mRNA_P-fluviatile_contig20.4329.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4329.1
Unique NamemRNA_P-fluviatile_contig20.4329.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: D7FLL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.280e-87
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1 
Query:    1 HLPTCVC--VCVMSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            H P C+     +M  IKSGKVVVLLAGRYAGRKAIVVKPFDEGSE+RKFGHAIVAGIDRYPRRVTKAMSK+KIKKRTK+KPF+KYVNVNH+MPTRYQVD+DLKKAVDE+AIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFF+KLRF
Sbjct:    9 HFPVCLAWFEAIMGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDETAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 162
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A836CBN1_9STRA (60S ribosomal protein L27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN1_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.340e-64
Identity = 102/142 (71.83%), Postives = 121/142 (85.21%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            M  IK+GKVV++LAGRYAGRKAIVVK +D GS DRKF HA+VAGIDRYPR+VTK+MSK K+ KR+K KPF+K+VNVNHLMPTRY  D++LK  V+ESA KAS  +VRKAV+K+FEERYLNQ  +KSEKKA+G KYFF KL F
Sbjct:    1 MGIIKAGKVVIMLAGRYAGRKAIVVKAYDSGSADRKFTHALVAGIDRYPRKVTKSMSKVKVAKRSKCKPFVKFVNVNHLMPTRYTADIELKTVVEESAFKASRPEVRKAVKKVFEERYLNQGQIKSEKKASGSKYFFAKLAF 142
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A7S4SWS4_9DINO (60S ribosomal protein L27 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SWS4_9DINO)

HSP 1 Score: 192 bits (487), Expect = 2.540e-60
Identity = 96/136 (70.59%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYF 438
            M  IKSGKVVV+LAGRYAGRKA+VVK +D+GS DRKF HA+V GIDRYP++VTK M+K KI KR+KMKPF+K +N+NHLMPTRY VDMDLKK VDE+A K +  + RK V+KIFE+RYLNQ   KSEKKA+GV+YF
Sbjct:    8 MGIIKSGKVVVVLAGRYAGRKAVVVKTYDDGSIDRKFSHAMVVGIDRYPKKVTKGMTKTKITKRSKMKPFLKCINLNHLMPTRYSVDMDLKKTVDEAAFKEAKKETRKTVKKIFEDRYLNQASGKSEKKASGVQYF 143
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A0W8DKH9_PHYNI (Platelet-activating factor acetylhydrolase IB subunit alpha n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DKH9_PHYNI)

HSP 1 Score: 192 bits (488), Expect = 4.560e-60
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            + S+K+GKVVVLL GR+AGRKAIVVK FDEG  DRKFGHAIVAGIDRYPR+VT+AM K K+KKR+K+KPF+KYVN NH+MPTRY  D+DLKK +D+  + A+P    + RK ++K+FEERYLNQ   KSEKKA GV +FF KLRF
Sbjct:   29 LCSVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVL-ANPESRIESRKTIKKVFEERYLNQAACKSEKKAAGVSFFFKKLRF 172
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: M4B173_HYAAE (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=M4B173_HYAAE)

