mRNA_P-fluviatile_contig2.3746.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3746.1
Unique NamemRNA_P-fluviatile_contig2.3746.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig2.3746.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 6.930e-129
Identity = 270/482 (56.02%), Postives = 313/482 (64.94%), Query Frame = 1 
Query:  379 VVRPGKEARGPFLALVSGLQDALDACPAMPGATLEHSIDDCLRRPAGGAAAWSLGATRKFVGGVLSLVSRSPRSLCQAVVSALVRFVAETGCGFADGSLAGDAE--EHQEPRCRRRCFSCDAAVRTGGSISKGTPDAAQAAAAAERRARPLRCSAQEKRDLVLEGVIRWAVDVHFRQCSSLLQASLNRAVCDGIRRALDAVAAASYSSCGRAPAPSFPLGCRLLLSFVGGLAGDGGAQAALFLRERCWIELRLFASGRRARFTRCARRGSGLGTGIGGRVAVAAAAATGGVVSRRRWPELPVLEAYVGHLCLCRHVSDALAAGHLEWLARQALAILRLLDGPDRASGVGVACPAERLVVGEIAAAAAGLTSISCALALXXXXXXXXXXXXXXXXGRKSTSTVVTEAAGNLLEIVFDSDARPLSGVPVPLAQAAVGALKEAGYLRLARTEDLLR-PLAPALVKRRPRVLAAAGREASLVTSVS 1815
            V++   +  GPFLALVSGLQ ALDACPAMP  TLE SI+DCLRRP+ GAA W+ G+TR FV GVLSLVS SPRSLCQAVVS LVRFVA  GC   D SLA DAE  E Q+ R R RC SC  A+         + +AA   A+   RARP  C+AQEKRDLVLE ++RWAVDVHFRQCS LLQAS+NRAVC G+R+AL     A+  S  +A  PSFPLGCRLLLSFVGGLAGDGGAQ A FLRERC  E+R F +  R R           GT  G R A A  A   GV   RR PELP+L+AYVGHLCLCRHVSD L+A HL WLARQALA+LR+LD P+  +    A P  R    + +   A L S+S ALAL                     S++V E  GNLLEIVFDSD RPLS VP PLA+AA+  LKEAG+L+LAR+++LLR P       RR    AA  RE S +  V+
Sbjct:    4 VIQALLQTNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEETQDRRRRSRCLSCSTAL---------SDNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQAL----VAAELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWR--------PPSGTARGRRHADAWTATGRGVA--RRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERR----QNSNFEAVLASLSHALALLLTRPKRGGVC----------SSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLRLPWG----SRRGEPNAAGRREESKLGPVA 444
[Close]
BLAST of mRNA_P-fluviatile_contig2.3746.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 4.690e-80
Identity = 194/359 (54.04%), Postives = 227/359 (63.23%), Query Frame = 1 
Query:  664 DGSLAGDAE--EHQEPRCRRRCFSCDAAVRTGGSISKGTPDAAQAAAAAERRARPLRCSAQEKRDLVLEGVIRWAVDVHFRQCSSLLQASLNRAVCDGIRRALDAVAAASYSSCGRAPAPSFPLGCRLLLSFVGGLAGDGGAQAALFLRERCWIELRLFASGRRARFTRCARRGSGLGTGIGGRVAVAAAAATGGVVSRRRWPELPVLEAYVGHLCLCRHVSDALAAGHLEWLARQALAILRLLDGPDRASGVGVACPAERLVVGEIAAAAAGLTSISCALALXXXXXXXXXXXXXXXXGRKSTSTVVTEAAGNLLEIVFDSDARPLSGVPVPLAQAAVGALKEAGYLRLARTEDLLRP 1734
