mRNA_P-fluviatile_contig2.3780.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3780.1
Unique NamemRNA_P-fluviatile_contig2.3780.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig2.3780.1 vs. uniprot
Match: A0A6H5JHB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB5_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.040e-52
Identity = 113/172 (65.70%), Postives = 128/172 (74.42%), Query Frame = 1 
Query:  232 SQGRELGRQLLGVARQAPAGSWGEAEGPGRQRQRTSLGPEGRFPASANAVXXXXXXXXXXXXD----APLAEGVRSKDGP--SWDGQVEETPDDVAAMEYLKWELHGKFMAFPGEHYHNLLASLASEIYHNRYPVEHGVDILHGVMREAGPEALKQKCARTLRRMNLPPRTT 729
            S GRELG++LLGVAR A +GSW  AE P RQ+Q+T               XXXXXXXXXXX      A       S+     SWDG+V+ETP+D+AAMEYLKWELHGKFMAFPGEHYHNLLA+LASEIYHNRYPVEHG+DILHGVMR+AGPEAL QKCA TL+RMNLP + T
Sbjct:  332 SVGRELGQRLLGVARNAASGSW--AEEPARQKQKTXXXXXXXXXXXXXXXXXXXXXXXXXXASVTGTASFVAAAESRPNVPMSWDGEVQETPEDLAAMEYLKWELHGKFMAFPGEHYHNLLANLASEIYHNRYPVEHGIDILHGVMRDAGPEAL-QKCAATLKRMNLPSKMT 500
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BLAST of mRNA_P-fluviatile_contig2.3780.1 vs. uniprot
Match: D7G949_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G949_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.440e-50
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:  442 RSKDGPSWDGQVEETPDDVAAMEYLKWELHGKFMAFPGEHYHNLLASLASEIYHNRYPVEHGVDILHGVMREAGPEALKQKCARTLRRMNLPPRTT 729
            R  +  SWDG+V+ETP+D+AAMEYLKWELHGKFMAFPGEHYHNLLA+LASEIYHNRYPVEHG+DILHGVMR+AGPEAL QKCA TL+RMNLPP+ T
Sbjct:   38 RPNEPTSWDGEVQETPEDLAAMEYLKWELHGKFMAFPGEHYHNLLANLASEIYHNRYPVEHGIDILHGVMRDAGPEAL-QKCAATLKRMNLPPKMT 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHB5_9PHAE3.040e-5265.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G949_ECTSI2.440e-5082.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1107537..1109233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011260.1
Exons3
Model size743
Cds size741
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3780.1prot_P-fluviatile_contig2.3780.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1107537..1109233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.8593183-CDS-P-fluviatile_contig2:1107536..11080681622815836.8593183-CDS-P-fluviatile_contig2:1107536..1108068Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1107537..1108068 +
1693563477.4970179-CDS-P-fluviatile_contig2:1107536..11080681693563477.4970179-CDS-P-fluviatile_contig2:1107536..1108068Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1107537..1108068 +