HSP 1 Score: 191 bits (484), Expect = 7.500e-60
Identity = 96/144 (66.67%), Postives = 117/144 (81.25%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDV--RKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            M  +K+GKVVVLL GR+AGRKAIVVK FDEG  DRKFGHAIVAGIDRYPR+VT++MSK K+K+R+K+KPF+KYVN NH+MPTRY  D+DLKK +D+  +    T +  RK ++K+FEERYLNQ   KSEKKA GV +FF KLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGRGDRKFGHAIVAGIDRYPRKVTRSMSKAKVKQRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLGNPETRIESRKTIKKVFEERYLNQGSCKSEKKAAGVSFFFKKLRF 144
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A024GB05_9STRA (Uncharacterized protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GB05_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.800e-59
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKA--SPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            M  IK+GKVVVLL GR+AGRKAIVVK FDEG  DRK+G AIVAGIDRYPR+VT++M K KIKK++K+KPF+KYVN NH+MPTRY VD+DLKK +D+  +    S  + RK ++K+FEERYLNQ D  SEKKATGV +FF KLRF
Sbjct:   31 MGIIKNGKVVVLLNGRFAGRKAIVVKAFDEGVGDRKYGFAIVAGIDRYPRKVTRSMGKNKIKKKSKIKPFVKYVNYNHMMPTRYIVDIDLKKVLDDDVMSKPESRVETRKTIKKVFEERYLNQADCSSEKKATGVSFFFKKLRF 174
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A6U1L5V7_9STRA (60S ribosomal protein L27 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1L5V7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.160e-58
Identity = 92/142 (64.79%), Postives = 114/142 (80.28%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            M  IKSGKVV++L GR+AGRKAIVVK +D+G+ +R+F HA+VAGIDR PR+VT++MSKEKI+KRTKMKPF+KYVN  HLMPTRY VD+DLKK VDES +K    + RKA++K+FEERY  Q   K EKKA G  YF+ K+ F
Sbjct:    1 MGVIKSGKVVIVLQGRFAGRKAIVVKAYDDGNAERRFAHAMVAGIDRAPRKVTRSMSKEKIQKRTKMKPFLKYVNYTHLMPTRYVVDLDLKKIVDESGLKEGKAEARKAIKKVFEERYHQQSSAKXEKKAAGTMYFYKKMAF 142
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A397BII5_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397BII5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.820e-58
Identity = 94/147 (63.95%), Postives = 120/147 (81.63%), Query Frame = 1 
Query:   25 CVMSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            C + S+K+GKVVVLL GRYAGRKAIVVK +DEG  DRKFGHAIVAGIDRYPR++T++M K+K+ KR+K+KPF+KYVN NH++PTRY  D++LKK VD+  + A+P    + RK ++K+FE+RYLNQ   KSEKKA GV +FF KLRF
Sbjct:   11 CCVYSVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVTKRSKIKPFVKYVNYNHILPTRYVADIELKKVVDDEVL-ATPEARIESRKIIKKVFEDRYLNQGATKSEKKAAGVSFFFKKLRF 156
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A2D4BF17_PYTIN (60S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BF17_PYTIN)

HSP 1 Score: 186 bits (473), Expect = 3.540e-58
