mRNA_P-fluviatile_contig2.3679.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3679.1
Unique NamemRNA_P-fluviatile_contig2.3679.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig2.3679.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.570e-19
Identity = 76/169 (44.97%), Postives = 92/169 (54.44%), Query Frame = 3 
Query:   99 LAAFAMPGQFGCVSAFP--STPLVSSSEG-------RTLRCRPA--CRFRRRRG-----DQVLSLSGEALAIGA-VVAGLTTVAACRGLSALSGAFSLADYRTTSGHDLCLDERLQSKRRKLLHPSDAFPPNASPGAYPVMGVPWSGCAEEGGDVDWREEIWVASLLPD 554
            LAA A    FG  +AF     P +SS  G       R   C PA  C   RRR      +  L+L  EALA+GA V+AG   + A RGLS L+GAF LADYRTTSGHDL LDE+L SKRR+L   S+      + G+    G   +     G + DWREEI +AS LPD
Sbjct:    8 LAALAAGQVFGVANAFHVYPPPTLSSRGGHVEIAPTRPFSCLPAASCGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSET-----TSGSLESTGGRGASETALGVETDWREEIRLASQLPD 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI1.570e-1944.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:315343..318872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001730.1
Exons3
Model size1284
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3679.1prot_P-fluviatile_contig2.3679.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 316022..318855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.002265-UTR-P-fluviatile_contig2:315342..3160211622815826.002265-UTR-P-fluviatile_contig2:315342..316021Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 315343..316021 -
1693563437.7014377-UTR-P-fluviatile_contig2:315342..3160211693563437.7014377-UTR-P-fluviatile_contig2:315342..316021Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 315343..316021 -
1622815826.0426197-UTR-P-fluviatile_contig2:318855..3188721622815826.0426197-UTR-P-fluviatile_contig2:318855..318872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 318856..318872 -
1693563437.73941-UTR-P-fluviatile_contig2:318855..3188721693563437.73941-UTR-P-fluviatile_contig2:318855..318872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 318856..318872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.012172-CDS-P-fluviatile_contig2:316021..3162651622815826.012172-CDS-P-fluviatile_contig2:316021..316265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 316022..316265 -
1693563437.7110102-CDS-P-fluviatile_contig2:316021..3162651693563437.7110102-CDS-P-fluviatile_contig2:316021..316265Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 316022..316265 -
1622815826.023163-CDS-P-fluviatile_contig2:317658..3177461622815826.023163-CDS-P-fluviatile_contig2:317658..317746Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 317659..317746 -
1693563437.7186038-CDS-P-fluviatile_contig2:317658..3177461693563437.7186038-CDS-P-fluviatile_contig2:317658..317746Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 317659..317746 -
1622815826.032787-CDS-P-fluviatile_contig2:318599..3188551622815826.032787-CDS-P-fluviatile_contig2:318599..318855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 318600..318855 -
