mRNA_P-fluviatile_contig2.3871.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3871.1
Unique NamemRNA_P-fluviatile_contig2.3871.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.210e-111
Identity = 187/232 (80.60%), Postives = 210/232 (90.52%), Query Frame = 3
Query:   45 LSLSRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREAETLR 740
            +  +RRDGR+ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK++RME+++GAT+DVSFKPESG  +SA  +AE+EALLRRSLEEVVLRSRYPR VVSV+IQVI DDG+V+SAALNAATMAL+NAGVEMTGMALSVTCCIT   +GRSVLLDPCKAEE +AAA A VATL+ GGGVLSC A G MS+EEYFACCEAA+ GT AVRSFVR+S EQKV REAET+R
Sbjct:    1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSA--DAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.500e-48
Identity = 114/239 (47.70%), Postives = 150/239 (62.76%), Query Frame = 3
Query:   63 DGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDAST------------GRSVL-LDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREAETLR 740
            DGR  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + EK D A ++VS++ + G  TSA  +AE E  +RR+LEE V  +RYPR+V+SVV+QV+ DDGSV+SAA+NA  MALV+AGVEM GM ++ T C + + +            G S L LDP  +EE    A   +A L    G+L+ +  G +  EE FA  EAA +   AV  ++R +VE KV R+   L+
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSA--DAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANLQ 244          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 166 bits (421), Expect = 1.450e-45
Identity = 100/222 (45.05%), Postives = 143/222 (64.41%), Query Frame = 3
Query:   57 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKR 722
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R EKA GAT++V+FK E G  +  A + E E +LR + E +++   +PRAVVS+ +QV+ DDG++++ A+NA  +AL++AGV M  +  ++TC I +      + LDP ++E   AAA    A      G+L+   +G++S E+YFAC E   +   +V +FVR+S E K  +
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPS--ARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSILEDG---QLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.390e-45
Identity = 102/225 (45.33%), Postives = 141/225 (62.67%), Query Frame = 3
Query:   57 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREAE 731
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R EK D AT++V FK E G  T  A + E EA+LR++ E +V    YPRAV+S+ +QV+ DDGS+++ A+NA  +AL++AG+ M  +  ++TC I +      + LDP + E   AAA    A      G+L+    G++S  +YFAC E   +   +V SFVR+S E K ++  E
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPT--ARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSILEDG---QLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.160e-44
Identity = 102/229 (44.54%), Postives = 149/229 (65.07%), Query Frame = 3
Query:   39 MSLSLSRR-DGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKR 722
            M+ S  RR DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R EK   AT++V FKPE G   ++A + E E +LR++ E ++L   +PRAV+SV +QV+ DDG++++ A+NA  +AL++AGV M G+  ++TC I +      + LDP  +E   AAA    A+     GVL+   +G+++  +YFAC E   +G  +V +FVR++ E K ++