Identity = 95/145 (65.52%), Postives = 120/145 (82.76%), Query Frame = 1 
Query:   31 MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            M  +K+GKVV++L GR+AGRKA+VVK  DEG  DRKFGHAIVAGIDRYPR+VT+AMSK K+KK++K+KPFIK VN++H+MPTRY VD+DLKK +D+  + A+P    + RK ++K+FEERYLNQ  VKSEKKA GV +FF KLRF
Sbjct:    1 MGIVKNGKVVIMLNGRFAGRKAVVVKTHDEGHGDRKFGHAIVAGIDRYPRKVTRAMSKTKLKKKSKVKPFIKVVNLSHVMPTRYVVDIDLKKVLDDEVL-ANPESRIESRKTIKKVFEERYLNQSAVKSEKKAAGVSFFFKKLRF 144
[Close]
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Match: A0A1V9Z0C3_9STRA (60S ribosomal protein L27 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z0C3_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.230e-57
Identity = 91/142 (64.08%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:   37 SIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPRRVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIKASPTDV--RKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF 456
            S+K+GKVVV+L GRYAGRKAIVVK +DEG+ DRKFGHAIVAGIDRYPR++T++M K+K+ KR+K+KPF+K +N NH+MPTRY  D+DLKK +DE  +  +   V  RK ++K+FE+RYLNQ   KSEKKA GV +FF KLRF
Sbjct:    9 SVKNGKVVVVLNGRYAGRKAIVVKAYDEGNGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKIKPFVKAINYNHIMPTRYVADIDLKKVLDEEVLSKAEARVESRKTIKKVFEDRYLNQAACKSEKKAAGVSFFFKKLRF 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL5_ECTSI1.280e-8787.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBN1_9STRA1.340e-6471.8360S ribosomal protein L27 n=1 Tax=Tribonema minus ... [more]
A0A7S4SWS4_9DINO2.540e-6070.5960S ribosomal protein L27 (Fragment) n=1 Tax=Alexa... [more]
A0A0W8DKH9_PHYNI4.560e-6067.59Platelet-activating factor acetylhydrolase IB subu... [more]
M4B173_HYAAE7.500e-6066.67Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A024GB05_9STRA2.800e-5967.36Uncharacterized protein n=3 Tax=Albugo TaxID=65356... [more]
A0A6U1L5V7_9STRA1.160e-5864.7960S ribosomal protein L27 n=1 Tax=Pelagomonas calc... [more]
A0A397BII5_9STRA1.820e-5863.95Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A2D4BF17_PYTIN3.540e-5865.5260S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=... [more]
A0A1V9Z0C3_9STRA1.230e-5764.0860S ribosomal protein L27 n=3 Tax=Saprolegniaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1220173..1224269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue5e-67
Seed eggNOG ortholog2880.D7FLL5
Preferred nameRPL27
KEGG rclassRC00017
KEGG koko:K02901,ko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,ko03010,map00563,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG3418@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L27e
Ec32 orthologEc-17_000680.1
Exons3
Model size459
