mRNA_P-fluviatile_contig20.4302.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4302.1
Unique NamemRNA_P-fluviatile_contig20.4302.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:940884..944444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815891.4232945-CDS-P-fluviatile_contig20:940883..9410851622815891.4232945-CDS-P-fluviatile_contig20:940883..941085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 940884..941085 -
1693563659.2846208-CDS-P-fluviatile_contig20:940883..9410851693563659.2846208-CDS-P-fluviatile_contig20:940883..941085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 940884..941085 -
1622815891.4338262-CDS-P-fluviatile_contig20:944319..9444441622815891.4338262-CDS-P-fluviatile_contig20:944319..944444Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 944320..944444 -
1693563659.2942524-CDS-P-fluviatile_contig20:944319..9444441693563659.2942524-CDS-P-fluviatile_contig20:944319..944444Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 944320..944444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4302.1prot_P-fluviatile_contig20.4302.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 940884..944444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4302.1

>prot_P-fluviatile_contig20.4302.1 ID=prot_P-fluviatile_contig20.4302.1|Name=mRNA_P-fluviatile_contig20.4302.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
ESYLKSRSEIGIEDASASEARQETQTHKIYEILVVGFTILFIAPKRPRQG
SCEDVRASRKSRASHEADNLCRRRGEVGCCQLPAERQRKQQLQEQHPRQR
YLDAVRKR*
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mRNA from alignment at P-fluviatile_contig20:940884..944444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4302.1 ID=mRNA_P-fluviatile_contig20.4302.1|Name=mRNA_P-fluviatile_contig20.4302.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3561bp|location=Sequence derived from alignment at P-fluviatile_contig20:940884..944444- (Porterinema fluviatile SAG_2381)
GAGAGCTACCTCAAATCAAGATCGGAGATAGGGATCGAAGACGCAAGCGC
CAGCGAGGCAAGGCAGGAGACCCAGACGCACAAGATATACGAGATCCTTG
TGGTCGGATTCACAATACTTTTCATGTGAGTCGTTGTGTGGTGGATTTTT
TTCCCATTCATATCTACCTGGGTGGTATCCGATGTGTGTGTGCAACTGGT
GGGAGACAGGAAGAGACAGAGACAGCCAAAGAGACCCCCGCGCGCTATCT
