mRNA_P-fluviatile_contig20.4326.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4326.1
Unique NamemRNA_P-fluviatile_contig20.4326.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4326.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-10
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:  445 GVDTAAELQQREREARELQAAPRAALKGSARRARTPQGRRTWQMI-TAYAFEGEEGLPAVPDHRKAEILGFHPRLNSRPRGSGRGISSS--PSVLLQC---WARTRTSTNPETGGATPP 783
            GV  A E+ Q   +AR+ QAA RAALK +A   RT  GR+T+Q I TA+A++G+EG   +P +RKAEILG  P   SR R   + +     P+  L+    W R+R     +   ATPP
Sbjct:   17 GVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDPAEFSRARQRAKSLQPRVPPAAALEAGAYWYRSRR----KRSDATPP 131
[Close]
BLAST of mRNA_P-fluviatile_contig20.4326.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.040e-10
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:  436 AEQGVDTAAELQQRE---REARELQAAPRAALKGSARRARTPQGRRTWQMI-TAYAFEGEEGLPAVPDHRKAEILGFHPRLNSRPRGSGRGISSS--PSVLLQC---WARTRTSTNPETGGATPP 783
            +++G+  A ELQ+ +    +AR+ QAA R ALK +A   RT QGR+T+Q I TA A++G+EG  A+P +RKAEILG  P   SR R   + +     P+  L+    W R+R     +   ATPP
Sbjct:   14 SQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPPAAALEAGAYWYRSRR----KRSDATPP 134
[Close]
BLAST of mRNA_P-fluviatile_contig20.4326.1 vs. uniprot
Match: A0A6H5KQH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.810e-8
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  484 EARELQAAPRAALKGSARRARTPQGRRTWQMI-TAYAFEGEEGLPAVPDHRKAEILGFHPRLNSRPRGSGRGISSS--PSVLLQCWARTRTSTNPETGGATPP 783
            +AR+ QA  RAALK +A   RT QGR+T+Q I TA A++G+EG  A+P +RKAEILG  P   SR R   + +     P+  L+  A +  S    +  ATPP
Sbjct:   31 DARQFQATSRAALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDPAEFSRARQRVKSLQPHLPPAAALEAGAYSYRSRRKRSD-ATPP 132
[Close]
BLAST of mRNA_P-fluviatile_contig20.4326.1 vs. uniprot
Match: A0A6H5JI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI78_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.660e-8
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  445 GVDTAAELQQREREARELQAAPRAALKGSARRARTPQGRRTWQMI-TAYAFEGEEGLPAVPDHRKAEILGFHP 660
            GV  A E+ Q   +AR+ QAA RAALK +A   RT  GR+T+Q I TA+A++G+EG   +P +RKAEILG  P
Sbjct:   17 GVPAAQEIHQELADARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDP 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIV8_9PHAE1.460e-1042.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIV9_9PHAE9.040e-1040.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQH6_9PHAE1.810e-843.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI78_9PHAE7.660e-852.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:1197515..1198813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size872