            D SLA +AE  E Q  R R RC SC AA+    S +    DA++   A     RP  CSAQEKRD+VLE ++RWAVDVHFRQCS LLQAS+NRAVC G+R+AL     A+  S  +A  PSFP GCRLLLSFVGGLAGDGGAQ A FLRERC  ELR F +  R R+    R  SG      GR       ATGG V+ R+  E P+L+AYVGHLCLCRHVSD LAA HL WLARQAL +LR+LD P+  +    A  AER      A     L S+S ALAL                     S+ V E AGNLLEIVFDSDARPLS VP PLA+AA+  LKEAG+++LAR+++LLRP
Sbjct:   33 DDSLALEAEGEEAQGTRRRSRCLSCSAAL----SDNPAGTDASETEGA-----RPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQAL----VAAELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLA--RGRW----RPPSGT---CRGRRHADTCTATGGAVAGRQ-AESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAA-AERRQSSNFADV---LASLSHALALLLTRPKRGGLC----------SSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRP 354
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI6.930e-12956.02F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE4.690e-8054.04F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:823958..830239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box, zinc finger protein
Ec32 orthologEc-01_000310.1
Exons8
Model size3294
Cds size1827
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.91437-UTR-P-fluviatile_contig2:823957..8246941622815832.91437-UTR-P-fluviatile_contig2:823957..824694Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 823958..824694 -
1693563468.0208738-UTR-P-fluviatile_contig2:823957..8246941693563468.0208738-UTR-P-fluviatile_contig2:823957..824694Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 823958..824694 -
1622815832.928276-UTR-P-fluviatile_contig2:825355..8255231622815832.928276-UTR-P-fluviatile_contig2:825355..825523Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 825356..825523 -
1693563468.0306451-UTR-P-fluviatile_contig2:825355..8255231693563468.0306451-UTR-P-fluviatile_contig2:825355..825523Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 825356..825523 -
1622815832.945162-UTR-P-fluviatile_contig2:825803..8263651622815832.945162-UTR-P-fluviatile_contig2:825803..826365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 825804..826365 -
1693563468.0412068-UTR-P-fluviatile_contig2:825803..8263651693563468.0412068-UTR-P-fluviatile_contig2:825803..826365Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 825804..826365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.9623437-CDS-P-fluviatile_contig2:826365..8275281622815832.9623437-CDS-P-fluviatile_contig2:826365..827528Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 826366..827528 -