1693563437.7301745-CDS-P-fluviatile_contig2:318599..3188551693563437.7301745-CDS-P-fluviatile_contig2:318599..318855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 318600..318855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3679.1

>prot_P-fluviatile_contig2.3679.1 ID=prot_P-fluviatile_contig2.3679.1|Name=mRNA_P-fluviatile_contig2.3679.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=196bp
MQHTGADQGHHMDLSRMRHCFAIGAFALAAFAMPGQFGCVSAFPSTPLVS
SSEGRTLRCRPACRFRRRRGDQVLSLSGEALAIGAVVAGLTTVAACRGLS
ALSGAFSLADYRTTSGHDLCLDERLQSKRRKLLHPSDAFPPNASPGAYPV
MGVPWSGCAEEGGDVDWREEIWVASLLPDRDNAVVSLGNEEEANP*
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mRNA from alignment at P-fluviatile_contig2:315343..318872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3679.1 ID=mRNA_P-fluviatile_contig2.3679.1|Name=mRNA_P-fluviatile_contig2.3679.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3530bp|location=Sequence derived from alignment at P-fluviatile_contig2:315343..318872- (Porterinema fluviatile SAG_2381)
AATGACACTGCGACAACATGCAGCACACAGGCGCTGACCAGGGGCACCAC
ATGGACCTATCAAGAATGAGACATTGCTTCGCTATCGGAGCCTTCGCGCT
TGCAGCATTCGCCATGCCTGGTCAGTTCGGTTGCGTAAGTGCCTTCCCCT
CCACTCCGCTCGTCTCCAGCTCAGAAGGCAGAACATTGAGATGCCGGCCA
GCATGCCGCTTCCGACGGAGGCGAGGTGACCAAGTGCTGTCACTGAGCGG
GGAAGCGCTTGCGATCGGAGCAGGTGAGACGGAGTTGTTGCATGAGAGAA
GCGAGGGGGGGAAGGAGAGAGGGAGAGAGAGATACAGGTGTACTGGAAAA
AAGCGAGGAGCAACGAGGTGTGCCAGGCCATCCGCGCACAAGGTACGACG
ACAAGCAGTTGCCAGATTTCGGTATGCCTTGAAACGTTACGCCACGAACT
GGCGGCAAGGTTCGCCAGATTTTACTGTGTCTCATTGCACGAGTGCCGGG
AAAGATCGCGACTTGCTCCAGTCAATTTTTGGACTTCACCAATGGATTCA
CACTCCAAAAGTCAACAAAGGTAGGGGTTGACCCATTGCAGTAGATCGTG
GCTCATCTCCTTGCTTGATGTTACTGCTGCAGAAACACTGTTTCCCTCCG
GTACCTGGCACACCATGTATAGAGACTTATCTTATTGTGTGATCTAAGTA
AATTCTTCGCCGGAAATTTCTGCCCCGGCAGTGGGAATGTGCTGGGAAAC
CTGTGAATTTCGGGATCACGCGCAAATGATTGCGACAAGCTTGTGTTTCC
ATCCTTCTTCTGGAATTCCACCGCGTGCAATGATTGTGTGGCGCACGTGA
CAGCGGTATGCTCCGCTTGTTTTTGCGCAGGATACCTTTTCAACCCCCGC
ACACGCAGAGCAGGGGACTCCTGGATTGAATCATGTGGCGCGCTGTGCAC
CCAGAAACGAGGGGATGAAGCAACTGCAAACCAGAAGCAAAGGAAATTCG
TCCGGAACACCAGCCTTCGACGCAGAAGCAGCTGACTTGAATGATACCCA
CTTACGTTGTCCTGCATGAACACACGCCCCACCTGCTCGATCACTGGGCG
TTTTATGCCGGCGCGCTGGAGAGAAGTGGTTGCGGGGCTCACAACGGTTG
CAGCGTGTCGAGGGCTCTCAGCCCTTTCCGGAGCCTTCAGTCTTGCGGAC
TACCGAACAACAAGGTGAGGAATGTGCTCCTCTACGCGGCTCAATCGCTG
CGAAAGTGTCCGATATGACTGGCGCACTTGTCGCGAACAAACACTCCGTC
ACGCGTAGCAAATTGTTCGGGGGGAAATGTATGTCGATAGGTGAGATTTT
CGTGCTGAGGCTTCCCCTCAGCTGTCTGGAGTTGCGCCAAGTATGTCGCA
CGTTACTCTCGTAATTTCATGGCAATCTCGCCGTTCGGGTTTGTCTCCTG
CATGGCTTAACCCCCAAAAAGTGCTGGTTGTTGTTTGACTCGGCCTGAGG
CGTGATCTGATGCCCGATATCTGTTGTGTGGTGTCCCTCTCAATGCGGAA
CGGGGGGGTAGTCTCACTAGGTACAAAAAGGTAAACCATGTGCTCCATTA
GTATCTTCGTCACCCAAGGCAACACGACGAGAGTCATGACATCGATGAAA
ACGGAGCGGACCTGGGTGGAATGCACAAAACTTTCACATTGGCAGGGGGC
TCCTTTATAGAGAGCCTTTTCGTGTCGCCCCCCCCCCTTCCGACGAATCT
CCCAAACCTGTGCTCGAGTTTTCCTCCCTGTCTTGCCTGATGTCGTCCAC
TCCACGCGGTCTCTCTTATTTCTCAGTATCCACCAACGCCGTCACTCATG
AGTATTTCTTCCTCATTCCATTTGTTTCGCTTCAGCATGGAGGGCATCAA
GCACCACCTATGACCACTGTCTTGGCTTTTCGAAGACCGAAATCTATGCC
CCTTGAGTATTCGCTACTCGAATATATGCTCTCGTCTCCGCGAGAACCAT
CGGCCTCAACAACGAAATGAACAACCAATTCTCCACGGTTTCAAGCAAAT
CGCCACAAATATTTTAAGCATGCTGCATACTTCGAGTATGCAAGGGTGAA
