mRNA_P-fluviatile_contig20.4355.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4355.1
Unique NamemRNA_P-fluviatile_contig20.4355.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Match: D7FLH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH4_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.060e-33
Identity = 126/323 (39.01%), Postives = 163/323 (50.46%), Query Frame = 2 
Query:   23 GGGRGDNTGTTRRGDVRASSENTSAAHDWFAATRHGRDDAIAVGGAGFSPNGGAPGWEDTYAFKRSKARRAIKTSRILAGKGPRRALSAAPDQQRWNWDWCSGPASALPAHRLENLFSRFDEALSSSPNISPTAASSAAPEGRHRSNLVPAGSTALALTAAGAVPTGRN--------------------ERGD-EVSDSMEAAAAVXXXXXXXXXXXXXXXXXVTTASSRWQRRRRGIGSSRDRASSERGQPDKSPGAGLVRETPAMEQADLIPNVSENEGGKGHLISMEMQRRNRELTKVQQKIIALLVKGNDIARRREARD 928
            GGG G  + T R G         SAA+DWFAATRHGRDDA+  GG   + N G PGWEDTYAF+RS ARRAIKTSRIL+GK      SAA    +WNWDWCS P SALPA R+E L S+FD+ +S             AP G  R    P  +  +++    A P                        E+ D E S S  +  A+                 V  +++   + RRG    R    +E G+ +K      +   P  +   +I N S +  G+ HL+ +E+Q+R++EL K+QQKIIALLVKGND ARRR   D
Sbjct: 1269 GGGVGSGSSTARHGRGGVGGV-ASAANDWFAATRHGRDDAV-PGGTRVALNRG-PGWEDTYAFRRSTARRAIKTSRILSGKKMPLLSSAATLPGKWNWDWCSRPLSALPADRIEYLQSKFDDDMS-------------APFGEARR---PTSAATISIGDGSAAPXXXXXXXXXXXXXXXXXXXXXXXXEKTDAEGSLSPPSPTALADNKGKAASTATGV---VDNSAATAHKARRG----RSERVNEHGRDEKDCDREQLNTEPTRD--GIIRNASGS--GRAHLVPVEVQKRSKELVKLQQKIIALLVKGNDHARRRYRMD 1561
[Close]
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Match: A0A836CMC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC0_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.470e-29
Identity = 93/261 (35.63%), Postives = 131/261 (50.19%), Query Frame = 2 
Query:  971 GPRPGQLGPHYTLQSVMDFRAAFNFVDEDMSGCLDSEEWRRFLDRFNSSVAAINMRSMFLH-----------LDKDMSGTVEVGELVPVVFNKASTPQHGLIRHLIEYEN----------------------------------------TMDVRRFNNKHLP-----------AAQATL--------QLDDAKRLFELYDT----SGSGRLDQKTVRSMLLALRVPQLSWDALVKSAPLLQTAATITSDEFAAGFFEAFV 1531
            G RP QLGPHY++ SVM+FRAAFN VD + SG LD+ EW+RFL R++SSV+ +N R+MFL            LD+DMSGT+E  EL+PVVF +A+  Q  +IR +IEY +                                        TM    + ++  P           AA A +        Q++D ++LF+LY       GS  L ++ VR ++ +L+ P LS+D     AP   +  +IT+DEFA  F  AFV
Sbjct: 2016 GARPAQLGPHYSVSSVMEFRAAFNAVDVNRSGSLDAGEWQRFLARYDSSVSDLNARNMFLXXXXXXXXXXXSLDRDMSGTLECSELIPVVFTRATQKQLHVIRCVIEYSDALXXXXXXXXXXXXXXXXESEAAAEKRRAQPLAAAMANGMTMSATIYQHRRTPSLSDSGASTLAAAAAAVRERQHDRPQVEDLRKLFKLYTAFAGDDGSSTLPKEMVRRLINSLKTPGLSFDMWNHHAP--PSTPSITADEFAEAFLAAFV 2274
[Close]
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Match: A0A7S4DFJ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFJ3_HETAK)

