mRNA_P-fluviatile_contig2.3881.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig2.3881.1
Unique Name	mRNA_P-fluviatile_contig2.3881.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KNJ3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.840e-31
Identity = 77/145 (53.10%), Postives = 77/145 (53.10%), Query Frame = 3

Query:  153 MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQLS 392
            MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIR   ICPDASTGEHTHQ                                                                 SLASFLGHDRVPTDIHAEAVQTPAQLS
Sbjct:    1 MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIR---ICPDASTGEHTHQVNKSGRGVDCGRSPSLHMAKRANVNSAFLALSNGLPYRVTKYNRQTKMHEIVTVRPGDGCVRLMQSLASFLGHDRVPTDIHAEAVQTPAQLS 142

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KI50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI50_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.300e-22
Identity = 60/135 (44.44%), Postives = 66/135 (48.89%), Query Frame = 3

Query:  180 VEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 389
            V  FS++MGRTGSRPTIHS+LHAVEAIRLHG+CPDASTGEH HQ                                                                 SLASFLGH RVPTDIHA+A+QTPAQL
Sbjct:  210 VGAFSQMMGRTGSRPTIHSMLHAVEAIRLHGVCPDASTGEHAHQMNKSGKAVDCGRMPSLHMAKRANVNSALVALSNGLPYRITKYNRSSNAHEVVSVKPGAGCVQLMQSLASFLGHARVPTDIHAKAIQTPAQL 344

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.410e-22
Identity = 60/135 (44.44%), Postives = 66/135 (48.89%), Query Frame = 3

Query:  180 VEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 389
            V  FS++MGRTGSRPTIHS+LHAVEAIRLHG+CPDASTGEH HQ                                                                 SLASFLGH RVPTDIHA+A+QTPAQL
Sbjct:  397 VGAFSQMMGRTGSRPTIHSMLHAVEAIRLHGVCPDASTGEHAHQMNKSGKAVDCGRMPSLHMAKRANVNLALVALSNGLPYRITKYNRSFNAHEAVSVKPGAGCVQLMQSLASFLGHARVPTDIHAKAIQTPAQL 531

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.500e-22
Identity = 61/135 (45.19%), Postives = 64/135 (47.41%), Query Frame = 3

Query:  180 VEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEHTHQ-----------------------------------------------------------------SLASFLGHDRVPTDIHAEAVQTPAQL 389
            VE FSK+MGRTGSRPTIHSILH VE IRLHG+CPDAST EHTHQ                                                                 SLAS +GHD VPTDIHAEAVQTPAQL
Sbjct:  963 VEAFSKIMGRTGSRPTIHSILHTVETIRLHGLCPDASTCEHTHQTNKSGRSVDCGRNPSKHMAQRANVNSALLALSNGLPYSVTRYNRQDRVHEIVSVRPGDGCVRLMKSLASLVGHDGVPTDIHAEAVQTPAQL 1097

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.410e-13
Identity = 52/144 (36.11%), Postives = 59/144 (40.97%), Query Frame = 3

Query:  153 MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEHTHQS-----------------------------------------------------------------LASFLGHDRVPTDIHAEAVQTPAQL 389
            + RDV    V V+SKV+GRTGSRPTIHS+LH  +AIR HGI PDAS+GE  HQ                                                                  LA  LGHDRVPTD+HA    T AQL
Sbjct:  665 LARDV----VGVYSKVLGRTGSRPTIHSVLHTSQAIRAHGIVPDASSGEFAHQQNKSGNKSDCGRNPPKHYIKRANTNAAMLALANGLEYRVRKYNFSKQEHEIVPVSPGAGCIRLMSLLARTLGHDRVPTDVHATETPTTAQL 804

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KRP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.630e-13
Identity = 48/106 (45.28%), Postives = 52/106 (49.06%), Query Frame = 3