1693563468.1749496-CDS-P-fluviatile_contig2:826365..8275281693563468.1749496-CDS-P-fluviatile_contig2:826365..827528Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 826366..827528 -
1622815832.973408-CDS-P-fluviatile_contig2:827929..8281941622815832.973408-CDS-P-fluviatile_contig2:827929..828194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 827930..828194 -
1693563468.1838646-CDS-P-fluviatile_contig2:827929..8281941693563468.1838646-CDS-P-fluviatile_contig2:827929..828194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 827930..828194 -
1622815832.9850771-CDS-P-fluviatile_contig2:828795..8288791622815832.9850771-CDS-P-fluviatile_contig2:828795..828879Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 828796..828879 -
1693563468.1995955-CDS-P-fluviatile_contig2:828795..8288791693563468.1995955-CDS-P-fluviatile_contig2:828795..828879Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 828796..828879 -
1622815833.0026972-CDS-P-fluviatile_contig2:829227..8292881622815833.0026972-CDS-P-fluviatile_contig2:829227..829288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 829228..829288 -
1693563468.2113285-CDS-P-fluviatile_contig2:829227..8292881693563468.2113285-CDS-P-fluviatile_contig2:829227..829288Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 829228..829288 -
1622815833.0139132-CDS-P-fluviatile_contig2:829759..8298691622815833.0139132-CDS-P-fluviatile_contig2:829759..829869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 829760..829869 -
1693563468.2215378-CDS-P-fluviatile_contig2:829759..8298691693563468.2215378-CDS-P-fluviatile_contig2:829759..829869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 829760..829869 -
1622815833.0288181-CDS-P-fluviatile_contig2:830095..8302391622815833.0288181-CDS-P-fluviatile_contig2:830095..830239Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 830096..830239 -
1693563468.237825-CDS-P-fluviatile_contig2:830095..8302391693563468.237825-CDS-P-fluviatile_contig2:830095..830239Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 830096..830239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3746.1prot_P-fluviatile_contig2.3746.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 826366..830239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3746.1