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4329.1prot_P-fluviatile_contig20.4329.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1220203..1224269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815905.2433906-UTR-P-fluviatile_contig20:1220172..12202021622815905.2433906-UTR-P-fluviatile_contig20:1220172..1220202Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1220173..1220202 +
1693563684.4322708-UTR-P-fluviatile_contig20:1220172..12202021693563684.4322708-UTR-P-fluviatile_contig20:1220172..1220202Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1220173..1220202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815905.258213-CDS-P-fluviatile_contig20:1220202..12203551622815905.258213-CDS-P-fluviatile_contig20:1220202..1220355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1220203..1220355 +
1693563684.6562574-CDS-P-fluviatile_contig20:1220202..12203551693563684.6562574-CDS-P-fluviatile_contig20:1220202..1220355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1220203..1220355 +
1622815905.268363-CDS-P-fluviatile_contig20:1221650..12217451622815905.268363-CDS-P-fluviatile_contig20:1221650..1221745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1221651..1221745 +
1693563684.6676047-CDS-P-fluviatile_contig20:1221650..12217451693563684.6676047-CDS-P-fluviatile_contig20:1221650..1221745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1221651..1221745 +
1622815905.277872-CDS-P-fluviatile_contig20:1224088..12242691622815905.277872-CDS-P-fluviatile_contig20:1224088..1224269Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1224089..1224269 +
1693563684.6777081-CDS-P-fluviatile_contig20:1224088..12242691693563684.6777081-CDS-P-fluviatile_contig20:1224088..1224269Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1224089..1224269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4329.1

>prot_P-fluviatile_contig20.4329.1 ID=prot_P-fluviatile_contig20.4329.1|Name=mRNA_P-fluviatile_contig20.4329.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MSSIKSGKVVVLLAGRYAGRKAIVVKPFDEGSEDRKFGHAIVAGIDRYPR
RVTKAMSKEKIKKRTKMKPFIKYVNVNHLMPTRYQVDMDLKKAVDESAIK
ASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFDKLRF*
back to top

mRNA from alignment at P-fluviatile_contig20:1220173..1224269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4329.1 ID=mRNA_P-fluviatile_contig20.4329.1|Name=mRNA_P-fluviatile_contig20.4329.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4097bp|location=Sequence derived from alignment at P-fluviatile_contig20:1220173..1224269+ (Porterinema fluviatile SAG_2381)
CACCTCCCGACCTGTGTGTGTGTGTGTGTGATGTCCAGCATCAAGTCGGG
CAAGGTCGTTGTCCTGCTTGCCGGGCGCTACGCTGGCCGCAAGGCCATCG