HSP 1 Score: 118 bits (295), Expect = 5.090e-27
Identity = 63/184 (34.24%), Postives = 108/184 (58.70%), Query Frame = 2 
Query:  983 GQLGPHYTLQSVMDFRAAFNFVDEDMSGCLDSEEWRRFLDRFNSSVAAINMRSMFLHLDKDMSGTVEVGELVPVVFNKASTPQHGLIRHLIEYENTMDVRRFNNKHLPAAQATLQLDDAKRLFELYDTSGSGRLDQKTVRSMLLALRVPQLSWDALVKSAPLLQTAATITSDEFAAGFFEAFVM 1534
            G LGPHY+++ V +FR AFN+VDEDMSG L+  EW  FL RF+  ++   +R  FL +DKD SG +++ EL+P++FNKA+  Q  ++  L+++ N+  + + +    P     L ++D +RL+  YDT  +G +  +T++ +   L++  LS   ++  A +   A     D+F     E +V+
Sbjct:    9 GFLGPHYSMERVKEFREAFNYVDEDMSGRLEYAEWEIFLRRFDPKISQDMVRRNFLLIDKDYSGAIDIDELMPIIFNKATPEQCTIMLRLVQHANSKTMNQSSRP--PPDIDILTIEDVERLYAFYDTDKTGAISSETLKMVFDDLKI--LSVLRILLKAKIPSKAQLKPEDKFTCA--ELYVL 186
[Close]
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Match: A0A6H5JHV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.420e-25
Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = 2 
Query:   23 GGGRGDNTGTTRRGDVRASSENT-SAAHDWFAATRHGRDDAIAVGGAGFSPNGGAPGWEDTYAFKRSKARRAIKTSRILAGKGPRRALSAAPDQQ-RWNWDWCSGPASALPAHRLENLFSRFDEALS 397
            GGG G  + T R G  R   E   SAA+DWFAATRHGRDDA+  GG   + + G PGWEDTYAFKRS ARRAIK+SRI++GK     LS+A     +WNWDWCS P SALP  R+E L S+FD+ +S
Sbjct:  954 GGGVGSGSSTARHG--RGGVEGVASAANDWFAATRHGRDDAV-PGGTRVALSRG-PGWEDTYAFKRSTARRAIKSSRIVSGKKNMPLLSSAATLPGKWNWDWCSRPLSALPVDRIEYLLSKFDDEMS 1076
[Close]
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Match: A0A7S3NJ92_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ92_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.400e-10
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 2 
Query:  995 PHYTLQSVMDFRAAFNFVDEDMSGCLDSEEWRRFLDRFNSSVAAINMRSMFLHLDKDMSGTVEVGELVPVVFNKASTPQHGLIRHLIEYEN 1267
            P+YT   +++F  +FN+VD D+SG ++ EEW  F+ R N  V+    + +FLH+D+D  G+V + EL+ +VF +    Q   I + ++  N
Sbjct:  538 PYYTGNDILEFHNSFNYVDVDLSGSINIEEWNIFMMRMNQRVSETESQLLFLHIDRDGDGSVTMRELIAIVFQRCRPDQQQKIYYKLKQLN 628
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLH4_ECTSI2.060e-3339.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMC0_9STRA2.470e-2935.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DFJ3_HETAK5.090e-2734.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JHV9_9PHAE3.420e-2557.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NJ92_9STRA4.400e-1035.16Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1590810..1596108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue5.4e-08
Seed eggNOG ortholog42099.EPrPV00000016591
EggNOG free text desc.protein).. Source PGD