>prot_P-fluviatile_contig2.3746.1 ID=prot_P-fluviatile_contig2.3746.1|Name=mRNA_P-fluviatile_contig2.3746.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=609bp
MEKVEGWERLGQLSRMLQSFRRMYVHREIEEDSPVFLEWRRKLLRFLKGL
LLSCEVQGTRESGDWVHFRFEGTLSKVLGHSCCDWSSPDAFGCGLMLEVL
RALSQVQSELPVCGPAIVHVLLHRLAVVRPGKEARGPFLALVSGLQDALD
ACPAMPGATLEHSIDDCLRRPAGGAAAWSLGATRKFVGGVLSLVSRSPRS
LCQAVVSALVRFVAETGCGFADGSLAGDAEEHQEPRCRRRCFSCDAAVRT
GGSISKGTPDAAQAAAAAERRARPLRCSAQEKRDLVLEGVIRWAVDVHFR
QCSSLLQASLNRAVCDGIRRALDAVAAASYSSCGRAPAPSFPLGCRLLLS
FVGGLAGDGGAQAALFLRERCWIELRLFASGRRARFTRCARRGSGLGTGI
GGRVAVAAAAATGGVVSRRRWPELPVLEAYVGHLCLCRHVSDALAAGHLE
WLARQALAILRLLDGPDRASGVGVACPAERLVVGEIAAAAAGLTSISCAL
ALLLTRPRRGGGGGHGRGGRKSTSTVVTEAAGNLLEIVFDSDARPLSGVP
VPLAQAAVGALKEAGYLRLARTEDLLRPLAPALVKRRPRVLAAAGREASL
VTSVSGHW*
back to top

mRNA from alignment at P-fluviatile_contig2:823958..830239-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3746.1 ID=mRNA_P-fluviatile_contig2.3746.1|Name=mRNA_P-fluviatile_contig2.3746.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6282bp|location=Sequence derived from alignment at P-fluviatile_contig2:823958..830239- (Porterinema fluviatile SAG_2381)
ATGGAGAAAGTCGAGGGTTGGGAGCGGCTGGGCCAGCTGTCGCGAATGCT
TCAGTCGTTCCGGCGTATGTACGTTCATCGAGAGATCGAGGAAGATAGTC
CCGTTTTCCTGGAATGGAGACGAAAGCTTCTTCGATTTTTGAAGGTAGGG
CCGTGGTTCAGAGGTGTGTGTACAGGCCACGAAGCAGGTGCAACGTAGCA
GACGCCTTGCCGCTTTTCCAAGGGACAATGGTATCGATCATACACGGTGG
GCCTCGGAGGACAGTAGTCTGACTTCATCAGCCGTCACTGAAAAGTGTCG
GCAAAGCTGTGCTCCCCGAACTCTGACCCGTTATCCTGTGGGACTACGCG
GCCCTGCCACCGCGCAACAGGGACTGCTCCTCAGCTGTGAGGTGCAGGGG
ACGCGAGAGAGTGGCGATTGGGTTCACTTTCGTTTCGAGGGCACTCTGTC
GAAGGTGTTGGGCCACAGCTGCTGCGACTGGTGCGTAGCAGGTGTATATA
GGTGCAGGCATGACAGCAGTAGTGGAGAAATGTCGAACAGCATGGTGTCC
TTAATTTGTCCCGCGTCCTCCCTCGTCAAACACAAGTTGCCGGTACTTTT
GTGTCGCAGCAGTCGGCGCGTTCCCGCGATGTTTCGATCACGTCCTTGGG
AAATGCAGTCAGCAAGAGAAAGAGTACCCTGTAATCTCATCGCTTCCGCC
GTGCCGTTCTCTGTCGATTCAATGTTCGACCCCATCATGCCTCCGTTCGC
CATGTGTTCGTTTCGTCTTCGCTTCCTGGCGCCCCCTCCTCCCTCTCAAT
CGTTGCGGGGGCAGTACCTGCCTGTCTCTGTTCCCTGCCCCCCAACCTCA
AGCGCCGTGTGTTTTCCCGATTTCAACCGCTTGAGGTCGTTTCTATCGGG
TCTTGACCAAAGCTTCTCTGGCTGTGCTGGTTGACTCTACCCGGTGAGCA
GGTCTTCCCCGGACGCGTTTGGGTGCGGGTTGATGCTGGAAGTACTGCGA
GCGCTTAGTCAGGTGCATGAGAGGGCAAAGTAGCATCGAAAACCCTGTAT
CGCCAGCGTGTGCTTTTTTTTCTTTTGGAATCGACAATTCGACAAATTTA
