mRNA_P-fluviatile_contig2.3833.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3833.1
Unique NamemRNA_P-fluviatile_contig2.3833.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1545865..1547532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size788
Cds size786
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.4575462-CDS-P-fluviatile_contig2:1545864..15461131622815816.4575462-CDS-P-fluviatile_contig2:1545864..1546113Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1545865..1546113 +
1693563420.0772414-CDS-P-fluviatile_contig2:1545864..15461131693563420.0772414-CDS-P-fluviatile_contig2:1545864..1546113Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1545865..1546113 +
1622815816.468634-CDS-P-fluviatile_contig2:1546995..15475321622815816.468634-CDS-P-fluviatile_contig2:1546995..1547532Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1546996..1547532 +
1693563420.0871036-CDS-P-fluviatile_contig2:1546995..15475321693563420.0871036-CDS-P-fluviatile_contig2:1546995..1547532Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1546996..1547532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3833.1prot_P-fluviatile_contig2.3833.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1545865..1547532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3833.1

>prot_P-fluviatile_contig2.3833.1 ID=prot_P-fluviatile_contig2.3833.1|Name=mRNA_P-fluviatile_contig2.3833.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=262bp
PTLPCYLVPTHTWTGAATPGMTENCGRASSLGKIGGRRPLRARRRLQHLG
THPAPCAATRPGAGVATMGGRMRSCWARSHRAESRSSGGGKGNVRRRKGT
RPGTLRGRLHRRLPTSGEVRFPLVLLKYSHYLHKDWLSFTVRVVKTPADT
TRFAPPYLETVQCPYVVSICLRGGRCAEQRCRICMSLSLSLEGFACCSAK
HSRVKGQRLSARRRRTISATWERSKQSAITVLLEVLNLWPWKTRGWTQMT
AYIYRPAPKMV*
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mRNA from alignment at P-fluviatile_contig2:1545865..1547532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3833.1 ID=mRNA_P-fluviatile_contig2.3833.1|Name=mRNA_P-fluviatile_contig2.3833.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1668bp|location=Sequence derived from alignment at P-fluviatile_contig2:1545865..1547532+ (Porterinema fluviatile SAG_2381)
CCAACCCTCCCCTGCTACCTTGTTCCAACACACACCTGGACCGGCGCGGC
TACTCCTGGGATGACCGAGAACTGCGGGCGCGCGTCGTCCCTCGGCAAGA
TCGGTGGAAGGCGTCCGCTCCGCGCTCGCCGTCGGCTTCAGCATCTCGGG
ACGCATCCGGCCCCGTGTGCGGCGACACGACCGGGGGCAGGCGTCGCCAC
GATGGGAGGACGGATGCGGAGCTGTTGGGCCCGCTCTCACCGAGCCGAGG
TGCGACCACGTGACCGCCTCATCGTCGCTGCCTTCAACGTGAAATTTTGA
TGGTTGAAGATCGAAGTTAAGGCGGAGCCGGAAGGAGTTCATCGCGGTGG
CTATTAATGCGACTTTCAGATGCTTGAAGTTGATGTTGACCTTGAAGTAC
CGCAGACGAAAGCAGCAACAGCAGCGGGAACAGTACAGAGTAGGGGCAGA
CACGCCACAAGGGAGAAGGGCTGCTACTACGGCGGCTGCTGCTGCATTGC
TACTGCTCGCCTTTAATCATGATGCTGTCTTAGTCGGGATAACGTATCAT
CGATTGATTTTACTTTTTTTCCGAAAGATTTTAATGTGGTGGCTTAGTTC
CATTACAATCCATTTCAGTGCGGATTGCTGGAAAGGTGCGGGGCGAAAGA
GAGGCAGTGGTGTGGCAGACAATCACTGCATATTCGCATCATATCTCTTC
GGTTTTCGCAGGAGAAACATCAGGGAACAACCCATCAGCCGACGTGTGCA
