mRNA_P-fluviatile_contig19.3549.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3549.1
Unique NamemRNA_P-fluviatile_contig19.3549.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:1510488..1511242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size755
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3549.1prot_P-fluviatile_contig19.3549.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 1510596..1510997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.6359477-UTR-P-fluviatile_contig19:1510487..15105951622815786.6359477-UTR-P-fluviatile_contig19:1510487..1510595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1510488..1510595 +
1693563305.1022182-UTR-P-fluviatile_contig19:1510487..15105951693563305.1022182-UTR-P-fluviatile_contig19:1510487..1510595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1510488..1510595 +
1622815786.6610448-UTR-P-fluviatile_contig19:1510997..15112421622815786.6610448-UTR-P-fluviatile_contig19:1510997..1511242Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1510998..1511242 +
1693563305.1272502-UTR-P-fluviatile_contig19:1510997..15112421693563305.1272502-UTR-P-fluviatile_contig19:1510997..1511242Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1510998..1511242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.6477342-CDS-P-fluviatile_contig19:1510595..15109971622815786.6477342-CDS-P-fluviatile_contig19:1510595..1510997Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1510596..1510997 +
1693563305.113795-CDS-P-fluviatile_contig19:1510595..15109971693563305.113795-CDS-P-fluviatile_contig19:1510595..1510997Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1510596..1510997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3549.1

>prot_P-fluviatile_contig19.3549.1 ID=prot_P-fluviatile_contig19.3549.1|Name=mRNA_P-fluviatile_contig19.3549.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
MLPRDPAPCPPAPPSSEVHPPSLTAQVPPPPPSLPLSRPRSSLPKPPPPA
SSWSSSPSSWTQRWAAVRGASREWRRPVRARVRSSDNGSARVSLVATGDA
GGDAGEPPSRSPRRRRLLWPGRQAPNRSRKAWW*
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mRNA from alignment at P-fluviatile_contig19:1510488..1511242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3549.1 ID=mRNA_P-fluviatile_contig19.3549.1|Name=mRNA_P-fluviatile_contig19.3549.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=755bp|location=Sequence derived from alignment at P-fluviatile_contig19:1510488..1511242+ (Porterinema fluviatile SAG_2381)
GTCATCACCGCCGTCGCCGCCGTCAGTGACGCTGGGGATGACGCCGATCC
CAACCCCGTCAGGGGAGGGGAGGAGGCCGGAGAGACCCTGAGCCCCCGCA
GGCGCCGGATGCTACCCCGGGACCCGGCCCCGTGCCCGCCAGCCCCGCCG
TCGTCTGAGGTCCATCCGCCGTCTCTTACCGCCCAGGTTCCCCCCCCTCC
TCCTTCTCTTCCTCTTTCCCGCCCACGCTCGTCGCTGCCGAAGCCGCCTC
CTCCTGCCTCCTCGTGGTCTTCTTCGCCTTCGTCGTGGACCCAACGGTGG
GCGGCGGTTCGAGGGGCTTCGAGGGAGTGGCGCCGGCCTGTACGGGCGCG
GGTGCGGTCCAGCGACAACGGCTCAGCCCGCGTTTCCCTCGTGGCAACCG
GGGACGCCGGCGGGGACGCCGGCGAGCCACCGTCGCGGTCGCCGCGGCGG
CGTCGGTTGTTGTGGCCGGGACGGCAGGCCCCGAACAGATCGAGGAAGGC
GTGGTGGTGATCTTCGTGGTCCCCATTGTCATCGGTATCATCGCGATAGT
AGTCATCCTCGTCATGTCCGCTGCCGCTACCGCCAGCGCCAGCAAGGCCG
TCCTGAACGCTCCTTCTCTGGCCCTGCCCGCACTCTCCCGCTTCCTGCGA
GGCCGGCATACACGACGACGCCATCCCACCGACACCACCGCAAACGTTGG
CGCGGGGCGCTCCCTTCTCCTGGGTCGCCGCCGCGCGCGCTCCCGCCACC
GCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig19:1510488..1511242+

>mRNA_P-fluviatile_contig19.3549.1 ID=mRNA_P-fluviatile_contig19.3549.1|Name=mRNA_P-fluviatile_contig19.3549.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig19:1510488..1511242+ (Porterinema fluviatile SAG_2381)
ATGCTACCCCGGGACCCGGCCCCGTGCCCGCCAGCCCCGCCGTCGTCTGA
GGTCCATCCGCCGTCTCTTACCGCCCAGGTTCCCCCCCCTCCTCCTTCTC
TTCCTCTTTCCCGCCCACGCTCGTCGCTGCCGAAGCCGCCTCCTCCTGCC
TCCTCGTGGTCTTCTTCGCCTTCGTCGTGGACCCAACGGTGGGCGGCGGT
TCGAGGGGCTTCGAGGGAGTGGCGCCGGCCTGTACGGGCGCGGGTGCGGT
CCAGCGACAACGGCTCAGCCCGCGTTTCCCTCGTGGCAACCGGGGACGCC
GGCGGGGACGCCGGCGAGCCACCGTCGCGGTCGCCGCGGCGGCGTCGGTT
GTTGTGGCCGGGACGGCAGGCCCCGAACAGATCGAGGAAGGCGTGGTGGT
GAATGCTACCCCGGGACCCGGCCCCGTGCCCGCCAGCCCCGCCGTCGTCT
GAGGTCCATCCGCCGTCTCTTACCGCCCAGGTTCCCCCCCCTCCTCCTTC
TCTTCCTCTTTCCCGCCCACGCTCGTCGCTGCCGAAGCCGCCTCCTCCTG
CCTCCTCGTGGTCTTCTTCGCCTTCGTCGTGGACCCAACGGTGGGCGGCG
GTTCGAGGGGCTTCGAGGGAGTGGCGCCGGCCTGTACGGGCGCGGGTGCG
GTCCAGCGACAACGGCTCAGCCCGCGTTTCCCTCGTGGCAACCGGGGACG
CCGGCGGGGACGCCGGCGAGCCACCGTCGCGGTCGCCGCGGCGGCGTCGG
TTGTTGTGGCCGGGACGGCAGGCCCCGAACAGATCGAGGAAGGCGTGGTG
GTGA
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