ATCGTTCAACTTGGCCCCTGATCGATGCCCACACGTCACACGAAGAAATT
CAGTCGATCGCCGGGTGTGTCGTGATGTGGCGTACGCAACAAGCGCTTGA
CTTCCGTTTGTTTCGACGCTGGTCAAGTCCGGGTAGAAACAGGTTGCTCT
TTACTTTTGAATAAGATAGAGTTGGGTGGGTTTGGCTGGTGCCGTCGGTT
TATGAACGACAGTATGTCGCCGCTGTTCGGTGCTGTTGCTGCGCGCGCGT
TCTTGTACAGGTTCAATCCGAGCTGCCTGTGTGTGGGCCCGCGATTGTGC
ACGTCCTTCTCCATCGCCTGGCCGTAGTTCGCCCCGGCAAGGAGGTGAGG
GTCGTGAGTACACCCCGAGTGCGAGCGAGTGAGAGGTGTTGGTGTTTGGG
ACAGTTTTACCAGCGCACGGCGCGACTTGACTGCTTCAGGTCCAGTGTTG
CGGCAGCTAGGACTTGCGCCACTATTCAACGCTGATGGAGATACGAAGGT
GGCATATTCTCTTTCCCGCTGGTGCGACCGGCTTTCTCTCACGCCTGGGC
GCCTTCGCAGTGTCAGTGTGGCCGTTCGGCACGAGAGTACACTGCAGTGA
ACGGCTTGTCCCGCGTTCAAACGTATCACCGCCTTCTGCAGTCACCGCAA
TCGCTTGAAAGCTAATTTCGTTACCCCCGGAAAAATGAACAGAAAATGCG
TGTTTTTTGTATCCGTATTTTAGCGGTAGGGCCTGTGTCGAAATTAATTA
CTCGATTTTGAGTTAAAAATGCCATTCTTTTAAGCAAGGTTAGATATGTT
CGTCTTTTCGGGGATCCGAACCTCTCTAGCAGTTGATCCTGTTCCCCGAC
CCTTGGCACTTAATCCCCTCACTTCGCCAATAAGCGCGTGCCTCTCGCCC
ACGCAAAATACCCCAAAATCAAATTCACCGCCATCGCTCCCGCAGGCACG
AGGCCCCTTCCTCGCCCTGGTGTCGGGCTTGCAGGACGCGCTGGACGCCT
GCCCAGCGATGCCCGGCGCCACCCTGGAGCACTCGATCGACGACTGCCTC
CGGCGGCCCGCCGGCGGCGCGGCGGCATGGTCGCTAGGCGCCACGCGAAA
GTTTGTCGGCGGGGTTCTGTCCTTAGTATCAAGGTCACCGCGATCACTGT
GCCAGGCGGTAGTGTCAGCGCTGGTACGGTTCGTGGCGGAAACTGGATGC
GGCTTTGCCGGTGAGTAGACGGACCGGGTCAGTGGGTGGTTGCCGCCCTG
CTTGTGTTTGCACGTCGAAGCCCCCTCGGAGCGGTTTGCTGGTGGCTTCC
AGAGCCTTCCTGAACGCGGGGAACGAACGCTTGATGCCTGGTACAAAATA
GTTGAGCGCTCACGTCGCGGAAGTCAAAGAGGTCGTGCAAAGCTGGATGG
AGGCTGAGATAGTTTTCGGTCCTGCGAAATGTCCTTGCCCCCGCCCGAGG
ATATTTCCACAGGCGCTTTTGTCGTAAAATCACTACGTTATCAGCAACCG
TCAATCCATCCAGCAGGGGAAGGCCTGCGTAGGCCAAATTGTCATCGCGC
GCTTTGCCATGAAAGCAGCGCCGTGTATCTTTCTCGCTCCTGTGACCGTT
GACCCCGGCAGACGGCTCGTTAGCGGGAGACGCCGAAGAACATCAAGAGC
CGCGATGCCGCAGGCGGTGCTTTTCGTGCGACGCGGCCGTCCGCACCGGC
GGCAGCATTTCGAAGGGCACGCCCGACGCTGCTCAGGCGGCGGCGGCGGC
GGAGCGGAGAGCTCGACCCCTCCGCTGCAGCGCCCAAGAGAAGCGAGACC
TAGTCCTCGAGGGCGTGATAAGGTGGGCAGTGGACGTCCACTTCCGGCAG
TGCTCTAGTCTCCTCCAAGCCTCGCTGAATCGCGCCGTTTGCGATGGCAT
CCGCCGAGCCCTGGACGCCGTTGCGGCTGCCTCCTATAGCTCCTGCGGAC
GAGCGCCGGCGCCGTCCTTCCCTCTCGGCTGCCGGCTGCTGCTGTCGTTC
GTCGGGGGGCTCGCCGGGGACGGCGGCGCGCAGGCGGCCTTGTTCCTCCG
GGAGCGGTGCTGGATTGAGCTGCGGCTCTTCGCCAGCGGTCGCCGCGCGC
GGTTCACGCGTTGTGCTCGTCGGGGAAGCGGGCTCGGAACAGGTATCGGC
GGTCGTGTCGCCGTCGCCGCCGCCGCCGCCACCGGGGGCGTAGTTTCGCG
CCGAAGATGGCCGGAATTACCCGTACTCGAGGCCTACGTGGGCCACCTTT
GTCTCTGCAGACACGTGAGTGATGCTTTAGCCGCCGGGCACCTTGAGTGG
