mRNA_P-fluviatile_contig2.4060.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.4060.1
Unique NamemRNA_P-fluviatile_contig2.4060.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.4060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:3725694..3729076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size781
Cds size735
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.4060.1prot_P-fluviatile_contig2.4060.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 3725740..3729076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.397214-UTR-P-fluviatile_contig2:3725693..37257391622815817.397214-UTR-P-fluviatile_contig2:3725693..3725739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 3725694..3725739 +
1693563423.3310454-UTR-P-fluviatile_contig2:3725693..37257391693563423.3310454-UTR-P-fluviatile_contig2:3725693..3725739Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 3725694..3725739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.4093223-CDS-P-fluviatile_contig2:3725739..37260421622815817.4093223-CDS-P-fluviatile_contig2:3725739..3726042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3725740..3726042 +
1693563423.344623-CDS-P-fluviatile_contig2:3725739..37260421693563423.344623-CDS-P-fluviatile_contig2:3725739..3726042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3725740..3726042 +
1622815817.4201028-CDS-P-fluviatile_contig2:3728327..37286601622815817.4201028-CDS-P-fluviatile_contig2:3728327..3728660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3728328..3728660 +
1693563423.3562927-CDS-P-fluviatile_contig2:3728327..37286601693563423.3562927-CDS-P-fluviatile_contig2:3728327..3728660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3728328..3728660 +
1622815817.43414-CDS-P-fluviatile_contig2:3728977..37290761622815817.43414-CDS-P-fluviatile_contig2:3728977..3729076Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3728978..3729076 +
1693563423.3651454-CDS-P-fluviatile_contig2:3728977..37290761693563423.3651454-CDS-P-fluviatile_contig2:3728977..3729076Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 3728978..3729076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.4060.1

>prot_P-fluviatile_contig2.4060.1 ID=prot_P-fluviatile_contig2.4060.1|Name=mRNA_P-fluviatile_contig2.4060.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=245bp
MGCTQSCERSGGGNGVGAVVKGEKEAGHRQKHQHAFPVQEDEMKLPSRPQ
QQDAPSALPAVNYGSLAEERMSLSRRIPSSSSAAAAVAAAPGKGDGPTGA
QQIRSPPGERPGERPAAPPSDKRDSAAVAAAAAGGGRGGLNRSSSAVSNT
SAVSVVSVAYGQVAALTATGAGSPAAIAAPAVAALRQLSVAVRAARICRR
PLDSLLERGDDAVEMLVQACQPKSAPTPPASPSGIFASAGARSEA