TCGTGAAGCCCTTCGACGAGGGATCCGAGGACCGCAAGTTCGGCCACGCG
ATCGTCGCTGGCATCGACCGCTACCCTCGCCGGGTGAGAGCCTTGTTTGT
GGCTGTACTGTAGCCGCACACCGAAACCCGTACCCCGTATCAAGACTGTT
TTCACGTTCTAGGCTGCCTCTTGTTACTCCCTCTTTCTCTGGGCGATTGG
CTGTTATACACTCGGCCATAACCCTCCAGTCCATGAGGAAACAAAGGATG
TTTTCGGGAATGTGGCATCTTCCGTCAAGCGGCAGCCTCCATCACGCCAT
CACTGCAGTTTTGGTGCGGCGAGTCATGGACAGTCGGAATGTAAGATCAA
GTCATGCTGTGCATGCAGCGCTCACTTCGACGGCGCCAGGTGCTGCTATG
TACCCATCCGAATTGTTTTTGCACCAGGAAGTGCCTACATGCAGGCTCGG
GTCCAAGCCGTGGTCTCAATCCAGCACGTTCCTCGTCTTTGCCACCGTTG
TCTACTGAAGGGTCTCGGGGGCATGTTGCCCATTATGCTCCGGCCCACGG
TTCCTGCTTATTCCACCGGGCTTCCCACGCCCAACACTGAGACTGCTTGC
AGGAGTTTAAAGCACACCAGGTCCTCGGCGAGAAAATCATTTTTTCCTTG
GTTGGTGTCTGCGTTGCCCCCAGCCAGCCCCGCTTCTGTTTGTTTGCTTT
TTTGTTGTGCCCACCGACCTTCGTCTTTTTTTTTTTTTCCTCTGGTTTTT
TTGGCGGTAACCATAATGGTGGTCGAGAAGATGTTGTGCGGAGTGGAGAA
CCCTCACTCCGCGCAAGGGGGATGATCTCACCACGTTGTGTTAAAATGGT
CAAGCACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTG
AAAGCCTTAAAAAATAAATTAAGCCATACGCGGCTGTCATCCTTATGCAA
GGAAGTAAGCACAAGATGCTGAACACCCTTAGCAGGATGCAGCGCACCCT
TCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGGTGTGAG
AGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTGCCGGCTTTGTAGGGAT
GCGAGGTCAATGGTCTAACGACTACGGCATGCACGATTATAAGTACACCC
CCACCGACCTTGACACCGAACGGGAGGTTACGCACCATGGCCTTCTTGCT
CACGACTTTGAATTTTCGTCTTGATTGAATGGTCGGTTGGCGGTTGGGTG
GATGTCAACGTTCGCTCGCTGGTTGTTCGACAACCTTTCCCAAGTCAGTC
GATTTCAGCCCTGAACCCGCGCCTGTGAACTCATCCACCCATCCCAACCC
GACCAACACCACCCCTGCGGATCATCAGGTCACCAAGGCAATGAGTAAGG
AGAAGATCAAGAAGCGCACAAAGATGAAACCCTTCATCAAGTACGTCAAC
GTCAACCACCTCATGCCCACCCGGTAAGTCTTGGGACTTTCAGGCACGCG
CGCCTCTCTCCTCCTCCCCCTCCCCAAACCCCTCGTCCCCCCCCCACCTT
CTACCTACCCCTGCCCTCTTTGCGTCCCCCCCCGCGCTCCCTTGTCCTTC
CTTTCTGGGCGGAAGGAGGGATGGCGAGGCGGGGGGAGGAGGCGAAAGAA
ATACCGTGAAAACTTTCTCGCTTCGCACGGTAGCTGTGGCAGCGATCGTT
ACTCCCTCTTAGCGACTTGTCAGCAAAGGGAAGAAAAAAAGAGGGTGCAC
CACTTTTCCCGAGCGGAGTATGTCTCTTCGCAAGAGACGTACTCCCCCTC
AATGGGTTTTTCGCACACTGGACCCCTCTCCTGATGACTCGTCGAGAAGA
CCGAGAATGATACCACACACTCATGCGAAACAAGCGAGCTTTGCGGTGTA
CTTAGGCCGACTTCGTGAAGGGATGGAAAATCAACAGTTGCCCCGCATTG
TTGACTTTCCATCCTCGCAAGGGTTGGCCCAGGGCAGGGGGTGGTAGCCG
GTGGGGGATCGGGCGGAGGATTTGGGGTCGGGTAGGAGGTAGGGGGCGCG
GTCAGTGTGCGGCGACGCGGTCCCCGGCCCGGATACGGTGAAGTACCCCT
CCCCCCCTCCCCCCGCTCTTTCACGGCACACAGTGGCAATGTCACGCCGT
GGTGTCTTGAGGAGAGGGTGAGGTGGGGGTACGAGGCGAAAAGCCGTTTC
AGGGTCGTGAGCTTTCTCAGTTTTTTCACTTATTCCGATTTTTTCTTTGG
CACCTCTTCAAGGCGACTGTCATTTAGAAGTGGAGAAATAGTCACTTCCT
GCAGGTGTAAGCCGCCAATTTATCTTCTTGCCCGTGCCAAACACCGCCTG
AAGAGTTCGCTGGCCCTTCTTGTGTCGCCGCGTCTCCGCCGGAATCACGC
TGCGGCCAGTTTACGTGGTGCAACGCGTAAAGTGTCGGAGCACATATATT
TGGAACCCTTCGCGCATGAGGACCGACCCAGGGCCCATCCCCCCGCGTGT
TGCCGTAGAATGTGTCGGCGTCGATCGAGAGGCAGCGTCATAAATGTCGG