Sbjct:    1 MASSEDRREDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGA--ASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTILEDG---QLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETKFQK 224          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 5.640e-42
Identity = 98/224 (43.75%), Postives = 139/224 (62.05%), Query Frame = 3
Query:   57 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREA 728
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R EK D ATV+V FK + G  T  A + E EA+L+++ + +V    YPRAV+S+ +QV+ DDGS+++ A+NA  +AL++AG+ M  +  ++TC I D      + LDP   E   A A    A      G+L+    GL++  +YFA  E   +   +V SFVR++ E K ++ A
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPT--ARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSILDDG---QLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.380e-40
Identity = 101/223 (45.29%), Postives = 140/223 (62.78%), Query Frame = 3
Query:   57 RRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGG--GVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVK 719
            R DGR   +IRPL+ EQ +LNRADGSARF  G +SVLA+V GPA AK  R EK   A+++V+FK E G  T  A + E EA+LR++ E ++    +PRAV+SV +QV+ DDGS++S A+NA  +AL++AG+ M  +  +VTC I D        LD     EGEAA +A+V +   G   G+L+    G++S   YFAC E   +   +V SFVR+S E K +
Sbjct:    9 REDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPT--ARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSILDDG---QFCLDS-SLTEGEAA-VASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETKFR 224          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.370e-38
Identity = 95/228 (41.67%), Postives = 141/228 (61.84%), Query Frame = 3
Query:   45 LSLSRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREA 728
            ++  R DGR  N++RPLA+EQG L RADGSAR   G+++VL AVYGP  AK+ R EK   A +DV FK E G +TS   E E E ++R++ E VV+   +PRAV+S+V+Q       ++S A+NA ++AL++AGV MT +  S TC +    T   + LDP +AEE  + ++   A  +T   VL+    GL++ E+YFAC EA  +   +V +F R+  ++K +  A
Sbjct:    1 MATKRHDGRAGNELRPLASEQGALFRADGSARVAHGSSAVLVAVYGPGQAKSRRSEKLHRAALDVCFKLEKGVLTSK--EKEYEQVIRQTFEPVVVTENFPRAVISIVVQ------HLLSVAINAVSLALLDAGVPMTSVVTSATCGLLPDGT---LFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKKYEANA 217          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.470e-38
Identity = 94/224 (41.96%), Postives = 141/224 (62.95%), Query Frame = 3
Query:   45 LSLSRR-DGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQK 713
            +S+ +R DGR   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E  + AT+DV FK E G  T  A + E E +LR++ E ++L   +PR V+S+ +QV+ DDGS+++ ++NA  +AL++AG+ M  +  ++TC + + S    + +DP   E   A A    A       +L+   +G+++ E+YFAC E   +   +V +FVR+S E K
Sbjct:  499 ISMDKREDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVAT--ARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSVLEDS---QLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717          
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Match: K3WUR4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUR4_GLOUD)

HSP 1 Score: 145 bits (367), Expect = 1.060e-37