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4326.1prot_P-fluviatile_contig20.4326.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 1197625..1198678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815891.5693927-UTR-P-fluviatile_contig20:1197514..11976241622815891.5693927-UTR-P-fluviatile_contig20:1197514..1197624Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1197515..1197624 +
1693563659.374356-UTR-P-fluviatile_contig20:1197514..11976241693563659.374356-UTR-P-fluviatile_contig20:1197514..1197624Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1197515..1197624 +
1622815891.6002243-UTR-P-fluviatile_contig20:1198678..11988131622815891.6002243-UTR-P-fluviatile_contig20:1198678..1198813Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1198679..1198813 +
1693563659.401621-UTR-P-fluviatile_contig20:1198678..11988131693563659.401621-UTR-P-fluviatile_contig20:1198678..1198813Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 1198679..1198813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815891.5806837-CDS-P-fluviatile_contig20:1197624..11978581622815891.5806837-CDS-P-fluviatile_contig20:1197624..1197858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1197625..1197858 +
1693563659.3834503-CDS-P-fluviatile_contig20:1197624..11978581693563659.3834503-CDS-P-fluviatile_contig20:1197624..1197858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1197625..1197858 +
1622815891.5914655-CDS-P-fluviatile_contig20:1198285..11986781622815891.5914655-CDS-P-fluviatile_contig20:1198285..1198678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1198286..1198678 +
1693563659.392541-CDS-P-fluviatile_contig20:1198285..11986781693563659.392541-CDS-P-fluviatile_contig20:1198285..1198678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 1198286..1198678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4326.1

>prot_P-fluviatile_contig20.4326.1 ID=prot_P-fluviatile_contig20.4326.1|Name=mRNA_P-fluviatile_contig20.4326.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=209bp
MLMRWLCSRWPAKQITSSWRGGGRQLCSRPTACMHRWWGRQQHLLPRHSD
HFASQSPGTRTRAAFSDSSSASPSGDPEPPNQSDWRNASQPSKAAIHSMS
AEGLLMHRGGTRSGHRCGASTAGAGSARASSGAAGSSEGLSKACAHPPGK
ENLADDHSLRVRGGGGVASGARSPQGRDSRLSPPSQFSAARQRARNLQLA
LRPAAVLG*
back to top

mRNA from alignment at P-fluviatile_contig20:1197515..1198813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4326.1 ID=mRNA_P-fluviatile_contig20.4326.1|Name=mRNA_P-fluviatile_contig20.4326.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1299bp|location=Sequence derived from alignment at P-fluviatile_contig20:1197515..1198813+ (Porterinema fluviatile SAG_2381)
CGGTCGAACAAGCGTGGGCGCCACACGAACGAGGCCTTAAAAGCTTATTT
CCACCCTCGTCGGCAAGATGGCTAGAGGCAAAAAGGGTAAGCAGAACACC
AGCTATCCGGATGCTAATGAGGTGGCTTTGTTCAAGATGGCCCGCGAAAC
AGATCACGAGTTCATGGAGGGGAGGCGGAAGGCAGCTCTGTTCAAGGCCA