CTTTCGACCCTTGGCGTCGTTTGCGGCCGGCCTGATTCCGGATGTGGATT
AGAAGCTTGTTCCATGAGACACATCCCAATTTTTAGCGAGAAAACACAGT
TTTTTTCAGACGGGGCTCTCCACGCCACAACAAAAGCTTTTGCAGCGGAG
CACGTCGGACCTGTCAACATTGCGAACTGAATTCCGTGCGACTTGGAATG
GCTGGAGCTGTCAGGCACTCTACAAATGTTCGAATATGAACGACGTTTGT
TCCAGCGACATGGAGGCCTGATGCGCCGGCCGGTGTCTTGGCGTGCATTC
TCGCGCTTCTTTCCCGCCGCGCTGCGGGTGACGGCTTCGCCTGCGGCAAA
ACGCGGCCTTTTTTCCACAGCCCCCAGAGCCGAGAATGACGGATCAAGTC
TTACGCTTGCCCTTCTGGCTGGGCATTGTCGGAATCCCTACCGCCGGCGC
CACTCTGTCCTTAATCGGCACACGAGGTCGACTTCCCGACGACGGCGACT
AGCGTGTGGTTGGTTCGCCTGTCCCGTCCCAAGAGACGGCGCTCTTCACT
CTCGCGGGCGGGCGCTCCCCGCCTCCGACGCGGAAACATACCGTGCGTTC
TCGCTCGCGATGCTGTCATTCCGGGTGCGGAAGTGTATGCCATGTGCCGG
TGTGTGGTGCCTTTCTTGAGAGCGCGGTGTTGACCGGTTCCCACTTGGGT
CCACGATGGCCGCCGCCACGATGAAACTTTGTTTTCACGCCCCCTCTCTC
CTCCTCCTCGCGACACCCATCGCCCGTGCAGCAATCAACCTCCAGCTTGC
GCGTGTGCGTTTTTGTTGTATTCCGTGGTGGACATGTGTTTTGCATTGCT
GGCTTTCCCCCCCCCTCTCCCCTCCCTCGGGCCCTTGCCACAAATTTCGA
TCCCCTGCCGTTGGGGTGCACACAGCTATCCGCAGCGCGCTGGGGCATGA
CGCGATGAACGATGATGCGCCCCATGTCCTAAAGAATTTGACAACGATTT
TTCGGGCGACGCTGACAAGGAGAGTGAAGGTTCATCATCAGCAGTGTGCC
GTGAGCGATAGCTGGGTCGTGCACTCCGGCTCCGAGTGCACATCTCCGTC
TCTCCCCAAGACCTTCTTGCATCCCCCGCCGTCGGGAGTGGCTCCACTTT
TCAGGGAAGCAGCAGGAAGAAATTATCGTTCTTTTGCCCCCCACCCTTTC
CGAACGCGCACGTGCCCCCCTTGCGTGCTTATCTCTTTACCCCACCTCCG
TTCCTGTTTTGAGCAGTTACCAGGTGGACATGGACCTCAAGAAGGCCGTG
GATGAGTCCGCCATTAAGGCGTCGCCTACTGACGTGAGGAAGGCGGTCAG
GAAGATCTTCGAGGAGAGGTATCTGAACCAGAAGGACGTCAAGTCGGAGA
AGAAGGCCACCGGTGTTAAGTACTTCTTCGACAAGCTCCGCTTCTAA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:1220173..1224269+

>mRNA_P-fluviatile_contig20.4329.1 ID=mRNA_P-fluviatile_contig20.4329.1|Name=mRNA_P-fluviatile_contig20.4329.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig20:1220173..1224269+ (Porterinema fluviatile SAG_2381)
ATGTCCAGCATCAAGTCGGGCAAGGTCGTTGTCCTGCTTGCCGGGCGCTA
CGCTGGCCGCAAGGCCATCGTCGTGAAGCCCTTCGACGAGGGATCCGAGG
ACCGCAAGTTCGGCCACGCGATCGTCGCTGGCATCGACCGCTACCCTCGC
CGGATGTCCAGCATCAAGTCGGGCAAGGTCGTTGTCCTGCTTGCCGGGCG
CTACGCTGGCCGCAAGGCCATCGTCGTGAAGCCCTTCGACGAGGGATCCG
AGGACCGCAAGTTCGGCCACGCGATCGTCGCTGGCATCGACCGCTACCCT
CGCCGGGTCACCAAGGCAATGAGTAAGGAGAAGATCAAGAAGCGCACAAA
GATGAAACCCTTCATCAAGTACGTCAACGTCAACCACCTCATGCCCACCC
GGTCACCAAGGCAATGAGTAAGGAGAAGATCAAGAAGCGCACAAAGATGA
AACCCTTCATCAAGTACGTCAACGTCAACCACCTCATGCCCACCCGTTAC
CAGGTGGACATGGACCTCAAGAAGGCCGTGGATGAGTCCGCCATTAAGGC
GTCGCCTACTGACGTGAGGAAGGCGGTCAGGAAGATCTTCGAGGAGAGGT
ATCTGAACCAGAAGGACGTCAAGTCGGAGAAGAAGGCCACCGGTGTTAAG
TACTTCTTCGACAAGCTCCGCTTCTAATTACCAGGTGGACATGGACCTCA
AGAAGGCCGTGGATGAGTCCGCCATTAAGGCGTCGCCTACTGACGTGAGG
AAGGCGGTCAGGAAGATCTTCGAGGAGAGGTATCTGAACCAGAAGGACGT
CAAGTCGGAGAAGAAGGCCACCGGTGTTAAGTACTTCTTCGACAAGCTCC
GCTTCTAA
back to top