Identity = 95/230 (41.30%), Postives = 142/230 (61.74%), Query Frame = 3
Query:   39 MSLSLSRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRSRYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCITDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEYFACCEAAAQGTAAVRSFVRMSVEQKVKREA 728
            M+    R DGR  N++RP A++QG L RADGSAR   GN++VLAAVYGP  AK  R E  + AT+DV FK E G +TS   E E E ++R++ E V++   +PRAV+S+V+Q       ++S A+NA ++AL++AGV M  +  S TC +       ++ LDP  AEE  + ++   A  +T  GVL+    GL++ E+YFAC EA  + + +V +F+R+  ++K   EA
Sbjct:    1 MTPLTKRHDGRAGNELRPFASDQGALFRADGSARMSHGNSTVLAAVYGPGQAKNRRNEHIEKATLDVCFKLEKGQLTSK--EKEYEQIIRQTFEPVIVADDFPRAVISIVVQ------HLLSVAINAVSLALLDAGVPMLSIVTSATCGLLPDG---NLFLDPSLAEEELSTSLVTTACSSTNDGVLTSLTKGLLTEEQYFACSEACQRASESVHAFLRIVQQKKYPIEA 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI1.210e-11180.60RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA1.500e-4847.70Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A067CJ13_SAPPC1.450e-4545.05Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KL27_9STRA4.390e-4545.33Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZII6_9STRA3.160e-4444.54Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TBK6_9STRA5.640e-4243.75Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A6G0WBP6_9STRA4.380e-4045.29Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6XHQ5_9STRA1.370e-3841.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9ZVY3_9STRA8.470e-3841.96U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
K3WUR4_GLOUD1.060e-3741.30Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1867784..1870456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue4.8e-91
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
Exons2
Model size1293
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3871.1prot_P-fluviatile_contig2.3871.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1867822..1869906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.49473-UTR-P-fluviatile_contig2:1867783..18678211622815846.49473-UTR-P-fluviatile_contig2:1867783..1867821Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1867784..1867821 +
1693563510.5213673-UTR-P-fluviatile_contig2:1867783..18678211693563510.5213673-UTR-P-fluviatile_contig2:1867783..1867821Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1867784..1867821 +
1622815846.5371735-UTR-P-fluviatile_contig2:1869906..18704561622815846.5371735-UTR-P-fluviatile_contig2:1869906..1870456Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1869907..1870456 +
1693563513.8716154-UTR-P-fluviatile_contig2:1869906..18704561693563513.8716154-UTR-P-fluviatile_contig2:1869906..1870456Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1869907..1870456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.5150585-CDS-P-fluviatile_contig2:1867821..18681571622815846.5150585-CDS-P-fluviatile_contig2:1867821..1868157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1867822..1868157 +