CATGGAAGCCAAATTTCTCGTGAACAGTCAAACGTCGTCATTCCGTGTAG
CGCTCCAAGTTAGTTGGAATCATTGACGATTGAGCCCGTTGCTCTCCCGA
CTGAAGGTTACAGATGCACCAATTCAACGCCAAGCTGCCTTTGAAATGGA
AAATCATGAACATTATCTCGCAGAGAACAAGTGCGGCAACCGCGCGGTGT
GAGCAGCAAGAAGCTGCTTTCACCGGGGTAGCTCTGTCAGCCATCAACGA
AGATAGTTTCTCAAAAGACTCGTACAACATGCCGGTTTTCCCTGTTGCAC
TCCACTTGTTTTAACCTGACGCCCGCTTCGGCTTGTCCTGTCGAATACGG
CATGCTCACTTGTCTTGCATATCTCGTGCTGTCTCCCTTGGCATGTGCCT
TATCTTGTCGTCTCGACGACGACGGCATATTTCATTTCGTCTGTTGCACC
TCTTCCGTCCTTGGCGTCCACCGCATCTGCTTGTCCTTGTCTCCGGTCTC
CCGCCAGCGGGCACGACCTTTGTCTGGACGAGAGACTACAGTCGAAGCGT
CGTAAACTATTGCACCCGTCGGACGCGTTTCCACCCAACGCCTCGCCGGG
GGCGTACCCCGTGATGGGCGTGCCTTGGTCAGGGTGCGCGGAGGAGGGGG
GTGACGTGGATTGGCGGGAGGAAATTTGGGTGGCGTCACTGCTGCCTGAC
CGCGATAATGCCGTAGTTTCTTTGGGGAATGAGGAGGAAGCGAACCCGTG
ATATGAATTGGGGGCGATACGAGGATAGATAACTGGAAAGACGGCGGCGG
GGGCACTGGATACGTGTGGGGGACGTGTTCGGAGATTTATTGATCGATGG
TTGCAAAATGTCGGGCGGTGGGCCGAGGCGAAACAATTTGTTGAAAGCGG
CATTGGCGGGAAGGACTTGTTGCTTTACCCTTGTGTTTCAGCACAGCTTC
AGCTACTGCAGCTGTATTCAAGGTAGTTCACACCGATCGGTTCTCCACAT
GCCAAGTAGGGATGTCCGCTCTCTGTTTATGTGTACAATATTGACGCAAA
AGGCGCATAATGGTGTGAAGAAGCATATTCGTGCTGTGTAGATCAGGCTT
CAGACAGCGGTTGAAGCTCATCTACACGTGGGTTCGTTCGAAACTGCTTT
GTCGGTGAAATTGTTTGCTTGAGCTTGATGTTGTCGACGACCGGCACCCA
TTTCCCTGCCCGCCGGCTGGTCGGCACGAAGGCTGCTTTTCTGGACAAAT
GGGCTGGCAGACATTTCCCCTATGTGTCACGCACATGATGCACATCAAAC
CGAGCCACTTCATGGCGTCTGTCGTGACGCGACTGACGGCGGAGTGGGTG
GGTCTTTTTCGTTGGCTGGTGAATGGAGGTGGAGCTAGCTGCTGCTCGCT
TGTCCTTGGTGAAGCAAAATACGGTCCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:315343..318872-

>mRNA_P-fluviatile_contig2.3679.1 ID=mRNA_P-fluviatile_contig2.3679.1|Name=mRNA_P-fluviatile_contig2.3679.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1176bp|location=Sequence derived from alignment at P-fluviatile_contig2:315343..318872- (Porterinema fluviatile SAG_2381)
ATGCAGCACACAGGCGCTGACCAGGGGCACCACATGGACCTATCAAGAAT
GAGACATTGCTTCGCTATCGGAGCCTTCGCGCTTGCAGCATTCGCCATGC
CTGGTCAGTTCGGTTGCGTAAGTGCCTTCCCCTCCACTCCGCTCGTCTCC
AGCTCAGAAGGCAGAACATTGAGATGCCGGCCAGCATGCCGCTTCCGACG
GAGGCGAGGTGACCAAGTGCTGTCACTGAGCGGGGAAGCGCTTGCGATCG
GAGCAGATGCAGCACACAGGCGCTGACCAGGGGCACCACATGGACCTATC
AAGAATGAGACATTGCTTCGCTATCGGAGCCTTCGCGCTTGCAGCATTCG
CCATGCCTGGTCAGTTCGGTTGCGTAAGTGCCTTCCCCTCCACTCCGCTC
GTCTCCAGCTCAGAAGGCAGAACATTGAGATGCCGGCCAGCATGCCGCTT
CCGACGGAGGCGAGGTGACCAAGTGCTGTCACTGAGCGGGGAAGCGCTTG
CGATCGGAGCAGTGGTTGCGGGGCTCACAACGGTTGCAGCGTGTCGAGGG
CTCTCAGCCCTTTCCGGAGCCTTCAGTCTTGCGGACTACCGAACAACAAG
TGGTTGCGGGGCTCACAACGGTTGCAGCGTGTCGAGGGCTCTCAGCCCTT
TCCGGAGCCTTCAGTCTTGCGGACTACCGAACAACAAGCGGGCACGACCT
TTGTCTGGACGAGAGACTACAGTCGAAGCGTCGTAAACTATTGCACCCGT
CGGACGCGTTTCCACCCAACGCCTCGCCGGGGGCGTACCCCGTGATGGGC
GTGCCTTGGTCAGGGTGCGCGGAGGAGGGGGGTGACGTGGATTGGCGGGA
GGAAATTTGGGTGGCGTCACTGCTGCCTGACCGCGATAATGCCGTAGTTT
CTTTGGGGAATGAGGAGGAAGCGAACCCGTGACGGGCACGACCTTTGTCT
GGACGAGAGACTACAGTCGAAGCGTCGTAAACTATTGCACCCGTCGGACG
CGTTTCCACCCAACGCCTCGCCGGGGGCGTACCCCGTGATGGGCGTGCCT
TGGTCAGGGTGCGCGGAGGAGGGGGGTGACGTGGATTGGCGGGAGGAAAT
TTGGGTGGCGTCACTGCTGCCTGACCGCGATAATGCCGTAGTTTCTTTGG
GGAATGAGGAGGAAGCGAACCCGTGA
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