEL  ERR G+RKE+
Sbjct:    1 MRGSEVPVGATGMDLNWLRSTYGEERVKQPRKIWTFMLAKITAQPVQAQILAAESPQAGYRVFIDQYSQDKSQERQNLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDYRDEKSMCRHIVRGFLPRFEKTKDRLLFDTMLSRATMQEMLRMEEHELRYERRDGERKEE 172
[Close]
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Match: A0A6H5L5G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-10
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 3 
Query:  177 RIVADAVREGFASSEHQGGH-AHPGTS-HIPIELKQKEKIEVPEWNERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGN 416
            R + D +++ FA+S    GH AHPGTS +  +EL+QKEKI+VP W++ F++ R++   LR+F +AF+AW ENE L  ++ G+
Sbjct:  167 RELVDLLKQAFATSTQDQGHRAHPGTSSNQTLELRQKEKIDVPAWSDDFLKSRSIEVALRVFTSAFEAWLENEGLAGVMRGS 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L9J1_9PHAE3.220e-8655.60Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JD49_9PHAE8.420e-8054.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KCW8_9PHAE1.120e-7655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN8_9PHAE5.370e-7654.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JXD4_9PHAE2.910e-7252.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC40_9PHAE1.730e-7152.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Y0_9PHAE3.630e-6850.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JY94_9PHAE2.530e-6753.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQJ6_9PHAE1.600e-5658.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5G5_9PHAE1.400e-1045.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1656667..1657872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1206
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4360.1prot_P-fluviatile_contig20.4360.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1656672..1657667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.8258257-UTR-P-fluviatile_contig20:1656666..16566711622815892.8258257-UTR-P-fluviatile_contig20:1656666..1656671Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1656667..1656671 +
1693563665.3165126-UTR-P-fluviatile_contig20:1656666..16566711693563665.3165126-UTR-P-fluviatile_contig20:1656666..1656671Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1656667..1656671 +
1622815892.8563533-UTR-P-fluviatile_contig20:1657667..16578721622815892.8563533-UTR-P-fluviatile_contig20:1657667..1657872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1657668..1657872 +
