mRNA_P-fluviatile_contig20.4244.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4244.1
Unique NamemRNA_P-fluviatile_contig20.4244.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:191162..191494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.0075688-CDS-P-fluviatile_contig20:191161..1914791622815892.0075688-CDS-P-fluviatile_contig20:191161..191479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 191162..191479 +
1693563661.7520401-CDS-P-fluviatile_contig20:191161..1914791693563661.7520401-CDS-P-fluviatile_contig20:191161..191479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 191162..191479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.0221872-UTR-P-fluviatile_contig20:191479..1914941622815892.0221872-UTR-P-fluviatile_contig20:191479..191494Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 191480..191494 +
1693563661.7596257-UTR-P-fluviatile_contig20:191479..1914941693563661.7596257-UTR-P-fluviatile_contig20:191479..191494Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 191480..191494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4244.1prot_P-fluviatile_contig20.4244.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 191162..191479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4244.1

>prot_P-fluviatile_contig20.4244.1 ID=prot_P-fluviatile_contig20.4244.1|Name=mRNA_P-fluviatile_contig20.4244.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MRSPVGKALTPNWCRGTIASRGGSVIGRKHSKRSQFPRPKTEKVGDNTNN
TNANNTSTNNSSLEVSEAPREETLPPLPSKHAQQLKTPPLGRQYVLLPPH
SHKKL*
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mRNA from alignment at P-fluviatile_contig20:191162..191494+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4244.1 ID=mRNA_P-fluviatile_contig20.4244.1|Name=mRNA_P-fluviatile_contig20.4244.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=333bp|location=Sequence derived from alignment at P-fluviatile_contig20:191162..191494+ (Porterinema fluviatile SAG_2381)
ATGAGGTCACCCGTAGGAAAGGCATTGACACCCAATTGGTGCAGGGGCAC
TATTGCGAGTAGGGGTGGGTCGGTGATCGGAAGAAAACACAGCAAACGGT
CGCAATTTCCACGACCAAAGACAGAGAAAGTGGGCGACAACACCAACAAC
ACCAACGCCAACAACACCAGCACCAATAACAGCTCCCTAGAAGTAAGCGA
AGCTCCGCGGGAAGAAACGCTACCTCCGCTCCCGTCGAAACACGCTCAGC
AACTCAAAACCCCTCCGCTGGGCCGTCAATATGTGCTGCTACCACCCCAC
TCACATAAGAAGCTCTGAGCGTGGGTGACAGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:191162..191494+

>mRNA_P-fluviatile_contig20.4244.1 ID=mRNA_P-fluviatile_contig20.4244.1|Name=mRNA_P-fluviatile_contig20.4244.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig20:191162..191494+ (Porterinema fluviatile SAG_2381)
ATGAGGTCACCCGTAGGAAAGGCATTGACACCCAATTGGTGCAGGGGCAC
TATTGCGAGTAGGGGTGGGTCGGTGATCGGAAGAAAACACAGCAAACGGT
CGCAATTTCCACGACCAAAGACAGAGAAAGTGGGCGACAACACCAACAAC
ACCAACGCCAACAACACCAGCACCAATAACAGCTCCCTAGAAGTAAGCGA
AGCTCCGCGGGAAGAAACGCTACCTCCGCTCCCGTCGAAACACGCTCAGC
AACTCAAAACCCCTCCGCTGGGCCGTCAATATGTGCTGCTACCACCCCAC
TCACATAAGAAGCTCTGAATGAGGTCACCCGTAGGAAAGGCATTGACACC
CAATTGGTGCAGGGGCACTATTGCGAGTAGGGGTGGGTCGGTGATCGGAA
GAAAACACAGCAAACGGTCGCAATTTCCACGACCAAAGACAGAGAAAGTG
GGCGACAACACCAACAACACCAACGCCAACAACACCAGCACCAATAACAG
CTCCCTAGAAGTAAGCGAAGCTCCGCGGGAAGAAACGCTACCTCCGCTCC
CGTCGAAACACGCTCAGCAACTCAAAACCCCTCCGCTGGGCCGTCAATAT
GTGCTGCTACCACCCCACTCACATAAGAAGCTCTGA
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