EggNOG OGs1MFF7@121069,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-17_001160.1
Exons8
Model size1740
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4355.1prot_P-fluviatile_contig20.4355.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1591972..1595905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815909.3634276-UTR-P-fluviatile_contig20:1590809..15910741622815909.3634276-UTR-P-fluviatile_contig20:1590809..1591074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1590810..1591074 +
1693563696.847123-UTR-P-fluviatile_contig20:1590809..15910741693563696.847123-UTR-P-fluviatile_contig20:1590809..1591074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1590810..1591074 +
1622815909.3749013-UTR-P-fluviatile_contig20:1591680..15919711622815909.3749013-UTR-P-fluviatile_contig20:1591680..1591971Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1591681..1591971 +
1693563696.859132-UTR-P-fluviatile_contig20:1591680..15919711693563696.859132-UTR-P-fluviatile_contig20:1591680..1591971Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1591681..1591971 +
1622815909.4758294-UTR-P-fluviatile_contig20:1595905..15961081622815909.4758294-UTR-P-fluviatile_contig20:1595905..1596108Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1595906..1596108 +
1693563696.9453485-UTR-P-fluviatile_contig20:1595905..15961081693563696.9453485-UTR-P-fluviatile_contig20:1595905..1596108Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1595906..1596108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815909.3867424-CDS-P-fluviatile_contig20:1591971..15921991622815909.3867424-CDS-P-fluviatile_contig20:1591971..1592199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1591972..1592199 +
1693563696.8677526-CDS-P-fluviatile_contig20:1591971..15921991693563696.8677526-CDS-P-fluviatile_contig20:1591971..1592199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1591972..1592199 +
1622815909.3990443-CDS-P-fluviatile_contig20:1592708..15928391622815909.3990443-CDS-P-fluviatile_contig20:1592708..1592839Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1592709..1592839 +
1693563696.8829405-CDS-P-fluviatile_contig20:1592708..15928391693563696.8829405-CDS-P-fluviatile_contig20:1592708..1592839Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1592709..1592839 +
1622815909.4134848-CDS-P-fluviatile_contig20:1593231..15933471622815909.4134848-CDS-P-fluviatile_contig20:1593231..1593347Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1593232..1593347 +
1693563696.895357-CDS-P-fluviatile_contig20:1593231..15933471693563696.895357-CDS-P-fluviatile_contig20:1593231..1593347Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1593232..1593347 +