1693563665.3396308-UTR-P-fluviatile_contig20:1657667..16578721693563665.3396308-UTR-P-fluviatile_contig20:1657667..1657872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1657668..1657872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.8427744-CDS-P-fluviatile_contig20:1656671..16576671622815892.8427744-CDS-P-fluviatile_contig20:1656671..1657667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1656672..1657667 +
1693563665.3251743-CDS-P-fluviatile_contig20:1656671..16576671693563665.3251743-CDS-P-fluviatile_contig20:1656671..1657667Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1656672..1657667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4360.1

>prot_P-fluviatile_contig20.4360.1 ID=prot_P-fluviatile_contig20.4360.1|Name=mRNA_P-fluviatile_contig20.4360.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=332bp
MHDYEYTPPPSPARSRTSGGGEGAAAGGRDYCFGGGTQQQQDGDGRPGTA
TGLEALGRIVADAVREGFASSEHQGGHAHPGTSHIPIELKQKEKIEVPEW
NERFVQKRTVPQELRIFKTAFDAWKENEELTEMLMGNAVPVGRENVKLMW
LKDNYGGLRVEQSRKFWTFMLSRITVDSIQQQILAFESPQAGYHLFLQHY
SQNKSHQRQQVDDEWNLFRQKQEERMTDYFGRASALWMRLRTHGDNRDEE
SMCKHIARGFLAEFEMAKDLILFHPVLSRAKMQETLRVAEHELEVERRSG
DRKEDGARPRCGRRGWERRGEEICTWRIWER*
back to top

mRNA from alignment at P-fluviatile_contig20:1656667..1657872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4360.1 ID=mRNA_P-fluviatile_contig20.4360.1|Name=mRNA_P-fluviatile_contig20.4360.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1206bp|location=Sequence derived from alignment at P-fluviatile_contig20:1656667..1657872+ (Porterinema fluviatile SAG_2381)
ACGGCATGCACGACTATGAGTACACCCCCCCCCCGTCGCCAGCAAGGTCA
AGGACCTCTGGCGGCGGGGAAGGTGCCGCGGCCGGAGGAAGAGACTACTG
CTTCGGCGGCGGTACGCAACAGCAGCAGGATGGAGATGGGAGACCGGGAA
CAGCAACGGGGCTGGAGGCCTTGGGACGGATCGTCGCCGATGCTGTCCGT
GAGGGCTTCGCCTCTTCCGAGCACCAGGGGGGCCATGCCCATCCAGGCAC
GTCTCATATCCCTATAGAACTCAAGCAGAAAGAGAAAATCGAAGTCCCAG
AATGGAATGAACGGTTCGTCCAAAAGCGTACTGTTCCACAAGAGTTGCGG
ATTTTCAAGACTGCGTTCGACGCCTGGAAAGAAAATGAAGAACTGACTGA
GATGTTGATGGGAAATGCGGTTCCTGTGGGCAGGGAGAATGTGAAATTGA
TGTGGCTGAAGGACAACTACGGAGGGTTGAGAGTAGAGCAGTCTAGGAAG
TTTTGGACCTTCATGCTTTCGAGAATCACGGTTGACTCTATCCAGCAGCA
AATTCTTGCATTTGAATCGCCGCAAGCAGGATACCATTTGTTCCTCCAGC
ACTACAGTCAAAACAAGAGTCATCAACGTCAGCAGGTTGATGACGAATGG
AATTTGTTCAGACAGAAGCAGGAGGAGAGGATGACTGACTACTTCGGTAG
AGCGAGTGCGTTGTGGATGAGATTGAGGACGCACGGTGACAACAGGGACG
AGGAATCGATGTGTAAACATATTGCGCGTGGCTTTCTTGCGGAATTTGAA
ATGGCCAAGGACCTGATTCTCTTTCACCCTGTGTTGTCGAGGGCAAAAAT
GCAGGAGACGCTGAGGGTCGCCGAGCACGAGTTGGAGGTGGAGCGGAGAT
CTGGAGACAGGAAGGAGGACGGGGCACGCCCTCGTTGCGGCCGGCGCGGG
TGGGAGCGGCGGGGCGAGGAGATCTGCACCTGGCGGATATGGGAGCGGTA
GTCAGCAGAAGCAGCAGCAGCAGCAGCAGCCGAACCAACAGCAAGAGCCG
CCGCCTTTCCGCTGCGGGTACCACGGTCCGAACTATAGCCACGACTCCTC
