mRNA_P-fluviatile_contig2.3953.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3953.1
Unique NamemRNA_P-fluviatile_contig2.3953.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig2.3953.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.940e-5
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  245 TAGGVV*--NPGQAPKKGRPKKDGKEGAGNPAGQKGKS 352
            TAGG     N GQAPKKGRPK+DGKEGAGNPAGQKGKS
Sbjct:  474 TAGGTEGPKNLGQAPKKGRPKEDGKEGAGNPAGQKGKS 511
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXC0_9PHAE1.940e-581.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:2691636..2692454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3953.1prot_P-fluviatile_contig2.3953.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 2691689..2692454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.7760973-UTR-P-fluviatile_contig2:2691635..26916881622815816.7760973-UTR-P-fluviatile_contig2:2691635..2691688Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 2691636..2691688 -
1693563421.8296201-UTR-P-fluviatile_contig2:2691635..26916881693563421.8296201-UTR-P-fluviatile_contig2:2691635..2691688Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 2691636..2691688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.7936037-CDS-P-fluviatile_contig2:2691688..26917871622815816.7936037-CDS-P-fluviatile_contig2:2691688..2691787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2691689..2691787 -
1693563421.8398192-CDS-P-fluviatile_contig2:2691688..26917871693563421.8398192-CDS-P-fluviatile_contig2:2691688..2691787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2691689..2691787 -
1622815816.8068163-CDS-P-fluviatile_contig2:2691982..26921011622815816.8068163-CDS-P-fluviatile_contig2:2691982..2692101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2691983..2692101 -
1693563422.1237142-CDS-P-fluviatile_contig2:2691982..26921011693563422.1237142-CDS-P-fluviatile_contig2:2691982..2692101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2691983..2692101 -
1622815816.818026-CDS-P-fluviatile_contig2:2692372..26924541622815816.818026-CDS-P-fluviatile_contig2:2692372..2692454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2692373..2692454 -
1693563422.1388607-CDS-P-fluviatile_contig2:2692372..26924541693563422.1388607-CDS-P-fluviatile_contig2:2692372..2692454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 2692373..2692454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3953.1

>prot_P-fluviatile_contig2.3953.1 ID=prot_P-fluviatile_contig2.3953.1|Name=mRNA_P-fluviatile_contig2.3953.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=100bp
PIEPGHARLCCCDVELSRDTSYSGNGADVLQLHDSTAVCSPSRLPSTHKH
RYERLERARTAYSSGQQTHRLRSGGTTAGGDHSRWGSLESWASTQERET*
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mRNA from alignment at P-fluviatile_contig2:2691636..2692454-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3953.1 ID=mRNA_P-fluviatile_contig2.3953.1|Name=mRNA_P-fluviatile_contig2.3953.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=819bp|location=Sequence derived from alignment at P-fluviatile_contig2:2691636..2692454- (Porterinema fluviatile SAG_2381)
CCAATCGAGCCAGGACACGCAAGGCTGTGTTGCTGTGATGTAGAGCTATC
GCGAGATACCTCGTACAGCGGAAACGGTGCAGGTTTGGTGCAGCCATGGC
TGATGGGCAAAGTATATCTGTTGTCCCAACCTGCCCCCCGGGGGGGATTA
GTGTCTGAATCCCCCCCCGTCTGTATCTCCGCCCACAGGGCACCAATCGA
CTGACGAACACCGGTAGAAGTGTGTGAAACATGCGCGTACAGTGCATAGC
AGCGGGCAGCAGGGGAGGCGACCAGCACATCAAGTATTCCTGCCCACAGT
TTTACACGCACCCAATGGGAACCGAACGCTGCCTTCTTCTCGTCTTGAGG
CAGACGTCCTCCAGCTACACGATTCCACTGCTGTATGTAGCCCTTCAAGG
CTTCCGTCGACACACAAACACCGGTACGAGCGTCTGGAACGTGCACGTAC
AGCATACAGCAGCGGGCAGCAGGTGAGGCGACCAGCACATAAAAAGCATT
CCTGCCCACAGCTTTACAGTAGAAACCGAACTTCGCCTTCTCACTGGTGG
GGCAAAAGCCTTGCTTACCCCTCCCCAGCGGTATGTTAATACACAATACT
TCAGTCGACACAGGACATGATCAAATGTGTTGCTTCGCTGTAGGGCTACC
GTATGACCCATCGTTAGACCCACCGGTTACGTTCAGGTGGTACCACGGCC
GGTGGGGACCACAGCCGGTGGGGTAGTTTAGAATCCTGGGCAAGCACCCA
AGAAAGGGAGACCTAAGAAGGACGGCAAAGAGGGAGCTGGCAACCCTGCG
GGCCAGAAAGGAAAATCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:2691636..2692454-

>mRNA_P-fluviatile_contig2.3953.1 ID=mRNA_P-fluviatile_contig2.3953.1|Name=mRNA_P-fluviatile_contig2.3953.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig2:2691636..2692454- (Porterinema fluviatile SAG_2381)
CCAATCGAGCCAGGACACGCAAGGCTGTGTTGCTGTGATGTAGAGCTATC
GCGAGATACCTCGTACAGCGGAAACGGTGCAGCCAATCGAGCCAGGACAC
GCAAGGCTGTGTTGCTGTGATGTAGAGCTATCGCGAGATACCTCGTACAG
CGGAAACGGTGCAGACGTCCTCCAGCTACACGATTCCACTGCTGTATGTA
GCCCTTCAAGGCTTCCGTCGACACACAAACACCGGTACGAGCGTCTGGAA
CGTGCACGTACAGCATACAGCAGCGGGCAGCAGACGTCCTCCAGCTACAC
GATTCCACTGCTGTATGTAGCCCTTCAAGGCTTCCGTCGACACACAAACA
CCGGTACGAGCGTCTGGAACGTGCACGTACAGCATACAGCAGCGGGCAGC
AGACCCACCGGTTACGTTCAGGTGGTACCACGGCCGGTGGGGACCACAGC
CGGTGGGGTAGTTTAGAATCCTGGGCAAGCACCCAAGAAAGGGAGACCTA
AACCCACCGGTTACGTTCAGGTGGTACCACGGCCGGTGGGGACCACAGCC
GGTGGGGTAGTTTAGAATCCTGGGCAAGCACCCAAGAAAGGGAGACCTAA
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