1622815909.4250097-CDS-P-fluviatile_contig20:1593772..15939031622815909.4250097-CDS-P-fluviatile_contig20:1593772..1593903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1593773..1593903 +
1693563696.9086251-CDS-P-fluviatile_contig20:1593772..15939031693563696.9086251-CDS-P-fluviatile_contig20:1593772..1593903Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1593773..1593903 +
1622815909.4374113-CDS-P-fluviatile_contig20:1594074..15941851622815909.4374113-CDS-P-fluviatile_contig20:1594074..1594185Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1594075..1594185 +
1693563696.921909-CDS-P-fluviatile_contig20:1594074..15941851693563696.921909-CDS-P-fluviatile_contig20:1594074..1594185Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1594075..1594185 +
1622815909.4521766-CDS-P-fluviatile_contig20:1594735..15948141622815909.4521766-CDS-P-fluviatile_contig20:1594735..1594814Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1594736..1594814 +
1693563696.9293983-CDS-P-fluviatile_contig20:1594735..15948141693563696.9293983-CDS-P-fluviatile_contig20:1594735..1594814Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1594736..1594814 +
1622815909.465669-CDS-P-fluviatile_contig20:1595720..15959051622815909.465669-CDS-P-fluviatile_contig20:1595720..1595905Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1595721..1595905 +
1693563696.9370506-CDS-P-fluviatile_contig20:1595720..15959051693563696.9370506-CDS-P-fluviatile_contig20:1595720..1595905Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1595721..1595905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4355.1

>prot_P-fluviatile_contig20.4355.1 ID=prot_P-fluviatile_contig20.4355.1|Name=mRNA_P-fluviatile_contig20.4355.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=327bp
MEAAAAVATATASRAAGSAAEDGGVTTASSRWQRRRRGIGSSRDRASSER
GQPDKSPGAGLVRETPAMEQADLIPNVSENEGGKGHLISMEMQRRNRELT
KVQQKIIALLVKGNDIARRREARDRQRGTKVTKKPLAKGPRPGQLGPHYT
LQSVMDFRAAFNFVDEDMSGCLDSEEWRRFLDRFNSSVAAINMRSMFLHL
DKDMSGTVEVGELVPVVFNKASTPQHGLIRHLIEYENTMDVRRFNNKHLP
AAQATLQLDDAKRLFELYDTSGSGRLDQKTVRSMLLALRVPQLSWDALVK
SAPLLQTAATITSDEFAAGFFEAFVM*
back to top

mRNA from alignment at P-fluviatile_contig20:1590810..1596108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4355.1 ID=mRNA_P-fluviatile_contig20.4355.1|Name=mRNA_P-fluviatile_contig20.4355.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5299bp|location=Sequence derived from alignment at P-fluviatile_contig20:1590810..1596108+ (Porterinema fluviatile SAG_2381)
GGGCGGTACCGCTGTTGCTGGTGGCGGTGGCCGTGGCGACAACACCGGCA