1693563510.5347862-CDS-P-fluviatile_contig2:1867821..18681571693563510.5347862-CDS-P-fluviatile_contig2:1867821..1868157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1867822..1868157 +
1622815846.5276124-CDS-P-fluviatile_contig2:1869537..18699061622815846.5276124-CDS-P-fluviatile_contig2:1869537..1869906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1869538..1869906 +
1693563510.5467553-CDS-P-fluviatile_contig2:1869537..18699061693563510.5467553-CDS-P-fluviatile_contig2:1869537..1869906Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1869538..1869906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3871.1

>prot_P-fluviatile_contig2.3871.1 ID=prot_P-fluviatile_contig2.3871.1|Name=mRNA_P-fluviatile_contig2.3871.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=235bp
MSLSLSRRDGRKANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPA
PAKAVRMEKADGATVDVSFKPESGGMTSAAAEAETEALLRRSLEEVVLRS
RYPRAVVSVVIQVIADDGSVVSAALNAATMALVNAGVEMTGMALSVTCCI
TDASTGRSVLLDPCKAEEGEAAAIAAVATLTTGGGVLSCRAAGLMSREEY
FACCEAAAQGTAAVRSFVRMSVEQKVKREAETLR*
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mRNA from alignment at P-fluviatile_contig2:1867784..1870456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3871.1 ID=mRNA_P-fluviatile_contig2.3871.1|Name=mRNA_P-fluviatile_contig2.3871.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2673bp|location=Sequence derived from alignment at P-fluviatile_contig2:1867784..1870456+ (Porterinema fluviatile SAG_2381)
AGGACAAGTACAAGACACACGTACACACACAAGAACACATGTCGTTGTCG CTGAGTCGGAGAGACGGCCGGAAAGCCAACCAGATCCGGCCCCTGGCCGC TGAGCAGGGCATCCTCAACCGCGCGGACGGCTCCGCGCGCTTCGTGCAGG GCAACACCTCGGTTCTAGCGGCGGTCTACGGCCCGGCCCCGGCCAAGGCG GTGCGGATGGAGAAGGCCGACGGTGCGACGGTAGACGTAAGCTTCAAGCC GGAGAGCGGCGGCATGACCTCGGCGGCGGCCGAGGCCGAGACGGAGGCGC TGCTGCGGAGGTCGCTCGAGGAGGTGGTGCTGCGATCGAGATATCCCAGG GCCGTGGTGTCTGTTGTCATCCAGGTGTGTTCGGTGGTGGGATGCCCATA CACGTTTATCCCCCTGTCGTGAAGCCGAGCGCGAGAAAAATGTATCATGA ATTGCAGACCAACATGGCAACGTCTGAGTCTACCCACATTATTCACCGAA ATAATCAGCACCACTACAGCAACTGATACTCCAATCCGTGGGTTTGCGTA CCCAGCCGAGTACCTTCAGATGCACTCGATGGAACGATCTTTTCGTCACC GGACACCCACGACGTCTGGCCGTTACCGTCTCAAGCATGGTGGTATTGAC ACCCTGATCTCGTTCTCAACCTCAACGAGGAATTGTTTCCCACCTAGCCA TACAAGTACGCCGATGGATGACTGCATGCAGCGGTGTACACAGCAACAAT CACAACGTCGAGGTTTGCGATGGACGATGAAGAGGGATCTCGATGTGAGG TCACTTTGCCTGGGTGAACACAACTCTGGCCCGCAGCTTTACTTAGCACC GGCACAAAAAACATACACGAAACGTAGGGATTTTAGCTGACCCAAGCCGT GGGTTCGGGAAACAATCGCGCGAGCGGGTAAAATAGAAATCACCCGCGCA TATGCGTGGAAGACACCTCCAGCAGCAAATTTTGCCAACGGCTGGGTGGT GTATCTCCTCCAATGCGGGAATAGGTCTAAGGGTATGCCCGAATTTCTCC TCGAATCCTCGCTACTGTTGTGGAGAAGTAGTTTTTGTAATCCGCTTGCG CGCGAAAGGTGAGGGTGTGCGTGTACTTGCACTCATTCCGGGCAGCTTGC TGTGGTCGTGGGCGGTGTAGAAGCTGAAAACCAAGTGGTTTGTTTCAGCT TCTACAGCAGTCGACCAGCTCCTCTGATACGTATGAGTTCCGGCGAGCCT CCCTCGTTCACTCTGTACTTCTGCTCGCCTACGCCCTGTCTTTTCAAGCT GGTTGACGAGAAAGCGTTGGTGGAGCTTTGCAGCAGCAAGGCAATCGGGA AAATTTCTACCCCACCGGCATCGGCGAGTTTCGTCAGCTCGCGTTTTGCT CTACAGGATGCTACTGTTCGAGGGTTAGCACTATTGATTAGTGATGGAGC GTCATGCTGGCTGCTTGACAATGTGCCTGACTTGCTCCGGAGGACCGCGA TGCTTTTGAATAATGCGTGTATGCAATGCTCTCCATACTTTCCTCCATCA