CAACTGCCACAAGCTGCGCGATGAGTTCATCCAGAACTGGCCAGCGTTCC
TCAGCTTCATGCACGGGAGCAGGGGAACTCAAGGGTCCGCCCCTCGGGGC
GGGGCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:1656667..1657872+

>mRNA_P-fluviatile_contig20.4360.1 ID=mRNA_P-fluviatile_contig20.4360.1|Name=mRNA_P-fluviatile_contig20.4360.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1992bp|location=Sequence derived from alignment at P-fluviatile_contig20:1656667..1657872+ (Porterinema fluviatile SAG_2381)
ATGCACGACTATGAGTACACCCCCCCCCCGTCGCCAGCAAGGTCAAGGAC
CTCTGGCGGCGGGGAAGGTGCCGCGGCCGGAGGAAGAGACTACTGCTTCG
GCGGCGGTACGCAACAGCAGCAGGATGGAGATGGGAGACCGGGAACAGCA
ACGGGGCTGGAGGCCTTGGGACGGATCGTCGCCGATGCTGTCCGTGAGGG
CTTCGCCTCTTCCGAGCACCAGGGGGGCCATGCCCATCCAGGCACGTCTC
ATATCCCTATAGAACTCAAGCAGAAAGAGAAAATCGAAGTCCCAGAATGG
AATGAACGGTTCGTCCAAAAGCGTACTGTTCCACAAGAGTTGCGGATTTT
CAAGACTGCGTTCGACGCCTGGAAAGAAAATGAAGAACTGACTGAGATGT
TGATGGGAAATGCGGTTCCTGTGGGCAGGGAGAATGTGAAATTGATGTGG
CTGAAGGACAACTACGGAGGGTTGAGAGTAGAGCAGTCTAGGAAGTTTTG
GACCTTCATGCTTTCGAGAATCACGGTTGACTCTATCCAGCAGCAAATTC
TTGCATTTGAATCGCCGCAAGCAGGATACCATTTGTTCCTCCAGCACTAC
AGTCAAAACAAGAGTCATCAACGTCAGCAGGTTGATGACGAATGGAATTT
GTTCAGACAGAAGCAGGAGGAGAGGATGACTGACTACTTCGGTAGAGCGA
GTGCGTTGTGGATGAGATTGAGGACGCACGGTGACAACAGGGACGAGGAA
TCGATGTGTAAACATATTGCGCGTGGCTTTCTTGCGGAATTTGAAATGGC
CAAGGACCTGATTCTCTTTCACCCTGTGTTGTCGAGGGCAAAAATGCAGG
AGACGCTGAGGGTCGCCGAGCACGAGTTGGAGGTGGAGCGGAGATCTGGA
GACAGGAAGGAGGACGGGGCACGCCCTCGTTGCGGCCGGCGCGGGTGGGA
GCGGCGGGGCGAGGAGATCTGCACCTGGCGGATATGGGAGCGGTAGATGC
ACGACTATGAGTACACCCCCCCCCCGTCGCCAGCAAGGTCAAGGACCTCT
GGCGGCGGGGAAGGTGCCGCGGCCGGAGGAAGAGACTACTGCTTCGGCGG
CGGTACGCAACAGCAGCAGGATGGAGATGGGAGACCGGGAACAGCAACGG
GGCTGGAGGCCTTGGGACGGATCGTCGCCGATGCTGTCCGTGAGGGCTTC
GCCTCTTCCGAGCACCAGGGGGGCCATGCCCATCCAGGCACGTCTCATAT
CCCTATAGAACTCAAGCAGAAAGAGAAAATCGAAGTCCCAGAATGGAATG
AACGGTTCGTCCAAAAGCGTACTGTTCCACAAGAGTTGCGGATTTTCAAG
ACTGCGTTCGACGCCTGGAAAGAAAATGAAGAACTGACTGAGATGTTGAT
GGGAAATGCGGTTCCTGTGGGCAGGGAGAATGTGAAATTGATGTGGCTGA
AGGACAACTACGGAGGGTTGAGAGTAGAGCAGTCTAGGAAGTTTTGGACC
TTCATGCTTTCGAGAATCACGGTTGACTCTATCCAGCAGCAAATTCTTGC
ATTTGAATCGCCGCAAGCAGGATACCATTTGTTCCTCCAGCACTACAGTC
AAAACAAGAGTCATCAACGTCAGCAGGTTGATGACGAATGGAATTTGTTC
AGACAGAAGCAGGAGGAGAGGATGACTGACTACTTCGGTAGAGCGAGTGC
GTTGTGGATGAGATTGAGGACGCACGGTGACAACAGGGACGAGGAATCGA
TGTGTAAACATATTGCGCGTGGCTTTCTTGCGGAATTTGAAATGGCCAAG
GACCTGATTCTCTTTCACCCTGTGTTGTCGAGGGCAAAAATGCAGGAGAC
GCTGAGGGTCGCCGAGCACGAGTTGGAGGTGGAGCGGAGATCTGGAGACA
GGAAGGAGGACGGGGCACGCCCTCGTTGCGGCCGGCGCGGGTGGGAGCGG
CGGGGCGAGGAGATCTGCACCTGGCGGATATGGGAGCGGTAG
back to top