CCACTCGCAGGGGAGACGTGAGAGCGTCGAGCGAAAACACCAGCGCGGCG
CACGACTGGTTTGCGGCAACGCGGCACGGTCGGGACGACGCGATCGCTGT
AGGGGGGGCCGGATTTTCTCCGAACGGGGGGGCGCCCGGCTGGGAAGACA
CTTACGCGTTCAAGAGGAGCAAGGCGAGGCGGGCTATCAAGACGAGCAGG
ATTCTGGCTGGCAAGGTACGGTAGCAACAACGAGACACGATAAGCTGCAT
CGCAGCTGGAATAGGTAGGGCCCGCGGAGCTGATAGAGGCCCATAGTTTG
CGCAGAGCGATCGGCGTGCTTAACGCCCCGAGAGAAGAGTTATTCTATAC
GAAGATTTTTTATTTGGGATAGAGTACGGTGGGGAGACGATTGGACGGTG
AGAGCACGGCCCTGTTCCGATACTGGGTCCTCCCCACGCCGTAGCTGTGA
ATGTCCCTTGCGGGAGCAACGCATTACGGATCAGTGCCCCAGATATCTTG
CCGCCAGGACAAGCCAATGAGTGGGCGAGCGGAAAGGGTTCTGGCACACG
CACGTGCCACTGTGTACGGGAAAAAGACGCTGTATTTTCTCTTTTTCTTT
TTTCGACGCAAAGGCACGAAGCAGGCACAGCGTAGTCTTTGTCGCTGTTT
CTGCCTCCGTTACCGCCGGACGCTCTCCTCACGCTACAGCGGTCGACGAG
GCTCGCCCGGCGTAAGTCTGGGGAGTTCAAAATCCCCTAAAAACGACCTT
GGAAGAGGACGCTGCAACGTATGACCACACGTTGTTTCCCCTTTGACCCC
GGCGGGGTGATGTACGCGCAGGGCCCTCGCCGGGCATTATCGGCCGCCCC
TGACCAACAAAGGTGGAACTGGGACTGGTGCAGCGGCCCGGCGTCCGCTC
TGCCTGCGCATCGCTTGGAGAACCTCTTCAGCAGGTTCGACGAAGCCCTC
TCCTCCTCTCCAAATATTTCGCCCACCGCTGCTTCTTCCGCTGCCCCCGA
GGGACGGCATCGATCAAATCTCGTTCCTGCGGGTTCCACAGCCTTGGCTT
TGACGGCGGCGGGAGCAGTACCTACGGGCCGGAATGAACGGGGCGACGAG
GTATCAGACTCAATGGAAGCGGCGGCAGCGGTTGCGACGGCAACAGCGTC
GCGGGCTGCCGGGTCTGCTGCGGAAGACGGCGGTGTGACCACGGCGTCGT
CACGGTGGCAGCGCCGACGGCGAGGAATAGGAAGCAGCAGGGATAGAGCG
AGCTCGGAGCGCGGACAGCCGGATAAATCACCGGGGGCAGGGCTAGTCCG
AGAAACGCCAGCGATGGAGCAAGCTGACCTGATTCCGAACGTGCGTTGCT
CCTTTGAGTCGGGAGTGCCGGTCGAACGCCGGTTATCCCGTTGCAAAACT
TTGTCGCCAGTTTGCATGTCGTTCACGTATGATGCAGCCGTTTCGCCGCC
GTGAACAACCCATCGGGGCGATCTAACAGATCTAGACCTTCCGCAAGACA
AGTTATGATTCAAGCGTGACCTGGCACCAGCAGTTTGCACGACACGCGCG
ATAGAGGTGGGGCCTAGGTCTTGGCCGCCCTTGTTCCCTGCCTTCATCCT
CTCGCCCCCTTCGGCACAAGCTAGTGAAAGTTTTTCGACGTACGCCGCCA
TCACATGAATCAAGAACAGGGGCGACATGGAGGTACAGCCGCCCGGCGGC
TGTATCGCACTCTCATCATCCAAGACTTCGCCCCCAAGAGAGCGGAAAAG
TCAACCCTAGTCATGCCTTCCCGGTTGTTTTCATCACTCTCCCTCTCGCC
GTCATTCAAATCGCCTGGGGGGTTCGTTCGCGGATGTTCCGTCGTCAAGG
TATCCGAGAACGAGGGCGGAAAGGGCCACCTCATTTCGATGGAGATGCAG
AGGCGGAACAGGGAGCTGACCAAGGTTCAACAGAAGATCATCGCGCTGCT
CGTGAAGGGGAACGACATCGCGAGACGCAGGTCAGCGGAGATCTTGGAGA
CAAAATAGTGCGTTATATCCGACACAAGTGAGCGATGCGCTTGAAAGCTG
AGGCTCTTGTTTCGATTTCATCGTTCCAATGCCTCGCGTATTCATCCGCT
CATTTCTCAGCCAGGATGCCCACATGCTGTCAAGCTCCGTAAATAGGTAA
TGAGACACGCAGTCGCACGATTTCCTTAGACCGTTTCACGGCGTAACCAC
GGTTTATAACTGCGTGAAAGTATGTGCGTGAAGCAGTCGTGCGATGCACG
GCTGGGTGACCACTCCTGATCTTCCACGGCGAGGTTGACAAACTTGTAGG
GCACTGCCGACAGAAAGGTGAAGACTCCCCGGCTTGCGACACCTTTGTGG
TGTATGCCAATCTCCGAACCAGGGAAGCAAGAGATCGGCAGCGGGGCACC
AAAGTCACCAAGAAGCCCCTTGCCAAGGGCCCTAGGCCGGGACAGTTGGG
ACCTCACTACACGCTTCAGTCAGTTATGGACTTCAGGGGTAAGCGCGATG
AAAAAAAGTTTGCCGTTCGGGTCACATCAGAGCAAGCATGTGCCGCTTGA