CGAGCGATCGATGCCTTTGGATTCCGTGAGGCAGCCGCCACCTCGATCGG
AGGTCCGCCCCCCTTGAGCTCGCTTCTCTCGCGAAGATAGATGTTGTACG
TGCTCGGAAGAACATGCCGGTGGATAGATCGATGTGTGTTCGAGCTCGTT
TCAGCCTCTGTCTTGCCTTCAGCACCCTCTGGCCTGTGCCCGTCTTGAGT
TTCCATAGATAGAAAGCCCAAAGCAGAGTGCGACTTCATGTGCAGTGGTC
AGCACCAGGAGAGAGGGAGGGAGGGAGGGAGGGAGCGCTCGAAAGAAAAA
AGAGCCTCGCCTGATATGTCCTCCATCGCGTCCGCCATCCGAATCTTGGG
GTGGTTGCGTGGGCCGACGAACCAGTCACTCAAGGCTCATCGCAGCAGCA
GCAGCAGCAAGACGTGATACGTGCGGTTACCCGGTGCTCCATGGGGGGAC
GCTCAAGGCTCATCGTGGCAGCAGGACGTGATATATGCGGTTACCCGGTG
TTCAACCGGTGGATACCGGACGAAGAAAGAGACAGCTTTTCCGCCGAATG
TTTCAGATTTTTTTGTCTCTCCGCTGTTGTTTCCAAAGTCCAGAGAAGGA
AAGCATCGTTGTTCCCCTTGACACAAGCGGGAGGCGGCGGGAGGCATCTC
TCGCTCTCTATGAACGGCAACACGATCACTCATCCAACACACATAAACCC
TCGCGTACTATCTCGCAGCGTTATTCTCCATTCATGTCATATTTTGTTGT
GAGACACCCGTCGATCGGGTTTGTCCTCCCCTCTTTCTGCGACGACACAC
ACACACGAACAGTACCCCTCTGTAATCCAGATCTTTCTCGCCTCGCACGT
TCCGCAGCTTTGGCGCATCTCCCACCCCACAGTGAATTTACCCTACGTGG
CGATAGCGATCCTGTAAAACGGCAACACGATCACTCATCCAAACACACAT
AAACCCTCGCGTACTATCTCGCAGCGTTGTTCTCCATTCATGTCAAATTT
TGTTGTGAGACACCCGTCGATCGGGGCTGTCAAGGTCTCCCCTCATTCTG
CGACGACACACACACACGAACAGTCCCCCTCTGTAATCCAGATCTTTCTC
GCCTCGCACGTGCCGCAGCTTTGCTCTCCCACCCCACAGTGTATTTACCC
TACGTGGCGATAGCGATCCTGTAAAATGGCAACACGATCACTCATCCAAA
CACGCATAAACCCTCGCGTACTATCTCGCAGCGTTGTTCTCCATTCATGT
CAAATTTTGTTGTGAGACACCCGTCGATCGGGTCTGTCAAGGTCTCCTCT
TTCTGCGACGACACACACTCACGAACAGTCCCCCTCTGTAATCCAGATCT
TTCTCGCCTCGCACGTGCCGCAGCTTTGGCGCATCTCCCACCCCACAGTG
AATTTACCCTACGTGGCGATAGCGATCCTGTAAAACGGCAACACGATCAC
TCATCCAAACACACATAAACCCTCGCGTACTATCTCGCAGCGTTGTTCTC
CATTCATGTCATATTTTGTTGTGAGACACCCGTCGATCGGGGCTGTCAAG
GTCTCCCCTCTTTCTGCGACGACACACACTCACGAACAGTCCCCCTCTAT
AATCCAGATCTTTCTCGCCTCGCACGTGCCGCAGCTTTGGCGCATCTCCC
ACCCCACAGTGAATTTTCCCTACGTGGCGATAGCGATCCTGTAAAATGAT
ACCTACCGACGAGGCGCATCGCGCGTGACCAGGATCATGAGGAATGTACC
TAGCCCTTGCTTTTCTCACGGGACTCGAAAACGTGTTCGTAGATCTAGAC
TGGAAGAGTCTAGTAGGGCACAGTCGTTTTCTACGTGACATGCCAAATCA
TAAAAGGACGGGGTGTGTATTCTGTCAGAAAGGGATCTTTGTGTGTCTCT
TTTCGATGCTAGTGTCGCGAGAATCATGACACCTCCTGTTCAAACCGTTA
ATCGCGAGACGCCTCGTGAGCTGAAGCTATGGGTACGTCTCCAAGCTGTG
AAGAGAATAAAATGGCAAGGAAGCGAAAATTAGTTGAGATGAAGTGACGG
CGTCATTTTCGACTCAGCGATCGCCGGCTCACTAAAGGCCGTGAGATTTA
GCGAGATTGACTAGGTCTAGACTAAAACGAGGGTCGTTGCTGCTAGGCGG