1622815836.8706295-CDS-P-fluviatile_contig2:1108296..11084421622815836.8706295-CDS-P-fluviatile_contig2:1108296..1108442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1108297..1108442 +
1693563477.5067117-CDS-P-fluviatile_contig2:1108296..11084421693563477.5067117-CDS-P-fluviatile_contig2:1108296..1108442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1108297..1108442 +
1622815836.8808475-CDS-P-fluviatile_contig2:1109170..11092331622815836.8808475-CDS-P-fluviatile_contig2:1109170..1109233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1109171..1109233 +
1693563477.5171473-CDS-P-fluviatile_contig2:1109170..11092331693563477.5171473-CDS-P-fluviatile_contig2:1109170..1109233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1109171..1109233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3780.1

>prot_P-fluviatile_contig2.3780.1 ID=prot_P-fluviatile_contig2.3780.1|Name=mRNA_P-fluviatile_contig2.3780.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
TATITTTTAVAADGAGNRLPLLTGPPGGPTSNGQAHSEATNGKGLLGAAL
GGTGPGGAALVAAAAPPAAVDPPFGRSSQGRELGRQLLGVARQAPAGSWG
EAEGPGRQRQRTSLGPEGRFPASANAVAAAAAHAAAAEADAPLAEGVRSK
DGPSWDGQVEETPDDVAAMEYLKWELHGKFMAFPGEHYHNLLASLASEIY
HNRYPVEHGVDILHGVMREAGPEALKQKCARTLRRMNLPPRTTAGV*
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mRNA from alignment at P-fluviatile_contig2:1107537..1109233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3780.1 ID=mRNA_P-fluviatile_contig2.3780.1|Name=mRNA_P-fluviatile_contig2.3780.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1697bp|location=Sequence derived from alignment at P-fluviatile_contig2:1107537..1109233+ (Porterinema fluviatile SAG_2381)
ACAGCAACAATTACAACAACAACGGCGGTCGCTGCTGACGGCGCAGGAAA
CCGACTTCCGCTCCTCACCGGCCCTCCGGGCGGGCCGACATCAAATGGTC
AGGCACACTCGGAAGCCACTAACGGCAAGGGTCTTCTCGGCGCCGCCCTC
GGGGGGACGGGTCCCGGGGGCGCTGCGTTGGTCGCCGCCGCCGCCCCCCC
TGCTGCTGTCGACCCACCTTTCGGGAGGTCGTCCCAGGGGCGCGAGCTGG
GGCGGCAACTGCTCGGGGTGGCAAGACAAGCGCCGGCCGGTTCGTGGGGA
GAGGCAGAGGGGCCGGGGAGGCAGCGGCAGAGAACGTCCCTGGGTCCCGA
GGGGCGTTTTCCTGCCTCCGCTAATGCGGTGGCCGCGGCGGCTGCGCACG
CGGCGGCCGCGGAGGCTGATGCTCCTCTCGCGGAGGGCGTCAGATCTAAG
GATGGGCCTTCATGGGACGGGCAGGTGGAAGAGACTCCCGACGATGTCGC
GGCCATGGAGTACCTTAAGTGGGAGCTGCACGGTGAGAGGCGTTGGAAGG
GGCAACTTCCGTTTTGGGTACGACCGCTGAACAGTGTTTGAAGTTGCGCA
GGTTGCTTTTGTGCGGTCATGAGTAAGGGATATGCCAAAAGGTTGTCCAA
AACGACACACACACTCGGGAGCGATCTTGCCTGTCGAACGCCGTCTCAAA
GCCAAGCTTTCCTCGCTTTATACCGCTCGCAACCCCCCTTCCCGCCGCAC
GCCACCCCAGGAAAGTTCATGGCCTTCCCCGGAGAGCATTACCACAACCT
GTTGGCTAGCCTGGCCTCGGAGATCTACCACAACCGGTACCCGGTGGAGC
ACGGGGTCGACATCCTCCACGGAGTCATGCGAGAAGCTGGACCCGAGGCT
TTGAAGGTACGGGGGAGAGGCTCAGTGAGGTGCAGTGGGGGGCGCGAGGT
TGTATAGTATCTAGCGTATGCGGCTGGCCGATGATCCGAAACGCCAATGA