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mRNA from alignment at P-fluviatile_contig2:3725694..3729076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.4060.1 ID=mRNA_P-fluviatile_contig2.4060.1|Name=mRNA_P-fluviatile_contig2.4060.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3383bp|location=Sequence derived from alignment at P-fluviatile_contig2:3725694..3729076+ (Porterinema fluviatile SAG_2381)
AAAAAACTAGAGGGAGGTTTGCTCCTGCGTCCCGCTTCCAACGACCATGG
GCTGCACCCAAAGCTGTGAGCGCAGCGGAGGGGGCAATGGTGTTGGTGCG
GTGGTCAAGGGAGAGAAAGAAGCCGGGCATCGCCAGAAGCACCAGCACGC
CTTCCCTGTGCAAGAAGACGAGATGAAGCTCCCAAGCCGGCCTCAGCAGC
AAGATGCTCCCTCCGCTCTCCCCGCCGTGAATTACGGTAGCCTGGCGGAG
GAGAGGATGTCGCTGTCGCGAAGGATCCCTTCATCGTCATCTGCAGCAGC
AGCAGTAGCAGCAGCGCCAGGGAAGGGCGATGGTCCCACGGGCGCCCAGG
TGTGTTTGCGCATCCGTGGGGGGTTATCTCCTCTCTTCGTTTGAATTTTC
TACTTTTTATCATATTTTAATCTTTCGCCGTTTGGGGGCAGCAGTGACGC
CCTCTCCAACGAACATTTTACGCGTGGTACACCAAGCAGAGGCGTAAAGA
AAGAAACTCGCGTGATGGAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGGTATTTGAGACATGGCGGCACTTGAAGGCAGC
GCGCGAGAGGGAGCGTGCGGTCTCTGGGACATGAAATCCTGGCGTTGAAA
GTTGCGATCGATGTAACACACCCAAACATGCCCGCGCCGGCTGGTGTTGT
GTTCCTCTTCACACTGGCGTACAGATGCACACGTACATCAGCCTAGATGA
GCAGGCAACAGCGTCGCCCGTCGCCCGCTGCCCCTCGCCCTCCCCCGCCT
CCCCTGTGCGGGCCATGGGCCTTTATTCTCGCTGGGTGTCGGTCGAACAA
ACTCTCTGTCGGGGGGCGGCCCACCTTTCGTTACACATCCGTGCGTCACG
GGCATGACCCCCCCACCGGCTAACGTTTCTCTGTCTCCCTCTCTCTCTCT
CTCTCTCGTTTGAGGCCACGATACGGCGGTATGTAGGGAATGTAGGAGGA
AGCAGTCCGTGATTTTGGCCCTGCCCATATGTTCGTTCGTGGGTAACGGT
CATGGACGGCAAGCAAACACCTCAAACCTATTTTTCTAACTTGATCAGGC
CCGTTGGCAAGGCACGCTCACATATTTGCGTGGAGAGGTCAATAGTCATT
GCGCGCTCTCAACCGATGTATGATGAGAAATTGGGCGGGAGTTGTCCTAT
TTGTTGTGGGCGCTCCACCTGTCTTGCTGCCCGAGGGAATTGGGGCTCGA
CGAGCTGCAAGAATGAGAAACTTTAAAGCCTGAGGAAGCGACTTTTCAGC
CTTTTCGTCTCGCTGTGAAAAGAAACGAGCCGCCCCTCGAAGTCATTCCG
CAAAACGTCGGCATTCTCTCGAGGGTAAAGTCCTTCGCCACACAAACACA
TCGGACGGGACGCACAACCGCACGGAGGGCGGCATTTTTGTGGACGCATT
TCCGCGCTAGGTTGTACCACTCGGGAAAAACGTACGTTTCGGCGTATACG
CGCTGGCATAGCTGCACCAACAATGGCCCACGTTGCGGAGCCCACACTGT
ACCTGAAACGATGGCGGTGGGGGACAGTGCGTGACAAATTCTGAAACCCA
CAATACCCATAACCCCACCGGTGGCGAGGCATCGAGACATCGCGCCGCAT
GCCCACGAAACGACGATTTAGCACCCCTATTTGAAACTATGTGTGCAAGC
AGTCAGCTGCATACCTCCAACCCAAATTTGGTACTTCGAAGTATACCAAC
TGACCCGCCCCATCCCAACCCTTACAACCCCAACACTTAACCTAGCCCCA
ATCTTGGCCGATCCGATGGCCCAAAGGTGCTGCGAAACCCGGTCATGAGT
CAAGCGGACTTTCTTCTCACACATCACTGTACACACGCATGCATATGGGT
GAAAACGTACCACCACTGCGCCAACATCAAAAGCTTGAGAGGTGCCTTTC
CCTAGCGGGTGCAGTCATCCATCCACACATATTGCCGTGCGTTGCATGTT
GATGGAAAACTCTTGATGATTTTGGGTCGACGGGATCATTCGCCATAGTA
AGGGTGCATGCGGATCAAATTCTGAATTCCCAACTACTGGCCCGCCCCAG
GGAGGGCCAGCTTTCGATAATTTTCAATTTGGAGGCACTAAAAGTGGTCC
AGGGGATGCCGGTGACGACGGTGCCGTCCTCTGCCCATCCCATCGATTCG
CCCCCCGCTTTGACAACAAATGGGTTGGGCACCCCACCCCTTCCGTAGGC
GATTTGCGACCGCTGCGACGAAGCGTGTGGTATTGCCCTGTCCATCCGCC
GTCATAAGTGGGGGTGAACGTTCCCATCTGCAGGAGGCCCCCTTCAACGC
TAACACATCAGAACACCCGACGCAGCTCGTGAACCGGTCACGTGCACGAA
TTTCACACGTCAACCGTTTGCTCTCCGGTCCGTGTTTGGTAATTTCCTCC
ACAAGCTGTGGCCCTGATAAGCGGGGGCGCTCGCGCTAGCTTTGCTTGCT
