mRNA_P-fluviatile_contig2.3784.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3784.1
Unique NamemRNA_P-fluviatile_contig2.3784.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1157733..1159557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNC2alpha class protein with histone-like transcription factor (NF-YC subunit) domain
Ec32 orthologEc-01_000530.1
Exons3
Model size1082
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3784.1prot_P-fluviatile_contig2.3784.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1157995..1159355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.541764-UTR-P-fluviatile_contig2:1157732..11579941622815837.541764-UTR-P-fluviatile_contig2:1157732..1157994Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1157733..1157994 +
1693563478.3395233-UTR-P-fluviatile_contig2:1157732..11579941693563478.3395233-UTR-P-fluviatile_contig2:1157732..1157994Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1157733..1157994 +
1622815837.5827737-UTR-P-fluviatile_contig2:1159355..11595571622815837.5827737-UTR-P-fluviatile_contig2:1159355..1159557Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1159356..1159557 +
1693563478.3941214-UTR-P-fluviatile_contig2:1159355..11595571693563478.3941214-UTR-P-fluviatile_contig2:1159355..1159557Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1159356..1159557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.5529463-CDS-P-fluviatile_contig2:1157994..11580261622815837.5529463-CDS-P-fluviatile_contig2:1157994..1158026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1157995..1158026 +
1693563478.3544617-CDS-P-fluviatile_contig2:1157994..11580261693563478.3544617-CDS-P-fluviatile_contig2:1157994..1158026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1157995..1158026 +
1622815837.56518-CDS-P-fluviatile_contig2:1158362..11585361622815837.56518-CDS-P-fluviatile_contig2:1158362..1158536Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1158363..1158536 +
1693563478.364446-CDS-P-fluviatile_contig2:1158362..11585361693563478.364446-CDS-P-fluviatile_contig2:1158362..1158536Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1158363..1158536 +
1622815837.5742462-CDS-P-fluviatile_contig2:1158943..11593551622815837.5742462-CDS-P-fluviatile_contig2:1158943..1159355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1158944..1159355 +
1693563478.3747652-CDS-P-fluviatile_contig2:1158943..11593551693563478.3747652-CDS-P-fluviatile_contig2:1158943..1159355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1158944..1159355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3784.1

>prot_P-fluviatile_contig2.3784.1 ID=prot_P-fluviatile_contig2.3784.1|Name=mRNA_P-fluviatile_contig2.3784.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=206bp
MGVDATSLIGMNFPTAATARCADAFLADLVTEAVERARAAGNRKPAKSGG
RNRSAASKAVAQQVIVEDVRKAVAEEERFDFLRPVLSPPEESGTPLGVGG
AKGKRKSSGQSSGGSGAGRGGARTVKARTDVEPPTSAGRGAASAPDPRSR
GGAKAVAEAGPGGLLALAGLDEEGRRRALLGTSDAKASAPFGLGDEDDDE
DYDNC*
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mRNA from alignment at P-fluviatile_contig2:1157733..1159557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3784.1 ID=mRNA_P-fluviatile_contig2.3784.1|Name=mRNA_P-fluviatile_contig2.3784.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1825bp|location=Sequence derived from alignment at P-fluviatile_contig2:1157733..1159557+ (Porterinema fluviatile SAG_2381)
GCGCAATGGTGGGTAACAAAAGCTGGAGAGTAGAGCACGATCGCCAGGCA