CTGGCCAGGCAGGCCCTGGCCATTCTTCGGCTCCTAGACGGCCCGGACCG
TGCATCGGGCGTCGGAGTCGCTTGCCCAGCCGAGCGGCTGGTCGTCGGGG
AAATTGCCGCGGCGGCAGCGGGGTTGACTTCGATCTCATGCGCTCTCGCC
CTGCTGCTGACTCGGCCGAGACGAGGAGGAGGGGGAGGTCACGGCCGCGG
CGGCCGTAAATCGACCTCCACTGTCGTGACCGAGGCCGCTGGCAACCTGC
TCGAGATCGTTTTTGACAGCGACGCCCGGCCGCTGTCGGGCGTGCCGGTC
CCGCTGGCCCAGGCGGCCGTCGGCGCGTTGAAGGAGGCCGGCTACCTACG
GCTCGCCCGGACGGAGGATCTCTTGCGACCGCTGGCGCCGGCGCTGGTGA
AGCGACGTCCGAGGGTGTTGGCGGCGGCGGGGCGCGAAGCATCACTTGTC
ACCAGTGTTTCGGGGCACTGGTGATGGTTCGGACGCTGGAGATTATTCTT
TTATCGATGGCGTGGAGTTCCGTTGTGCGAGCGTCGCTTTCAGGGGGAGT
TGGTGCCTCGCTGCCGCGGGGTTGGACGCGCGGCTTCCCTTGCTGACAGC
GGTTCGGAAGAGACGCCTGGGCAGTGGCGGCAGCGGAGCCGACGCCGAAA
GTTCTGCGGATAGCGGCGACAGCGACAGCAGCGACGAAGGCGACATGGAT
ATCAGTGCAGATTCCGACGCAGAGCCGGCCGATGGGAACGTTTGGGACCG
CGTGCCTGACGAGGTGGCCCTCCGCGTGTTCTCTTTCCTCACGCCGAAGC
GCGTCTGCCGTCTCGCCTGCGTGGACCGCGCCTGGAGGGAGCTTGTCGTG
GTGTCCACGGTGTGGCGGCCCTTCTTCGAGGCGCGCTGGCCGGTGACGTT
TATCGACAAGAAGGAGGATCTGGTGTTGGTGTCGGACAGGCTCCTGCGAG
AGGAGTCACGCTTAAGGGGAGCGCCGAGCCGCAAGAGACGGCGGGGTGGG
AGTGCCGGTGTCGTTCGCTGGGGGGCCGTACCCGAAGTGAGTGAACGAGC
TTCGTCTGTGACGATTGTGATATTTTACAGGATGTCGTTGTCTACATCGT
GTCTGAAAAACACAAAAGGTTTGTTGTCGCCATGTTGGCTTTTTTGGGAT
GTTGACGTCATGGCATCGCATGGAGTACGCAGTGCCTTTGTACACAGTGC
GTTGAACGCACGCCCGCGGTTTCAATATATCATCACGAAAGCGCGTGTTC
CGAAACGGCCGGCGAAGAGACTATCCGTATGACGTTGGAGACGTTTGTTC
CCGCGGCCCTACCCAGGATACAAGCTCTATGCAACCGCCGCGAGACTGGA
TGGCGCTCTACAGAGATCGGCACAGAGCAGAACGGGCAGCTCGAGGGAGG
CGTGCCGCAAAGACCAACTTTTCATGGCTGGTGTGCCCCTTCCTGGGTTG
TGTGTGCTCACTCAAGTCCGAGTACTCCCTGAAGGTGGGAGGGAGTTGGC
GATGTTTTTTGTTTGCTTGGCGCTCTAGTACTAAGTGAAAATGATTCAAA
CGTCATGATGCCTCGCGGGGTGAGACCAACAGACCGGGAAAGCGGCGTGC
GATACCAGTCGCTCGGGGGCACGTTGTAGCAGGTAGCCGTGCACCCACGG
GGCGATGTGAACCCGTCAAGCCAAAAAATTCAATCTGTCCATGCACCCAC
GAACGTGTGTGGGTTCTAAGAAAAGACCCTGCCCTCACCAAGATGTAGAG
TAAGGCTTCGACGCGTTCGGGTGTCAAGTTTACAGTAGTCAATCCTGTGG
AGTCCTTGATTTTTCGGGAGATGATTGTTTCGATTTCGCCGCTCGAAGGT
TGCGAGAGATGCGTAGCACATTGGTGAGCCGTGGGCGTCGAACAAGTATC
GAGATCCCTGCAGGCGCTTGAAACTCGGAAGGGAGCGGCTTAACCGGAAC
GATTGACATTAGCCCCATGTGTTCACGATCTGTTCACTGTGGTGGTTGAG
GTGAAAAAAAATGAAATCTGGCGTTACGTGCTGTTCCCATCGTGCCGGGC
ATCCGTACGCAGGTCGGTCTCCCCCCCCTCTCCCCCCTCCTCCATATTTC
CGGGTTTCTTTGTTTTGACCCCCCTCCTCCCACCCCCTCCGACAGCGCCA
CATCCAAACGCACAAGCGGGTGCCGGTGAAACGACGGGTCACCAGAAAAA
AGTAATTCCACGAACAAGAGCGGCGACACCGGACCAACACCAGCCGCCCC
AACAAGTTCGCTCTAAGTGACCCTCAAGTCCCAAGAGTCCGGGAGGTTTC