Query:  201 MGRTGSRPTIHSILHAVEAIRLH--GICPDASTGEHTH-----------------------------------------QSLASFLGHDRVPTDIHAEAVQTPAQL 389
            MGRTGSRPTIHSILH VEA RLH  G  P     +  +                                         QSLASFLGH+RVPTDIHAEAVQTP+QL
Sbjct:    1 MGRTGSRPTIHSILHTVEATRLHDCGRNPSLHMAKRANLNSALLALSNGLPYRVARYNRRDRVHEIVSVHPDDGCVRIMQSLASFLGHNRVPTDIHAEAVQTPSQL 106

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.410e-7
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 3

Query:  153 MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIRLHG 272
            + RDV  F    +SKVMGRTGSRPTIHSILH  EAIR HG
Sbjct:  104 LARDVVGF----YSKVMGRTGSRPTIHSILHTTEAIRAHG 139

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BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.120e-7
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  309 QSLASFLGHDRVPTDIHAEAVQTPAQLS 392
            QSLASFLGH RVPTDIHAEAVQTPAQLS
Sbjct:  967 QSLASFLGHHRVPTDIHAEAVQTPAQLS 994

[Close]

BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KKX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.360e-7
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3

Query:  309 QSLASFLGHDRVPTDIHAEAVQTPAQL 389
            QSLASFLGH+RVPTDIHAEAVQTP+QL
Sbjct:   48 QSLASFLGHNRVPTDIHAEAVQTPSQL 74

[Close]

BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.100e-7
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 3

Query:  180 VEVFSKVMGRTGSRPTIHSILHAVEAIRLHG 272
            V  F K+MGRTGSRPTIHSILH VEAIRLHG
Sbjct:  222 VGAFFKIMGRTGSRPTIHSILHTVEAIRLHG 252

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig2.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5KNJ3_9PHAE	5.840e-31	53.10	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KI50_9PHAE	2.300e-22	44.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLQ7_9PHAE	2.410e-22	44.44	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9M0_9PHAE	2.500e-22	45.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9E1_9PHAE	1.410e-13	36.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRP1_9PHAE	3.630e-13	45.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LH37_ECTSI	2.410e-7	70.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0J4_9PHAE	4.120e-7	96.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKX1_9PHAE	6.360e-7	92.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXT2_9PHAE	9.100e-7	83.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig2	contig	P-fluviatile_contig2:1942620..1943474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	392
Cds size	240
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig2.3881.1	prot_P-fluviatile_contig2.3881.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig2 1942772..1943474 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815847.236836-UTR-P-fluviatile_contig2:1942619..1942771	1622815847.236836-UTR-P-fluviatile_contig2:1942619..1942771	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig2 1942620..1942771 +
1693563520.4755483-UTR-P-fluviatile_contig2:1942619..1942771	1693563520.4755483-UTR-P-fluviatile_contig2:1942619..1942771	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig2 1942620..1942771 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815847.2468383-CDS-P-fluviatile_contig2:1942771..1942889	1622815847.2468383-CDS-P-fluviatile_contig2:1942771..1942889	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1942772..1942889 +
1693563520.4936936-CDS-P-fluviatile_contig2:1942771..1942889	1693563520.4936936-CDS-P-fluviatile_contig2:1942771..1942889	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1942772..1942889 +
1622815847.25885-CDS-P-fluviatile_contig2:1943157..1943198	1622815847.25885-CDS-P-fluviatile_contig2:1943157..1943198	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1943158..1943198 +
1693563520.5130446-CDS-P-fluviatile_contig2:1943157..1943198	1693563520.5130446-CDS-P-fluviatile_contig2:1943157..1943198	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1943158..1943198 +
1622815847.2694192-CDS-P-fluviatile_contig2:1943393..1943474	1622815847.2694192-CDS-P-fluviatile_contig2:1943393..1943474	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1943394..1943474 +
1693563520.5253518-CDS-P-fluviatile_contig2:1943393..1943474	1693563520.5253518-CDS-P-fluviatile_contig2:1943393..1943474	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig2 1943394..1943474 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig2:1942620..1943474+
coding sequence from alignment at P-fluviatile_contig2:1942620..1943474+