CTTGCTGCCATACACCGCGAAATCAAGTTTTCACTGCCTGTCTCTCAATA CTGACTTTGTAAATACGCTCCGTTTCTGCCTTCCGAAATTCCCGCAATTC ACCGCGAGTCAAGTTTTTAACATTGAAGTGTGCACACGTCACACGCGCGA AATTGTTGTACTTCGTGTAACGCACAAAGGCAAAAAAAACACGCACAACA CCAGGTGATCGCCGACGATGGCTCCGTTGTCAGCGCCGCCCTCAATGCCG CGACCATGGCCCTCGTCAACGCCGGCGTCGAGATGACGGGCATGGCCCTC TCCGTGACCTGCTGCATCACCGACGCTTCCACCGGGAGGTCCGTCCTCCT AGACCCGTGCAAGGCCGAGGAGGGCGAGGCTGCCGCCATCGCCGCCGTGG CCACCCTGACGACCGGCGGCGGGGTCCTGTCCTGCCGCGCGGCGGGACTG ATGAGCCGGGAGGAGTACTTCGCGTGCTGCGAGGCGGCGGCTCAGGGAAC GGCGGCCGTCCGGTCCTTCGTCAGGATGTCGGTGGAGCAGAAGGTCAAGC GAGAGGCCGAGACTCTGAGATGACGACAATCGTCATTGTTGTTCGCGCAA TTTTTCTTTGTGGATACTTCTGTTCGTATGCGTTCAGATTGGTGGATTTA TTGTCCTGCGGTGCCATGTTAGACGGGTCTCCCCGCTTCGGGGAGTCTCA TTCCTCGTTTTCCGAACAGCGTTGGTCTCCACTGCACCGTAAACACAATA CTGAAACCGTACTCAATGGGTACATCTGCGATATCCGAACACTCTAGAGT TTTCCCCCAAGGGAATTGCACTCAGTGCAATGGCGGATGCGCCATTCGGG CTCCGCCTCTGGTGCTGAAGAAGCTGCTGGCGTGGCGCCAGCAGCACTGC AGGGAAAAGACCAGGAGGAGCGGATGGCGAGGTTTTAAGTACAGCTGTCG GACTTCGAGCGAGGATCGAAGAGCCTGGCGGCGTCTTGACAAACGTCGCC GGTAGGCGCATTTCGTGAGGATGGCCATCTGCGATGAACGAACAGCTACC CTTACAAGGGTCGGGAATCCTAAACTCCTGTCGAGGACGGAACCCTCCTT TTTTATATTTGCATGCTTTTTGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1867784..1870456+

>mRNA_P-fluviatile_contig2.3871.1 ID=mRNA_P-fluviatile_contig2.3871.1|Name=mRNA_P-fluviatile_contig2.3871.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1410bp|location=Sequence derived from alignment at P-fluviatile_contig2:1867784..1870456+ (Porterinema fluviatile SAG_2381)
ATGTCGTTGTCGCTGAGTCGGAGAGACGGCCGGAAAGCCAACCAGATCCG
GCCCCTGGCCGCTGAGCAGGGCATCCTCAACCGCGCGGACGGCTCCGCGC
GCTTCGTGCAGGGCAACACCTCGGTTCTAGCGGCGGTCTACGGCCCGGCC
CCGGCCAAGGCGGTGCGGATGGAGAAGGCCGACGGTGCGACGGTAGACGT
AAGCTTCAAGCCGGAGAGCGGCGGCATGACCTCGGCGGCGGCCGAGGCCG
AGACGGAGGCGCTGCTGCGGAGGTCGCTCGAGGAGGTGGTGCTGCGATCG
AGATATCCCAGGGCCGTGGTGTCTGTTGTCATCCAGATGTCGTTGTCGCT
GAGTCGGAGAGACGGCCGGAAAGCCAACCAGATCCGGCCCCTGGCCGCTG
AGCAGGGCATCCTCAACCGCGCGGACGGCTCCGCGCGCTTCGTGCAGGGC
AACACCTCGGTTCTAGCGGCGGTCTACGGCCCGGCCCCGGCCAAGGCGGT
GCGGATGGAGAAGGCCGACGGTGCGACGGTAGACGTAAGCTTCAAGCCGG
AGAGCGGCGGCATGACCTCGGCGGCGGCCGAGGCCGAGACGGAGGCGCTG
CTGCGGAGGTCGCTCGAGGAGGTGGTGCTGCGATCGAGATATCCCAGGGC
CGTGGTGTCTGTTGTCATCCAGGTGATCGCCGACGATGGCTCCGTTGTCA
GCGCCGCCCTCAATGCCGCGACCATGGCCCTCGTCAACGCCGGCGTCGAG
ATGACGGGCATGGCCCTCTCCGTGACCTGCTGCATCACCGACGCTTCCAC
CGGGAGGTCCGTCCTCCTAGACCCGTGCAAGGCCGAGGAGGGCGAGGCTG
CCGCCATCGCCGCCGTGGCCACCCTGACGACCGGCGGCGGGGTCCTGTCC
TGCCGCGCGGCGGGACTGATGAGCCGGGAGGAGTACTTCGCGTGCTGCGA
GGCGGCGGCTCAGGGAACGGCGGCCGTCCGGTCCTTCGTCAGGATGTCGG
TGGAGCAGAAGGTCAAGCGAGAGGCCGAGACTCTGAGATGAGTGATCGCC
GACGATGGCTCCGTTGTCAGCGCCGCCCTCAATGCCGCGACCATGGCCCT
CGTCAACGCCGGCGTCGAGATGACGGGCATGGCCCTCTCCGTGACCTGCT
GCATCACCGACGCTTCCACCGGGAGGTCCGTCCTCCTAGACCCGTGCAAG
GCCGAGGAGGGCGAGGCTGCCGCCATCGCCGCCGTGGCCACCCTGACGAC
CGGCGGCGGGGTCCTGTCCTGCCGCGCGGCGGGACTGATGAGCCGGGAGG
AGTACTTCGCGTGCTGCGAGGCGGCGGCTCAGGGAACGGCGGCCGTCCGG
TCCTTCGTCAGGATGTCGGTGGAGCAGAAGGTCAAGCGAGAGGCCGAGAC
TCTGAGATGA
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