GTCCGATTTCTGTAAGCGCTACCGCTGGGGAGTCCGGACATGACGAAACT
TGACTTGCGGAACGCAAAATACGTGAACGACTCCTCCGAAATTCTAGGAC
GAATCTCGTGAATTAACCCATAGATGAAAAATGGACTCGTGCAAAGTCGA
GAAATTGTAGCCTCCTGTGTCTTGAAATAGCATTTTTTGGCTTGCTCTGG
CCTTTACTTGTGAGGAGAACTCGCACTGCCTGGTCCCGTCTCCTCTGTGG
AGCTGCTGTATTTGCGAGGTAGTGCAAAAACGGTCTCGGAACAATGGATA
ATGTGTCACAACGAAGTTCAGAAGATTTACATCGGCTGGAATCATGGCTT
CTGATTCCAGCTGCATGCGATGGCTATGCAGTCTAGGTCTAGCGGCGGCG
GGAAGGGAAACGTTCGCCGGCGGAAAGGGACACGGCCGGGTACACTCCGT
GGTCGTCTTCACCGCAGACTGCCTACCTCAGGCGAGGTGAGGTTCCCGCT
TGTCTTGCTCAAATATTCCCATTACTTGCACAAAGACTGGCTCTCCTTCA
CCGTGCGAGTAGTGAAAACCCCCGCTGACACGACACGCTTTGCACCACCA
TACCTCGAAACCGTCCAATGTCCGTACGTGGTATCGATTTGTCTTCGAGG
TGGCCGGTGCGCCGAGCAGAGATGTCGGATCTGTATGTCTCTCTCCCTCT
CTCTCGAAGGATTTGCATGTTGTAGCGCGAAACACTCTCGTGTCAAGGGG
CAGAGACTATCTGCCCGTCGAAGAAGAACAATATCTGCAACCTGGGAGCG
AAGTAAGCAATCCGCCATTACAGTACTTCTCGAGGTGCTGAATTTGTGGC
CCTGGAAGACGAGGGGGTGGACACAAATGACTGCATATATATACCGGCCA
GCACCCAAAATGGTTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1545865..1547532+

>mRNA_P-fluviatile_contig2.3833.1 ID=mRNA_P-fluviatile_contig2.3833.1|Name=mRNA_P-fluviatile_contig2.3833.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1572bp|location=Sequence derived from alignment at P-fluviatile_contig2:1545865..1547532+ (Porterinema fluviatile SAG_2381)
CCAACCCTCCCCTGCTACCTTGTTCCAACACACACCTGGACCGGCGCGGC
TACTCCTGGGATGACCGAGAACTGCGGGCGCGCGTCGTCCCTCGGCAAGA
TCGGTGGAAGGCGTCCGCTCCGCGCTCGCCGTCGGCTTCAGCATCTCGGG
ACGCATCCGGCCCCGTGTGCGGCGACACGACCGGGGGCAGGCGTCGCCAC
GATGGGAGGACGGATGCGGAGCTGTTGGGCCCGCTCTCACCGAGCCGAGC
CAACCCTCCCCTGCTACCTTGTTCCAACACACACCTGGACCGGCGCGGCT
ACTCCTGGGATGACCGAGAACTGCGGGCGCGCGTCGTCCCTCGGCAAGAT
CGGTGGAAGGCGTCCGCTCCGCGCTCGCCGTCGGCTTCAGCATCTCGGGA
CGCATCCGGCCCCGTGTGCGGCGACACGACCGGGGGCAGGCGTCGCCACG
ATGGGAGGACGGATGCGGAGCTGTTGGGCCCGCTCTCACCGAGCCGAGTC
TAGGTCTAGCGGCGGCGGGAAGGGAAACGTTCGCCGGCGGAAAGGGACAC
GGCCGGGTACACTCCGTGGTCGTCTTCACCGCAGACTGCCTACCTCAGGC
GAGGTGAGGTTCCCGCTTGTCTTGCTCAAATATTCCCATTACTTGCACAA
AGACTGGCTCTCCTTCACCGTGCGAGTAGTGAAAACCCCCGCTGACACGA
CACGCTTTGCACCACCATACCTCGAAACCGTCCAATGTCCGTACGTGGTA
TCGATTTGTCTTCGAGGTGGCCGGTGCGCCGAGCAGAGATGTCGGATCTG
TATGTCTCTCTCCCTCTCTCTCGAAGGATTTGCATGTTGTAGCGCGAAAC
ACTCTCGTGTCAAGGGGCAGAGACTATCTGCCCGTCGAAGAAGAACAATA
TCTGCAACCTGGGAGCGAAGTAAGCAATCCGCCATTACAGTACTTCTCGA
GGTGCTGAATTTGTGGCCCTGGAAGACGAGGGGGTGGACACAAATGACTG
CATATATATACCGGCCAGCACCCAAAATGGTTTGATCTAGGTCTAGCGGC
GGCGGGAAGGGAAACGTTCGCCGGCGGAAAGGGACACGGCCGGGTACACT
CCGTGGTCGTCTTCACCGCAGACTGCCTACCTCAGGCGAGGTGAGGTTCC
CGCTTGTCTTGCTCAAATATTCCCATTACTTGCACAAAGACTGGCTCTCC
TTCACCGTGCGAGTAGTGAAAACCCCCGCTGACACGACACGCTTTGCACC
ACCATACCTCGAAACCGTCCAATGTCCGTACGTGGTATCGATTTGTCTTC
GAGGTGGCCGGTGCGCCGAGCAGAGATGTCGGATCTGTATGTCTCTCTCC
CTCTCTCTCGAAGGATTTGCATGTTGTAGCGCGAAACACTCTCGTGTCAA
GGGGCAGAGACTATCTGCCCGTCGAAGAAGAACAATATCTGCAACCTGGG
AGCGAAGTAAGCAATCCGCCATTACAGTACTTCTCGAGGTGCTGAATTTG
TGGCCCTGGAAGACGAGGGGGTGGACACAAATGACTGCATATATATACCG
GCCAGCACCCAAAATGGTTTGA
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