TTCCACTTCTGCTCCGGTGTATCGCAACTGCAGATATTCAAGCCGCAAAC
AACGCCAGCCAACGTCCCCGTTGCTTGTGCAGCGGCAGGAGTGAAACGAG
TTTTTGTGGGCCTTCCTTGCTTTGTTTGCTCCATACGCATCTGTATACTC
GTCGTTCATAGCGCTCGAAGTGCTGCCGCCCAATATCTGTATGATATCGT
GGATGTGCATGCTTTCGTCTTCGCACTGCACATGGACATGGAATACATCT
CTCGTTGCCCACCCCCATACTTTCGTTTTTGTGAACATTTCGTCGTCCAT
GGCCGTGGGGGATCTATGCCATCTGCGGATTTCTTCCGGTGTATCATCCA
TGCAAACCGTAAGCGGCATTCAACTTCGTGGACGAGGACATGAGCGGCTG
TCTCGATTCAGAGGAATGGCGGCGCTTTCTGGACCGCTTCAACAGCAGTG
TCGCGGCCATCAACATGCGCAGCATGTTCCTGCACCTCGACAAGGTTCGC
GTGACAAACTTTTTGTTCCCCGCCCACCCAGGTTAGAGATCCGCATCGAA
ACACACAAGGTTGCCTGTAGGATCTCTCTTCGTGATTTCGCTGCCTCGCC
CGTCAATCTTAACCGCCTAACACGCAAATCCACTCATACCCGCACCGTTT
GTTTCGCTACCCCAGGATATGAGCGGCACCGTTGAGGTGGGAGAATTAGT
GCCGGTGGTCTTCAACAAAGCGTCGACGCCCCAACACGGCCTCATTAGGC
ATCTAATCGAATACGAGAACACAATGGTGAGAAAGCAGCAGGCGTGAGCA
CCGCTTGTGTGTTCATGTTATTAGACACCGCGCGAGCGCACATGTCGTCA
CGCAGCAAGGTTTCTTCGAGTGCGCGCATGCTGTACGATTTTGTGCAGCA
TTTCCTTGGATTTGTGAGTTGACGATAACTATCTCTCCGTGTCTTGCCTT
CCGCGTGCATCTAAGTCATGAACTCGCGCCTGCGGGTACGAGCCCCACGA
CGTCAAGCCTGATGGAAAGCAGTGAGAATAACGCCCGCGCGCTCACGTGG
ATTTGACACCAATGTACCAATCCGCGCAGCCCCTCCCAGTATCTCAGCAT
CTATCGTTCCGGACTACGCGACACACCGTGACATGAATTCAAGCCGCTGG
CAGCCATCATTGGTGTGCACCGCGGATATGTCGGCATATTCGGTTTTTCG
GAAACAGACCATCATAAAGCGTGTCCTGATCACCTCGCACGATAAAGCGA
AGGCAAGCACATGATGGAAAAACTACCGTGGACACCTCGCCAGGCTGAAA
TGAAACACGCCTCTTGGCCCGCGCAGGACGTGAGACGCTTCAACAACAAA
CACTTGCCGGCGGCCCAGGCAACGCTGCAGCTGGATGACGCGAAGAGACT
CTTCGGTATGTCGACGGTTGTAATTGACACAAACTTGCAGTCACTGCCGG
CACAACATCACTTTTTTTCCCCGCCTTTGTTACAAAAGAGTTGTTGCGCT
TGGAATACAATTGTCTTCCTCAGTTTTTTGCAGTACAATTTGTGTACTTT
TGTGCTAAAGGACTCTTACCGCCAATTTTGTTTTATAAATGAAATTCCCT
ATGGTCGCAGAAAGCAGAAGAAACGTATGATGTCGGCGGAGGCTGTGCGG
ACGTGGTTGTGTTAGTCCAccccccCCCCCGACTCTCCCCCCTCCCCCGC
TGGCTCTCACCTCGGTGTTTGCCACCGGGATTGGGTTTTCGTCGCTTGGC
AACGACGTTGTAAAACAAGCCAATTCACTTTGTGAACTCGGCAACCAGGT
TACCGTCTTTTTTTCCACTGTTTTTTTTGGCGGTAACCATAACGGTGGTC
GTGAAGGCACCAGAAAATAAATTAAGCCATACGCAGCTGTCATTCGTATG
CAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCAC
CCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGGTGT
GATAGCCTTGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGG
GATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACAATGAGTATC
CCCCCTCCCGACTCACTTCCCCGCTTGGCTCTGAACGTCGTTTGTGAAAT
CGTTGGTGTCGCGCTTTCGTCTTTCCCCATTGTTGTCTCGTTTTCGTGTC
GCGAACATGATGTACGCAGTCTAGCAGAGCGGTTCGCCGCCCTGCCCCTT
CCTCCCTCCGCCCCGGTCTTGTCCTGTGCATAACCTTGTGCCGTCCATAC
ATTCTTGGCAGAGTTGTACGACACGTCCGGGTCGGGGCGGCTGGATCAAA
AGACCGTCAGGAGCATGCTGCTGGCGCTGAGGGTTCCACAGCTATCGTGG
GACGCTCTGGTGAAGAGCGCGCCCCTGCTGCAGACGGCTGCGACCATCAC
GTCGGATGAGTTCGCCGCTGGTTTCTTCGAGGCCTTCGTTATGTAGCTTA