TTTCAACTTCTCTGCAGAGCGGTTTGCCCGGTGAATCAAGTCCCAGATTT
CGGCTCACTTCCATTTTTTCGAAAAGAACTTGTCGTGCCGAATCAATCAA
CCAGTCAGCGCGCTCGAGCCTTTCTTTCAGGCGCCGAACATCCAAAGTTT
GAGAACGACTGCTGAGATGCCAAGTGCAATATGCTGACTGTCTGCTCCTC
ATTGCTATCAGCAGCAGCATGTGTCCTGCTAGCGGCGACCACTTGCCGAC
AATTTTTTTTTAATAAAATGAATTGAAATTTAGCTATAGTTAGACTATTA
GTCTATGGCGGAAAGGAGCGCTGCGCCAACACTTGTATCGCACGGTCGCC
TGAAGTGTGAGCCGTGTCTTCTTGCTAAGAAGCCTGTTAGGCCCAAAAGA
TTTCATACATATGGGGTCAAGCCTTCTTGGAATAAGGCTTTGCTTGTTTC
ACTTTTTTGTTTCTGGTATGGCAGCTGCCTCTCAAAGGCTCACATACATG
GTAGGGAGAGACTCGAAGGGCAAGGCGGTGCGAAGCAGCATGAAGCCCCC
GGCCTGGCACAGAAAAAAAACGATTTGGCATGCAGTCAAGCACTTGTGTC
AGGGCTTCAAGTTTTCTCGCTTCTTATTAGACCACGCGTGGTGCCCGCTG
GGATGTGTTCCACCCTCTCGACGGGTTTGGAAGATAATAAGGAGAGGGAC
CTCGTCCCCCGTAAAAGCATGCAGATCCATGCCACAATAATATTAGAGGA
GAGGCCCCCTTATTGGGTTACCGTGAATTAAGGAGTTGCACGACCGAGTA
GCTCTAAAAGGGTCTCTAGTATCGCTCGCGGCAATGCTCGGCATGCCTGC
ATTTTTTATTTACCTTTCTTTTATGCGTTTGTATTTCCCGTCTCTGAATT
GCTGTCGGTCCGCCCCCACTGTACATTACTCGTCTCGTTTCGTTCTTCTT
GTCGGTCAGAGCACCGAAACGGCCGCGCCAAGGTAGCTGCGAGGATGTAC
GCGCGAGCCGCAAATCTCGTGCGTCTCACGAAGCCGACAATCTCTGCCGG
CGACGGGGGGAAGTCGGGTGCTGTCAACTCCCGGCAGAACGACAACGAAA
ACAACAACTTCAGGAGCAACATCCTAGGCAACGATATTTGGATGCAGTGC
GGAAGCGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:940884..944444-

>mRNA_P-fluviatile_contig20.4302.1 ID=mRNA_P-fluviatile_contig20.4302.1|Name=mRNA_P-fluviatile_contig20.4302.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig20:940884..944444- (Porterinema fluviatile SAG_2381)
GAGAGCTACCTCAAATCAAGATCGGAGATAGGGATCGAAGACGCAAGCGC
CAGCGAGGCAAGGCAGGAGACCCAGACGCACAAGATATACGAGATCCTTG
TGGTCGGATTCACAATACTTTTCATGAGAGCTACCTCAAATCAAGATCGG
AGATAGGGATCGAAGACGCAAGCGCCAGCGAGGCAAGGCAGGAGACCCAG
ACGCACAAGATATACGAGATCCTTGTGGTCGGATTCACAATACTTTTCAT
AGCACCGAAACGGCCGCGCCAAGGTAGCTGCGAGGATGTACGCGCGAGCC
GCAAATCTCGTGCGTCTCACGAAGCCGACAATCTCTGCCGGCGACGGGGG
GAAGTCGGGTGCTGTCAACTCCCGGCAGAACGACAACGAAAACAACAACT
TCAGGAGCAACATCCTAGGCAACGATATTTGGATGCAGTGCGGAAGCGGT
AGAGCACCGAAACGGCCGCGCCAAGGTAGCTGCGAGGATGTACGCGCGAG
CCGCAAATCTCGTGCGTCTCACGAAGCCGACAATCTCTGCCGGCGACGGG
GGGAAGTCGGGTGCTGTCAACTCCCGGCAGAACGACAACGAAAACAACAA
CTTCAGGAGCAACATCCTAGGCAACGATATTTGGATGCAGTGCGGAAGCG
GTAG
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