TTGGCCTGCGTTCTTATTGCTGGTAGGAGTTACAAAGGCAGACCGCAAGC
TACCTTCTTGCACACGCCCTGATACCCCTTCTGCACCTACGGCGCCTCCT
TTCTGTCGTTGTTCTATACCATTCGATCGCTCAGCAAATCCGGTCGCCAC
CGGGAGAGCGACCGGGAGAGCGACCGGCTGCACCGCCCAGCGATAAGAGG
GACTCCGCCGCCGTCGCCGCTGCCGCCGCCGGCGGCGGCAGGGGAGGCTT
GAACCGCAGCAGCTCCGCCGTTTCGAACACCTCAGCCGTCTCGGTGGTGT
CGGTGGCGTATGGCCAGGTGGCGGCACTCACGGCGACGGGAGCGGGGTCG
CCGGCGGCAATTGCGGCGCCCGCGGTCGCTGCGCTGCGGCAGCTCTCCGT
GGCCGTGAGGGCGGCGAGGATCTGCAGGCGGCCGCTGGATTCCCTCCTGG
AGCGCGGCGATGACGCGGTGAGAGGAGCAACTTTTCGTCCATTGCCAGAG
GCAGAGGGTCGATTTGCTTATTCGTGCGCGCGTCTTAGTTTTTGCAGGCT
TCGTTTTGTCGAATTCCTAGCCGTGTTCACCCAGTCATCCATCAACCTCA
TGCAGCAGAAGCACGGTAACGCAAGGTGTGAGGGCACTACGCCACTTTGC
TCGGGGCTCAACCTTTCTGTCGAAGCAGGGCGCGCGCGAAATTGGCCTGG
ACCCCCTCCCCAAGCCCCCCTATCCTCCAACTCCCTTTGTCCACCCCTTC
CCCTGCCGCTGCCCCCTCCCGTCACACTCTCAAGGTCGAGATGCTTGTGC
AGGCCTGCCAGCCGAAGTCCGCGCCGACACCGCCGGCGTCGCCGTCCGGC
ATATTCGCGAGCGCCGGGGCAAGGAGTGAGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:3725694..3729076+

>mRNA_P-fluviatile_contig2.4060.1 ID=mRNA_P-fluviatile_contig2.4060.1|Name=mRNA_P-fluviatile_contig2.4060.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1470bp|location=Sequence derived from alignment at P-fluviatile_contig2:3725694..3729076+ (Porterinema fluviatile SAG_2381)
ATGGGCTGCACCCAAAGCTGTGAGCGCAGCGGAGGGGGCAATGGTGTTGG
TGCGGTGGTCAAGGGAGAGAAAGAAGCCGGGCATCGCCAGAAGCACCAGC
ACGCCTTCCCTGTGCAAGAAGACGAGATGAAGCTCCCAAGCCGGCCTCAG
CAGCAAGATGCTCCCTCCGCTCTCCCCGCCGTGAATTACGGTAGCCTGGC
GGAGGAGAGGATGTCGCTGTCGCGAAGGATCCCTTCATCGTCATCTGCAG
CAGCAGCAGTAGCAGCAGCGCCAGGGAAGGGCGATGGTCCCACGGGCGCC
CAGATGGGCTGCACCCAAAGCTGTGAGCGCAGCGGAGGGGGCAATGGTGT
TGGTGCGGTGGTCAAGGGAGAGAAAGAAGCCGGGCATCGCCAGAAGCACC
AGCACGCCTTCCCTGTGCAAGAAGACGAGATGAAGCTCCCAAGCCGGCCT
CAGCAGCAAGATGCTCCCTCCGCTCTCCCCGCCGTGAATTACGGTAGCCT
GGCGGAGGAGAGGATGTCGCTGTCGCGAAGGATCCCTTCATCGTCATCTG
CAGCAGCAGCAGTAGCAGCAGCGCCAGGGAAGGGCGATGGTCCCACGGGC
GCCCAGCAAATCCGGTCGCCACCGGGAGAGCGACCGGGAGAGCGACCGGC
TGCACCGCCCAGCGATAAGAGGGACTCCGCCGCCGTCGCCGCTGCCGCCG
CCGGCGGCGGCAGGGGAGGCTTGAACCGCAGCAGCTCCGCCGTTTCGAAC
ACCTCAGCCGTCTCGGTGGTGTCGGTGGCGTATGGCCAGGTGGCGGCACT
CACGGCGACGGGAGCGGGGTCGCCGGCGGCAATTGCGGCGCCCGCGGTCG
CTGCGCTGCGGCAGCTCTCCGTGGCCGTGAGGGCGGCGAGGATCTGCAGG
CGGCCGCTGGATTCCCTCCTGGAGCGCGGCGATGACGCGCAAATCCGGTC
GCCACCGGGAGAGCGACCGGGAGAGCGACCGGCTGCACCGCCCAGCGATA
AGAGGGACTCCGCCGCCGTCGCCGCTGCCGCCGCCGGCGGCGGCAGGGGA
GGCTTGAACCGCAGCAGCTCCGCCGTTTCGAACACCTCAGCCGTCTCGGT
GGTGTCGGTGGCGTATGGCCAGGTGGCGGCACTCACGGCGACGGGAGCGG
GGTCGCCGGCGGCAATTGCGGCGCCCGCGGTCGCTGCGCTGCGGCAGCTC
TCCGTGGCCGTGAGGGCGGCGAGGATCTGCAGGCGGCCGCTGGATTCCCT
CCTGGAGCGCGGCGATGACGCGGTCGAGATGCTTGTGCAGGCCTGCCAGC
CGAAGTCCGCGCCGACACCGCCGGCGTCGCCGTCCGGCATATTCGCGAGC
GCCGGGGCAAGGAGTGAGGCCGTCGAGATGCTTGTGCAGGCCTGCCAGCC
GAAGTCCGCGCCGACACCGCCGGCGTCGCCGTCCGGCATATTCGCGAGCG
CCGGGGCAAGGAGTGAGGCC
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