ACATTTAAAATCGGTCACATACGGCACCCCTTGTCCGAAGAGGCAAGAGT
AGCAGGTTATCGCGGTAGATCCCGCGAATCCCCAGCAGTTCGATGCAGCG
TCTCGCCGTCCGCGGTTGCGCGCTTCGGCGCGCGTAGGACATGTTTGGTG
CGTATTGCGCCTCTCGTTCTTTCCGGCGATGACCAAGCTATTGATTGTAC
ACATGTGTGCTGATACTTCGAAGAAACAGCGACACTCCATTAGTGCATCG
GCAAGTCTTTGATATTCGCACGCCGCTCGATCCCTTGGTGAGCTGCTTAT
CGTTCGATGGGGGCACCCTGCTGCGCTCCGACGTGACGTCGTCGGGCACG
GGGGTAGTGCGGTTGTTTAAGGTTGCGGCGCCGTTGGCGAAGGAGTTGCG
GGTGATAACATTTTTTGGGGTTTCGGAGACGCTTGTGATTGGAAATCGTT
TCGGACTAGTAGTTGACTTTTGAGCCTGGTCTCCGTCACTTCCTCCCGGC
CAATTCCCTCGCATCCCATCCCCTTCGCTATCGTTTTCATTCGTTGCAAG
CTTTTTTTGGGAAGCATGATTGGTGACGCGTCTGAACCCCCCGACCCCCG
ACCCCCCGACCCCCCGCCCCCCCCCCCTGTTGAGCAGAAGTGCGCCAGAA
CACTCAGGCGGATGAACCTTCCGCCGCGGACAACGGCGGGAGTCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1107537..1109233+

>mRNA_P-fluviatile_contig2.3780.1 ID=mRNA_P-fluviatile_contig2.3780.1|Name=mRNA_P-fluviatile_contig2.3780.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig2:1107537..1109233+ (Porterinema fluviatile SAG_2381)
ACAGCAACAATTACAACAACAACGGCGGTCGCTGCTGACGGCGCAGGAAA
CCGACTTCCGCTCCTCACCGGCCCTCCGGGCGGGCCGACATCAAATGGTC
AGGCACACTCGGAAGCCACTAACGGCAAGGGTCTTCTCGGCGCCGCCCTC
GGGGGGACGGGTCCCGGGGGCGCTGCGTTGGTCGCCGCCGCCGCCCCCCC
TGCTGCTGTCGACCCACCTTTCGGGAGGTCGTCCCAGGGGCGCGAGCTGG
GGCGGCAACTGCTCGGGGTGGCAAGACAAGCGCCGGCCGGTTCGTGGGGA
GAGGCAGAGGGGCCGGGGAGGCAGCGGCAGAGAACGTCCCTGGGTCCCGA
GGGGCGTTTTCCTGCCTCCGCTAATGCGGTGGCCGCGGCGGCTGCGCACG
CGGCGGCCGCGGAGGCTGATGCTCCTCTCGCGGAGGGCGTCAGATCTAAG
GATGGGCCTTCATGGGACGGGCAGGTGGAAGAGACTCCCGACGATGTCGC
GGCCATGGAGTACCTTAAGTGGGAGCTGCACGACAGCAACAATTACAACA
ACAACGGCGGTCGCTGCTGACGGCGCAGGAAACCGACTTCCGCTCCTCAC
CGGCCCTCCGGGCGGGCCGACATCAAATGGTCAGGCACACTCGGAAGCCA
CTAACGGCAAGGGTCTTCTCGGCGCCGCCCTCGGGGGGACGGGTCCCGGG
GGCGCTGCGTTGGTCGCCGCCGCCGCCCCCCCTGCTGCTGTCGACCCACC
TTTCGGGAGGTCGTCCCAGGGGCGCGAGCTGGGGCGGCAACTGCTCGGGG
TGGCAAGACAAGCGCCGGCCGGTTCGTGGGGAGAGGCAGAGGGGCCGGGG
AGGCAGCGGCAGAGAACGTCCCTGGGTCCCGAGGGGCGTTTTCCTGCCTC
CGCTAATGCGGTGGCCGCGGCGGCTGCGCACGCGGCGGCCGCGGAGGCTG
ATGCTCCTCTCGCGGAGGGCGTCAGATCTAAGGATGGGCCTTCATGGGAC
GGGCAGGTGGAAGAGACTCCCGACGATGTCGCGGCCATGGAGTACCTTAA
GTGGGAGCTGCACGGAAAGTTCATGGCCTTCCCCGGAGAGCATTACCACA
ACCTGTTGGCTAGCCTGGCCTCGGAGATCTACCACAACCGGTACCCGGTG
GAGCACGGGGTCGACATCCTCCACGGAGTCATGCGAGAAGCTGGACCCGA
GGCTTTGAAGGAAAGTTCATGGCCTTCCCCGGAGAGCATTACCACAACCT
GTTGGCTAGCCTGGCCTCGGAGATCTACCACAACCGGTACCCGGTGGAGC
ACGGGGTCGACATCCTCCACGGAGTCATGCGAGAAGCTGGACCCGAGGCT
TTGAAGCAGAAGTGCGCCAGAACACTCAGGCGGATGAACCTTCCGCCGCG
GACAACGGCGGGAGTCTGACAGAAGTGCGCCAGAACACTCAGGCGGATGA
ACCTTCCGCCGCGGACAACGGCGGGAGTCTGA
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