TTTTCCTTGATTGGGGTACCCAAGCACAGGATGTAGCATGCTAACAGGAT
GTTCTGCTGAAGGGAGCTGCCCTTCCTCCAGTACGCAGATAAAATTGCTG
CCGGACTGGACATGCATCCAGCCCGGACTGCGCTGGCGGGCATCAGTCGG
GCGATCAACTTGGGCGAGTTTTCCTGGCAGCAAGTTGATTTTTTCGTCGT
CTCTTCCAAGTGGAACGCGGTGTATGGCGGCTCGGAGCAGCGGCGCATCC
AGTGCCGAGGACATCCGTGCATTTTTGAGGAAGTTTTTCGAGCTCGCGTT
GGAGGAAAGAGACGCCCTGGGGGCGGAGGGATCAAAGAAGGCCAATGATC
CGCTCGGTGCGGTACACGAAGAAGCAGCAACGAGGGATCAATCGCCTGGC
AGGCTCACGTTTGGTGGCCGACAAGCGATGTGTCCAATGCTCTAGCTTCG
CTTGGCACTTCCTCATCGGCGCTCTTTTTACGTTAGCTGGCACGAAGGCC
ACTCGATTAGTCGGTACTTAAGCTGTCAGTCACCCCGAGTCTTGCGGCCC
AATGAGTTCATCTCGCAGAGGGTGGTGTCATT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig2:823958..830239-

>mRNA_P-fluviatile_contig2.3746.1 ID=mRNA_P-fluviatile_contig2.3746.1|Name=mRNA_P-fluviatile_contig2.3746.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3654bp|location=Sequence derived from alignment at P-fluviatile_contig2:823958..830239- (Porterinema fluviatile SAG_2381)
ATGGAGAAAGTCGAGGGTTGGGAGCGGCTGGGCCAGCTGTCGCGAATGCT
TCAGTCGTTCCGGCGTATGTACGTTCATCGAGAGATCGAGGAAGATAGTC
CCGTTTTCCTGGAATGGAGACGAAAGCTTCTTCGATTTTTGAAGATGGAG
AAAGTCGAGGGTTGGGAGCGGCTGGGCCAGCTGTCGCGAATGCTTCAGTC
GTTCCGGCGTATGTACGTTCATCGAGAGATCGAGGAAGATAGTCCCGTTT
TCCTGGAATGGAGACGAAAGCTTCTTCGATTTTTGAAGGGACTGCTCCTC
AGCTGTGAGGTGCAGGGGACGCGAGAGAGTGGCGATTGGGTTCACTTTCG
TTTCGAGGGCACTCTGTCGAAGGTGTTGGGCCACAGCTGCTGCGACTGGG
ACTGCTCCTCAGCTGTGAGGTGCAGGGGACGCGAGAGAGTGGCGATTGGG
TTCACTTTCGTTTCGAGGGCACTCTGTCGAAGGTGTTGGGCCACAGCTGC
TGCGACTGGTCTTCCCCGGACGCGTTTGGGTGCGGGTTGATGCTGGAAGT
ACTGCGAGCGCTTAGTCAGGTCTTCCCCGGACGCGTTTGGGTGCGGGTTG
ATGCTGGAAGTACTGCGAGCGCTTAGTCAGGTTCAATCCGAGCTGCCTGT
GTGTGGGCCCGCGATTGTGCACGTCCTTCTCCATCGCCTGGCCGTAGTTC
GCCCCGGCAAGGAGGTTCAATCCGAGCTGCCTGTGTGTGGGCCCGCGATT
GTGCACGTCCTTCTCCATCGCCTGGCCGTAGTTCGCCCCGGCAAGGAGGC
ACGAGGCCCCTTCCTCGCCCTGGTGTCGGGCTTGCAGGACGCGCTGGACG
CCTGCCCAGCGATGCCCGGCGCCACCCTGGAGCACTCGATCGACGACTGC
CTCCGGCGGCCCGCCGGCGGCGCGGCGGCATGGTCGCTAGGCGCCACGCG
AAAGTTTGTCGGCGGGGTTCTGTCCTTAGTATCAAGGTCACCGCGATCAC
TGTGCCAGGCGGTAGTGTCAGCGCTGGTACGGTTCGTGGCGGAAACTGGA
TGCGGCTTTGCCGGCACGAGGCCCCTTCCTCGCCCTGGTGTCGGGCTTGC
AGGACGCGCTGGACGCCTGCCCAGCGATGCCCGGCGCCACCCTGGAGCAC
TCGATCGACGACTGCCTCCGGCGGCCCGCCGGCGGCGCGGCGGCATGGTC
GCTAGGCGCCACGCGAAAGTTTGTCGGCGGGGTTCTGTCCTTAGTATCAA
GGTCACCGCGATCACTGTGCCAGGCGGTAGTGTCAGCGCTGGTACGGTTC
GTGGCGGAAACTGGATGCGGCTTTGCCGACGGCTCGTTAGCGGGAGACGC