ACAGCATGTATGCATCGGTGGTGGGGCCGTCAACAGCATCTCCTGCCTCG
TCATAGCGATCATTTTGCTTCGCAGTCGCCGGGCACCAGGACGCGTGCTG
CTTTCAGCGACAGCAGCAGTGCCAGCCCATCTGGCGATCCCGAGGTACGA
GAAAACTGGTCCAGCAGTGAAGTGTGTACGCGCGCGCAAGTGTGTGCTGT
TCTGAACGAACAGAAGGAACAGCAGAGTCCTTCCGAGGAGTATAGCGCAG
CCTGTGGCGACTGCTGCTGTAATGCGCACCCCTTGAAGACAACTTAGACA
TTGTTTTTTGAGCCCTGCTGGTGCTGTGTGAGGAGAGGTGCCTTACGATA
TACAGCTATTAATAGTCCTTATGTGCTCTGATGTGGATATCTTCATTTGC
TTATGCTGCACCACTAATACTTGTTGACCAATAATGTACATGATAATGCC
CCCTCCGCATGGTTGTGACACCTGGTGGAAAGTATCCAAACTTGTTGCTG
CTGCTGTTCCAATCTGCCGTTGCCTTACCTGCTCTCCTCACTCTCCCTTC
CCTACTGCCACCCACTTCCAGCCGCCAAACCAGTCCGACTGGAGAAATGC
CTCTCAACCGTCTAAAGCCGCGATACACAGCATGTCGGCGGAAGGCTTGT
TGATGCACCGCGGCGGAACAAGGAGTGGACACCGCTGCGGAGCTTCAACA
GCGGGAGCGGGAAGCGCGAGAGCTTCAAGCGGCGCCGCGGGCAGCTCTGA
AGGGCTCAGCAAGGCGTGCGCGCACCCCCCAGGGAAGGAGAACTTGGCAG
ATGATCACAGCTTACGCGTTCGAGGGGGAGGAGGGGTTGCCAGCGGTGCC
AGATCACCGCAAGGCCGAGATTCTAGGCTTTCACCCCCGTCTCAATTCTC
GGCCGCGCGGCAGCGGGCGAGGAATCTCCAGCTCGCCCTCCGTCCTGCTG
CAGTGTTGGGCTAGGACGCGTACTAGTACCAACCCCGAGACAGGAGGAGC
GACGCCACCGCACCGGAGCTGGTGGTCGGCGTATCGCATCCGACGCGAGC
ACGCCAAGCTTGTCGAAAAGAAAGCCATCTATGTGTGGAGAAATTCGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:1197515..1198813+

>mRNA_P-fluviatile_contig20.4326.1 ID=mRNA_P-fluviatile_contig20.4326.1|Name=mRNA_P-fluviatile_contig20.4326.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1254bp|location=Sequence derived from alignment at P-fluviatile_contig20:1197515..1198813+ (Porterinema fluviatile SAG_2381)
ATGCTAATGAGGTGGCTTTGTTCAAGATGGCCCGCGAAACAGATCACGAG
TTCATGGAGGGGAGGCGGAAGGCAGCTCTGTTCAAGGCCAACAGCATGTA
TGCATCGGTGGTGGGGCCGTCAACAGCATCTCCTGCCTCGTCATAGCGAT
CATTTTGCTTCGCAGTCGCCGGGCACCAGGACGCGTGCTGCTTTCAGCGA
CAGCAGCAGTGCCAGCCCATCTGGCGATCCCGAGATGCTAATGAGGTGGC
TTTGTTCAAGATGGCCCGCGAAACAGATCACGAGTTCATGGAGGGGAGGC
GGAAGGCAGCTCTGTTCAAGGCCAACAGCATGTATGCATCGGTGGTGGGG
CCGTCAACAGCATCTCCTGCCTCGTCATAGCGATCATTTTGCTTCGCAGT
CGCCGGGCACCAGGACGCGTGCTGCTTTCAGCGACAGCAGCAGTGCCAGC
CCATCTGGCGATCCCGAGCCGCCAAACCAGTCCGACTGGAGAAATGCCTC
TCAACCGTCTAAAGCCGCGATACACAGCATGTCGGCGGAAGGCTTGTTGA
TGCACCGCGGCGGAACAAGGAGTGGACACCGCTGCGGAGCTTCAACAGCG
GGAGCGGGAAGCGCGAGAGCTTCAAGCGGCGCCGCGGGCAGCTCTGAAGG
GCTCAGCAAGGCGTGCGCGCACCCCCCAGGGAAGGAGAACTTGGCAGATG
ATCACAGCTTACGCGTTCGAGGGGGAGGAGGGGTTGCCAGCGGTGCCAGA
TCACCGCAAGGCCGAGATTCTAGGCTTTCACCCCCGTCTCAATTCTCGGC
CGCGCGGCAGCGGGCGAGGAATCTCCAGCTCGCCCTCCGTCCTGCTGCAG
TGTTGGGCTAGCCGCCAAACCAGTCCGACTGGAGAAATGCCTCTCAACCG
TCTAAAGCCGCGATACACAGCATGTCGGCGGAAGGCTTGTTGATGCACCG
CGGCGGAACAAGGAGTGGACACCGCTGCGGAGCTTCAACAGCGGGAGCGG
GAAGCGCGAGAGCTTCAAGCGGCGCCGCGGGCAGCTCTGAAGGGCTCAGC
AAGGCGTGCGCGCACCCCCCAGGGAAGGAGAACTTGGCAGATGATCACAG
CTTACGCGTTCGAGGGGGAGGAGGGGTTGCCAGCGGTGCCAGATCACCGC
AAGGCCGAGATTCTAGGCTTTCACCCCCGTCTCAATTCTCGGCCGCGCGG
CAGCGGGCGAGGAATCTCCAGCTCGCCCTCCGTCCTGCTGCAGTGTTGGG
CTAG
back to top