protein sequence of mRNA_P-fluviatile_contig2.3881.1

>prot_P-fluviatile_contig2.3881.1 ID=prot_P-fluviatile_contig2.3881.1|Name=mRNA_P-fluviatile_contig2.3881.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
MTRDVFAFQVEVFSKVMGRTGSRPTIHSILHAVEAIRLHGICPDASTGEH
THQSLASFLGHDRVPTDIHAEAVQTPAQLS

mRNA from alignment at P-fluviatile_contig2:1942620..1943474+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig2.3881.1 ID=mRNA_P-fluviatile_contig2.3881.1|Name=mRNA_P-fluviatile_contig2.3881.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=855bp|location=Sequence derived from alignment at P-fluviatile_contig2:1942620..1943474+ (Porterinema fluviatile SAG_2381)
GTGGCCCAAACAAAAAAAAAACAAATGCATACAGCAGTAAAAGTTCATGA
CAACACAATACAGGACACTTTTCATCCTCACCAGCGTTCAGACTTTTTAC
AAAAGGTTTTCTCACCTCATGCTCCAGAGAAAGTAAGGAGAATGGCAAGC
AAATGACTCGTGACGTTTTCGCCTTTCAGGTGGAAGTCTTTTCCAAAGTA
ATGGGGAGGACGGGATCGCGGCCCACCATACACTCCATCCTACATGCGGT
AGAGGCGATTCGTCTGCACGGTGAGAGCGTTTCGAATGTGGGTTGTGGAT
CGTGGGTTAGGGTTGGCCTCGTTGAACGCCATTCGCTGGATCCTTGCAGC
TAAGAACACCGCCGACAGACACGATGGGCATTGCGGGGGGAGGAAGAGGG
GGGTGCGCCACTCACCCACCACTCAACCAAGCATTTTGATAGTGCTTCAC
CGTCCATGTTTATCTGAAAAATGCACTCACGCCGAGCTCGTCACGTGACC
TCTCGCTGCCTGCATCACACGTTGAACGAAACGAACAGGAATATGTCCGG
ACGCCAGCACGGGTGAACACACCCACCAGGTGAACAAGTCTGGAAGGGGT
GTGGATTGCGGTAGGAGCCCTTCACTGCACATGGTTAAGCGGGCGAACGT
CAATAGCGCATTCTTGGCGTTATCCAACAAGCTGTCGTACAGAGTCGCCA
AGTACAACCGACAGACAAAAATGCATGAGATCGTCACCGTTCGACCTTGT
GATGGCTGTGTGCGGCTCATGCAGTCGCTGGCGAGCTTCCTCGGCCATGA
CCGCGTGCCCACAGACATTCACGCCGAGGCGGTTCAGACGCCAGCACAGC
TTAGC

Coding sequence (CDS) from alignment at P-fluviatile_contig2:1942620..1943474+

>mRNA_P-fluviatile_contig2.3881.1 ID=mRNA_P-fluviatile_contig2.3881.1|Name=mRNA_P-fluviatile_contig2.3881.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig2:1942620..1943474+ (Porterinema fluviatile SAG_2381)
ATGACTCGTGACGTTTTCGCCTTTCAGGTGGAAGTCTTTTCCAAAGTAAT
GGGGAGGACGGGATCGCGGCCCACCATACACTCCATCCTACATGCGGTAG
AGGCGATTCGTCTGCACGATGACTCGTGACGTTTTCGCCTTTCAGGTGGA
AGTCTTTTCCAAAGTAATGGGGAGGACGGGATCGCGGCCCACCATACACT
CCATCCTACATGCGGTAGAGGCGATTCGTCTGCACGGAATATGTCCGGAC
GCCAGCACGGGTGAACACACCCACCAGGAATATGTCCGGACGCCAGCACG
GGTGAACACACCCACCAGTCGCTGGCGAGCTTCCTCGGCCATGACCGCGT
GCCCACAGACATTCACGCCGAGGCGGTTCAGACGCCAGCACAGCTTAGCT
CGCTGGCGAGCTTCCTCGGCCATGACCGCGTGCCCACAGACATTCACGCC
GAGGCGGTTCAGACGCCAGCACAGCTTAGC