CGAAGAACATCAAGAGCCGCGATGCCGCAGGCGGTGCTTTTCGTGCGACG
CGGCCGTCCGCACCGGCGGCAGCATTTCGAAGGGCACGCCCGACGCTGCT
CAGGCGGCGGCGGCGGCGGAGCGGAGAGCTCGACCCCTCCGCTGCAGCGC
CCAAGAGAAGCGAGACCTAGTCCTCGAGGGCGTGATAAGGTGGGCAGTGG
ACGTCCACTTCCGGCAGTGCTCTAGTCTCCTCCAAGCCTCGCTGAATCGC
GCCGTTTGCGATGGCATCCGCCGAGCCCTGGACGCCGTTGCGGCTGCCTC
CTATAGCTCCTGCGGACGAGCGCCGGCGCCGTCCTTCCCTCTCGGCTGCC
GGCTGCTGCTGTCGTTCGTCGGGGGGCTCGCCGGGGACGGCGGCGCGCAG
GCGGCCTTGTTCCTCCGGGAGCGGTGCTGGATTGAGCTGCGGCTCTTCGC
CAGCGGTCGCCGCGCGCGGTTCACGCGTTGTGCTCGTCGGGGAAGCGGGC
TCGGAACAGGTATCGGCGGTCGTGTCGCCGTCGCCGCCGCCGCCGCCACC
GGGGGCGTAGTTTCGCGCCGAAGATGGCCGGAATTACCCGTACTCGAGGC
CTACGTGGGCCACCTTTGTCTCTGCAGACACGTGAGTGATGCTTTAGCCG
CCGGGCACCTTGAGTGGCTGGCCAGGCAGGCCCTGGCCATTCTTCGGCTC
CTAGACGGCCCGGACCGTGCATCGGGCGTCGGAGTCGCTTGCCCAGCCGA
GCGGCTGGTCGTCGGGGAAATTGCCGCGGCGGCAGCGGGGTTGACTTCGA
TCTCATGCGCTCTCGCCCTGCTGCTGACTCGGCCGAGACGAGGAGGAGGG
GGAGGTCACGGCCGCGGCGGCCGTAAATCGACCTCCACTGTCGTGACCGA
GGCCGCTGGCAACCTGCTCGAGATCGTTTTTGACAGCGACGCCCGGCCGC
TGTCGGGCGTGCCGGTCCCGCTGGCCCAGGCGGCCGTCGGCGCGTTGAAG
GAGGCCGGCTACCTACGGCTCGCCCGGACGGAGGATCTCTTGCGACCGCT
GGCGCCGGCGCTGGTGAAGCGACGTCCGAGGGTGTTGGCGGCGGCGGGGC
GCGAAGCATCACTTGTCACCAGTGTTTCGGGGCACTGGTGAACGGCTCGT
TAGCGGGAGACGCCGAAGAACATCAAGAGCCGCGATGCCGCAGGCGGTGC
TTTTCGTGCGACGCGGCCGTCCGCACCGGCGGCAGCATTTCGAAGGGCAC
GCCCGACGCTGCTCAGGCGGCGGCGGCGGCGGAGCGGAGAGCTCGACCCC
TCCGCTGCAGCGCCCAAGAGAAGCGAGACCTAGTCCTCGAGGGCGTGATA
AGGTGGGCAGTGGACGTCCACTTCCGGCAGTGCTCTAGTCTCCTCCAAGC
CTCGCTGAATCGCGCCGTTTGCGATGGCATCCGCCGAGCCCTGGACGCCG
TTGCGGCTGCCTCCTATAGCTCCTGCGGACGAGCGCCGGCGCCGTCCTTC
CCTCTCGGCTGCCGGCTGCTGCTGTCGTTCGTCGGGGGGCTCGCCGGGGA
CGGCGGCGCGCAGGCGGCCTTGTTCCTCCGGGAGCGGTGCTGGATTGAGC
TGCGGCTCTTCGCCAGCGGTCGCCGCGCGCGGTTCACGCGTTGTGCTCGT
CGGGGAAGCGGGCTCGGAACAGGTATCGGCGGTCGTGTCGCCGTCGCCGC
CGCCGCCGCCACCGGGGGCGTAGTTTCGCGCCGAAGATGGCCGGAATTAC
CCGTACTCGAGGCCTACGTGGGCCACCTTTGTCTCTGCAGACACGTGAGT
GATGCTTTAGCCGCCGGGCACCTTGAGTGGCTGGCCAGGCAGGCCCTGGC
CATTCTTCGGCTCCTAGACGGCCCGGACCGTGCATCGGGCGTCGGAGTCG
CTTGCCCAGCCGAGCGGCTGGTCGTCGGGGAAATTGCCGCGGCGGCAGCG
GGGTTGACTTCGATCTCATGCGCTCTCGCCCTGCTGCTGACTCGGCCGAG
ACGAGGAGGAGGGGGAGGTCACGGCCGCGGCGGCCGTAAATCGACCTCCA
CTGTCGTGACCGAGGCCGCTGGCAACCTGCTCGAGATCGTTTTTGACAGC
GACGCCCGGCCGCTGTCGGGCGTGCCGGTCCCGCTGGCCCAGGCGGCCGT
CGGCGCGTTGAAGGAGGCCGGCTACCTACGGCTCGCCCGGACGGAGGATC
TCTTGCGACCGCTGGCGCCGGCGCTGGTGAAGCGACGTCCGAGGGTGTTG
GCGGCGGCGGGGCGCGAAGCATCACTTGTCACCAGTGTTTCGGGGCACTG
GTGA
back to top