mRNA_P-fluviatile_contig19.3598.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3598.1
Unique NamemRNA_P-fluviatile_contig19.3598.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig19.3598.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.590e-16
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 VEGEVRAGGCRGEEQSGVARSPTVPPHPSAGGLIPPPSRSATPSSAAPAPGVRLTAAHFRPRRGQ 198
            VEG   AGGCRGEEQSG+A SPT+PPH    G IP PSRS +  SA PAPGVRLTAAHFRPRR Q
Sbjct:  313 VEGGGAAGGCRGEEQSGLAPSPTIPPHTRDTGPIPHPSRSDS-QSAPPAPGVRLTAAHFRPRRTQ 376
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BLAST of mRNA_P-fluviatile_contig19.3598.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.560e-7
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   22 AGGCRGEEQSGVARSPTVPPHPSAGGLIPPPSRSATPS-SAAPAPGVRLTAAHFRPRRGQGR 204
            A G  G E+S + + PT PP   A   IP P  SATP+    PAPGV LTAAHFRPRRGQ R
Sbjct:  112 AAGDPGGERSAIVQPPTAPPPERATTPIPNPRSSATPALRPPPAPGVLLTAAHFRPRRGQER 173
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BLAST of mRNA_P-fluviatile_contig19.3598.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-6
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   22 AGGCRGEEQSGVARSPTVPPHPSAGGLIPPPSRSATPS-SAAPAPGVRLTAAHFRPRRGQGR 204
            A G  G E+S + + PT PP   A   IP P  SATP+    PAPGV LTAAHFRPRRGQ R
Sbjct:  359 AAGDPGGERSAIVQPPTAPPPERATTPIPNPRSSATPALRPPPAPGVLLTAAHFRPRRGQER 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYY8_ECTSI4.590e-1672.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4U0_9PHAE6.560e-756.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE1.900e-656.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:2031592..2031904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.3538306-CDS-P-fluviatile_contig19:2031591..20318011622815808.3538306-CDS-P-fluviatile_contig19:2031591..2031801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 2031592..2031801 +
1693563387.4012065-CDS-P-fluviatile_contig19:2031591..20318011693563387.4012065-CDS-P-fluviatile_contig19:2031591..2031801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 2031592..2031801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815808.3649588-UTR-P-fluviatile_contig19:2031801..20319041622815808.3649588-UTR-P-fluviatile_contig19:2031801..2031904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 2031802..2031904 +
1693563387.4112504-UTR-P-fluviatile_contig19:2031801..20319041693563387.4112504-UTR-P-fluviatile_contig19:2031801..2031904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 2031802..2031904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3598.1prot_P-fluviatile_contig19.3598.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 2031592..2031801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3598.1

>prot_P-fluviatile_contig19.3598.1 ID=prot_P-fluviatile_contig19.3598.1|Name=mRNA_P-fluviatile_contig19.3598.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=70bp
DVEGEVRAGGCRGEEQSGVARSPTVPPHPSAGGLIPPPSRSATPSSAAPA
PGVRLTAAHFRPRRGQGRA*
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mRNA from alignment at P-fluviatile_contig19:2031592..2031904+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3598.1 ID=mRNA_P-fluviatile_contig19.3598.1|Name=mRNA_P-fluviatile_contig19.3598.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=313bp|location=Sequence derived from alignment at P-fluviatile_contig19:2031592..2031904+ (Porterinema fluviatile SAG_2381)
GACGTTGAGGGGGAGGTGCGAGCGGGGGGTTGCCGAGGGGAGGAGCAATC
AGGTGTGGCTCGATCTCCCACTGTTCCACCTCACCCGAGTGCCGGCGGCC
TGATCCCGCCCCCTTCTCGCAGTGCCACGCCAAGTAGTGCTGCTCCAGCG
CCCGGCGTACGGTTGACCGCTGCTCACTTCAGACCGCGTAGGGGACAAGG
GAGGGCCTAGTAGTTGGACGACTCTTTACCTGTGTATGCATGGGCTTGTA
GATGCAAAAAAAAGGTTTACTGTGCGTGAAATTCCGCAGGAGGAGTGACT
TCGTCTGTGCTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig19:2031592..2031904+

>mRNA_P-fluviatile_contig19.3598.1 ID=mRNA_P-fluviatile_contig19.3598.1|Name=mRNA_P-fluviatile_contig19.3598.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=420bp|location=Sequence derived from alignment at P-fluviatile_contig19:2031592..2031904+ (Porterinema fluviatile SAG_2381)
GACGTTGAGGGGGAGGTGCGAGCGGGGGGTTGCCGAGGGGAGGAGCAATC
AGGTGTGGCTCGATCTCCCACTGTTCCACCTCACCCGAGTGCCGGCGGCC
TGATCCCGCCCCCTTCTCGCAGTGCCACGCCAAGTAGTGCTGCTCCAGCG
CCCGGCGTACGGTTGACCGCTGCTCACTTCAGACCGCGTAGGGGACAAGG
GAGGGCCTAGGACGTTGAGGGGGAGGTGCGAGCGGGGGGTTGCCGAGGGG
AGGAGCAATCAGGTGTGGCTCGATCTCCCACTGTTCCACCTCACCCGAGT
GCCGGCGGCCTGATCCCGCCCCCTTCTCGCAGTGCCACGCCAAGTAGTGC
TGCTCCAGCGCCCGGCGTACGGTTGACCGCTGCTCACTTCAGACCGCGTA
GGGGACAAGGGAGGGCCTAG
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