GAGTTGTGTCCCTGAAGTTATTGCCGGCTCTACCGTCGCCTTGGTCCCTG
CCTTTCTACGTCTGTGAACCTGCCCTGTTCAGTCTTGGTTCGATCTTGCT
TTGGGTGCAGGTTTAGGAATAAATGCCAAGTTTTGTTGAGCCTCAGCCAA
TTTCCTACCGAGCAGCCTACGTTCTGCTGCAACCAATATTAACAGTGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:1590810..1596108+

>mRNA_P-fluviatile_contig20.4355.1 ID=mRNA_P-fluviatile_contig20.4355.1|Name=mRNA_P-fluviatile_contig20.4355.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1962bp|location=Sequence derived from alignment at P-fluviatile_contig20:1590810..1596108+ (Porterinema fluviatile SAG_2381)
ATGGAAGCGGCGGCAGCGGTTGCGACGGCAACAGCGTCGCGGGCTGCCGG
GTCTGCTGCGGAAGACGGCGGTGTGACCACGGCGTCGTCACGGTGGCAGC
GCCGACGGCGAGGAATAGGAAGCAGCAGGGATAGAGCGAGCTCGGAGCGC
GGACAGCCGGATAAATCACCGGGGGCAGGGCTAGTCCGAGAAACGCCAGC
GATGGAGCAAGCTGACCTGATTCCGAACATGGAAGCGGCGGCAGCGGTTG
CGACGGCAACAGCGTCGCGGGCTGCCGGGTCTGCTGCGGAAGACGGCGGT
GTGACCACGGCGTCGTCACGGTGGCAGCGCCGACGGCGAGGAATAGGAAG
CAGCAGGGATAGAGCGAGCTCGGAGCGCGGACAGCCGGATAAATCACCGG
GGGCAGGGCTAGTCCGAGAAACGCCAGCGATGGAGCAAGCTGACCTGATT
CCGAACGTATCCGAGAACGAGGGCGGAAAGGGCCACCTCATTTCGATGGA
GATGCAGAGGCGGAACAGGGAGCTGACCAAGGTTCAACAGAAGATCATCG
CGCTGCTCGTGAAGGGGAACGACATCGCGAGACGCAGGTATCCGAGAACG
AGGGCGGAAAGGGCCACCTCATTTCGATGGAGATGCAGAGGCGGAACAGG
GAGCTGACCAAGGTTCAACAGAAGATCATCGCGCTGCTCGTGAAGGGGAA
CGACATCGCGAGACGCAGGGAAGCAAGAGATCGGCAGCGGGGCACCAAAG
TCACCAAGAAGCCCCTTGCCAAGGGCCCTAGGCCGGGACAGTTGGGACCT
CACTACACGCTTCAGTCAGTTATGGACTTCAGGGGGAAGCAAGAGATCGG
CAGCGGGGCACCAAAGTCACCAAGAAGCCCCTTGCCAAGGGCCCTAGGCC
GGGACAGTTGGGACCTCACTACACGCTTCAGTCAGTTATGGACTTCAGGG
CGGCATTCAACTTCGTGGACGAGGACATGAGCGGCTGTCTCGATTCAGAG
GAATGGCGGCGCTTTCTGGACCGCTTCAACAGCAGTGTCGCGGCCATCAA
CATGCGCAGCATGTTCCTGCACCTCGACAAGCGGCATTCAACTTCGTGGA
CGAGGACATGAGCGGCTGTCTCGATTCAGAGGAATGGCGGCGCTTTCTGG
ACCGCTTCAACAGCAGTGTCGCGGCCATCAACATGCGCAGCATGTTCCTG
CACCTCGACAAGGATATGAGCGGCACCGTTGAGGTGGGAGAATTAGTGCC
GGTGGTCTTCAACAAAGCGTCGACGCCCCAACACGGCCTCATTAGGCATC
TAATCGAATACGAGAACACAATGGATATGAGCGGCACCGTTGAGGTGGGA
GAATTAGTGCCGGTGGTCTTCAACAAAGCGTCGACGCCCCAACACGGCCT
CATTAGGCATCTAATCGAATACGAGAACACAATGGACGTGAGACGCTTCA
ACAACAAACACTTGCCGGCGGCCCAGGCAACGCTGCAGCTGGATGACGCG
AAGAGACTCTTCGGACGTGAGACGCTTCAACAACAAACACTTGCCGGCGG
CCCAGGCAACGCTGCAGCTGGATGACGCGAAGAGACTCTTCGAGTTGTAC
GACACGTCCGGGTCGGGGCGGCTGGATCAAAAGACCGTCAGGAGCATGCT
GCTGGCGCTGAGGGTTCCACAGCTATCGTGGGACGCTCTGGTGAAGAGCG
CGCCCCTGCTGCAGACGGCTGCGACCATCACGTCGGATGAGTTCGCCGCT
GGTTTCTTCGAGGCCTTCGTTATGTAGAGTTGTACGACACGTCCGGGTCG
GGGCGGCTGGATCAAAAGACCGTCAGGAGCATGCTGCTGGCGCTGAGGGT
TCCACAGCTATCGTGGGACGCTCTGGTGAAGAGCGCGCCCCTGCTGCAGA
CGGCTGCGACCATCACGTCGGATGAGTTCGCCGCTGGTTTCTTCGAGGCC
TTCGTTATGTAG
back to top