TCAACGGTACCTCCTCTTCCGTTGGTGAGATGAATCTTCAATGCCCATGA
GTGATATGTTCCTCATTTCCGGAGATGTACACAAAGACAGCAGCGCTGCC
AGTTACTGCAGCATGGAACACGACTGCAACGAACACAACAATCACCGCTC
TTTGACGTACATGGCAGGCACGGGTAAAATCTATCGCACAGAACGACGAA
TCGGTCGGCAAGATGGGTGTGGATGCGACATCATTGATAGGTATGTGTGT
ACCACAAGCGACGCTGACACCGATGTTGAACATGTTCGTTGTGGAGCAAT
GCTGCTTTGTATATCGTGTGTGAGAATCATGAGAGTGAGAAAGAAAAATA
GAGAGAGAGAGAGAGCAGGCTACACGGTGAACGGTAGGCATGTCAACGAG
GGCATTATGCATGCTATGTCGTCGTGTGCCGTTTCCAAGTGGCAGTGAGT
AGAAGGTTGCCGACGACGTGGGGTACACAAATGCCACTTGACAAGATGCC
TTACCTCCGCACGTTGCTTGTGCTGCCCATGAGCTGACCATCTGACGGCG
GGCCGGTCGTTTCCCTTGCTTATTCATTCCGAACTTTCCCACCGCGGCAA
CAGCCCGATGTGCGGACGCTTTCCTGGCCGATCTGGTTACGGAGGCCGTC
GAAAGAGCGAGGGCCGCGGGTAATCGGAAGCCGGCCAAGAGCGGCGGTAG
AAACCGTTCGGCGGCGTCGAAAGCCGTCGCTCAGCAGGTCATCGTGGAAG
ACGTGTAAGTGCTTTTAACGCAGAGCTGCAGCTTTTCGCGCACTGGATTT
GAGTTGTACTCTGCGTTCGGCGTACACTTGGACAATCTGCTCGCTGTGCT
TATGTCAGTAGTCCACTTCGCTGTTTGAAGTGCGCGAGAACGCGTTCCCC
AGCTTGCAGTTTTGCGCTCTTCATCATCCGGCATGGCGGGAAGTATTTGA
ACTTCGTTTTCTTCGGGGGGGAAATCACCGCTCTGCAGGTAACTTATTTT
ATTCGGGGCGTTTGTGCCAACAGACGATCCCCCTCCCAGCCCCTCACCCT
CTTCCCGCCTGTAAGTGGTCTCGGACGACGGCCTCGCGCACATCTGCCTA
AGCATCCCACACGCCGCCCTGTATCCTTGGGCGCCCTTAATCATTTTGAC
TTACCGCGCAGGCGAAAAGCTGTCGCTGAGGAGGAACGTTTCGATTTTTT
AAGACCAGTACTCAGCCCTCCCGAAGAGAGCGGCACTCCCCTCGGCGTCG
GCGGGGCTAAGGGGAAACGAAAAAGTAGCGGCCAGAGCTCGGGCGGATCC
GGAGCAGGACGCGGGGGCGCGCGAACGGTCAAGGCTCGAACGGACGTGGA
GCCCCCAACTTCGGCAGGGAGAGGTGCGGCTAGCGCACCGGATCCCAGAT
CACGAGGCGGCGCAAAAGCGGTGGCAGAAGCAGGGCCCGGCGGTTTGTTG
GCACTAGCGGGGCTGGATGAGGAAGGCCGGCGGCGAGCTTTGTTGGGGAC
ATCGGACGCCAAAGCTTCGGCTCCGTTTGGGCTGGGCGATGAGGACGACG
ATGAAGACTACGACAATTGTTGATGTGGTGGCGGAAACGGGTCGTAAATA
TCGAAGGCAGCGTAGTCATTTGAAAAAGCCTACAAGCTCGGGTGAAAGAC
CAAAATAACGCGGTCAGGCGCCGAAAGGACGCCTCGATATTTCACCTCGG
ACGTGCGACGGATGGATGCAAAGCAGCCTTTCTAGCAAAAATAATTTCAA
AAAGTCGTATTATCCTGTTTCCTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1157733..1159557+

>mRNA_P-fluviatile_contig2.3784.1 ID=mRNA_P-fluviatile_contig2.3784.1|Name=mRNA_P-fluviatile_contig2.3784.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1236bp|location=Sequence derived from alignment at P-fluviatile_contig2:1157733..1159557+ (Porterinema fluviatile SAG_2381)
ATGGGTGTGGATGCGACATCATTGATAGGTATATGGGTGTGGATGCGACA
TCATTGATAGGTATGAACTTTCCCACCGCGGCAACAGCCCGATGTGCGGA
CGCTTTCCTGGCCGATCTGGTTACGGAGGCCGTCGAAAGAGCGAGGGCCG
CGGGTAATCGGAAGCCGGCCAAGAGCGGCGGTAGAAACCGTTCGGCGGCG
TCGAAAGCCGTCGCTCAGCAGGTCATCGTGGAAGACGTGAACTTTCCCAC
CGCGGCAACAGCCCGATGTGCGGACGCTTTCCTGGCCGATCTGGTTACGG
AGGCCGTCGAAAGAGCGAGGGCCGCGGGTAATCGGAAGCCGGCCAAGAGC
GGCGGTAGAAACCGTTCGGCGGCGTCGAAAGCCGTCGCTCAGCAGGTCAT
CGTGGAAGACGTGCGAAAAGCTGTCGCTGAGGAGGAACGTTTCGATTTTT
TAAGACCAGTACTCAGCCCTCCCGAAGAGAGCGGCACTCCCCTCGGCGTC
GGCGGGGCTAAGGGGAAACGAAAAAGTAGCGGCCAGAGCTCGGGCGGATC
CGGAGCAGGACGCGGGGGCGCGCGAACGGTCAAGGCTCGAACGGACGTGG
AGCCCCCAACTTCGGCAGGGAGAGGTGCGGCTAGCGCACCGGATCCCAGA
TCACGAGGCGGCGCAAAAGCGGTGGCAGAAGCAGGGCCCGGCGGTTTGTT
GGCACTAGCGGGGCTGGATGAGGAAGGCCGGCGGCGAGCTTTGTTGGGGA
CATCGGACGCCAAAGCTTCGGCTCCGTTTGGGCTGGGCGATGAGGACGAC
GATGAAGACTACGACAATTGTTGAGCGAAAAGCTGTCGCTGAGGAGGAAC
GTTTCGATTTTTTAAGACCAGTACTCAGCCCTCCCGAAGAGAGCGGCACT
CCCCTCGGCGTCGGCGGGGCTAAGGGGAAACGAAAAAGTAGCGGCCAGAG
CTCGGGCGGATCCGGAGCAGGACGCGGGGGCGCGCGAACGGTCAAGGCTC
GAACGGACGTGGAGCCCCCAACTTCGGCAGGGAGAGGTGCGGCTAGCGCA
CCGGATCCCAGATCACGAGGCGGCGCAAAAGCGGTGGCAGAAGCAGGGCC
CGGCGGTTTGTTGGCACTAGCGGGGCTGGATGAGGAAGGCCGGCGGCGAG
CTTTGTTGGGGACATCGGACGCCAAAGCTTCGGCTCCGTTTGGGCTGGGC
GATGAGGACGACGATGAAGACTACGACAATTGTTGA
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