mRNA_P-fluviatile_contig19.3544.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 418 bits (1075), Expect = 3.080e-135 Identity = 219/236 (92.80%), Postives = 228/236 (96.61%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPAA--QKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSANYKPG 785
MRLTAD+I+HARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLL CNNH+SKISE+LGT+LPNLSCLILTNNKLSTLAELKGL TC KLTMLSLLHNEVVNKQYYRLYMINL+PSLKQLDFQKVTVKERESA RLARSQAGQ M+QDVA+QAEKAKTFTPGAPAA QKLTDEHRAIYA+RIAKATTVEEIEMLSKKIQAGIIPSANYK G
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 236
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 240 bits (613), Expect = 3.910e-67 Identity = 132/228 (57.89%), Postives = 166/228 (72.81%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPAAQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 767
MRLTADVI+ ARAS+N ERELDLRG+KIP+IEN+GVTQDQFD +DFSDNEI+KLDNFPR RL++LL NN I++I +++G LPNLSCL+LTNN +S L+EL L C++LTMLSLL N V Q+YRLY+I+ +PSLK LDF KV +ER A RL +S AG+ M +D+A QA KTF PG A LT R I +A T EEI+ L + ++AGI P+
Sbjct: 1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 233 bits (594), Expect = 2.620e-65 Identity = 129/235 (54.89%), Postives = 170/235 (72.34%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPAAQ---KLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSANYK 779
MRLTADVI+ A A+INPC ERELDLRGYKIP+IEN+G TQD FD +DFSDNEIKKL+NFPR +RL++LLF NNHISKI+E + +PNLS L ++ LAEL L +KLT+LSLL N VV +Q+YRLY+I+ P+LK LDF+KV +ER+ AARL +S+AGQ M DV K+ KTF G + +LT++ + + E I ATT EE++ L ++++AGI+P+ K
Sbjct: 1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA) HSP 1 Score: 216 bits (551), Expect = 9.100e-61 Identity = 121/235 (51.49%), Postives = 159/235 (67.66%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGA-------PAAQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 767
+RLTADV HA +N C ERELDLRG KIP IEN+GVTQDQFD +DF+DNEIK++DNFP +KRLS+LL NNH++++S L LPNL CL L+E+ L C KLTMLS ++N ++ +Q+YRLY+I +P LK LDF KV ERE AA+L RS AG+LM QDV ++ KTFTPG P A LT E + IA A+T EE++ + ++++AG+IP+
Sbjct: 2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMAN-LTAEQKDQVRAVIAAASTPEEVDRIERQLKAGVIPT 232
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA) HSP 1 Score: 219 bits (558), Expect = 4.220e-60 Identity = 119/232 (51.29%), Postives = 163/232 (70.26%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAE----KAKTFTPGAPAAQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 767
MRLT+DV+++A A +NPC ERELDLRG KIP IEN+GVTQD +D +DF+DNEIKKL+NFP KRLS LL NNH+ I+ E+ +P+L L+LTNNK++ L+E+ LA C LT LSLL N V+ +Q+YR Y+I+ +P LK LDF K+ KER+ A RL RS AG+LM +DV K E +A+T T +L + RA IA A+T +EI+ + ++++AGI+P+
Sbjct: 1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMA---QLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPT 229
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR) HSP 1 Score: 208 bits (529), Expect = 2.930e-58 Identity = 120/239 (50.21%), Postives = 159/239 (66.53%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPAA--QKLTDEHRA---IYAERIAKATTVEEIEMLSKKIQAGIIPSANYKPG 785
++LTA++I A NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP KRL +LL NN I ++ E L SLP L+ LILTNN + L +L LAT K LT+LSLL N V NK++YRLYMIN +P ++ LDFQKV KER+ A ++ + + G + +D+AK + KTFTPG PA +K T +A IA A+++ E+E L +QAG IP + + G
Sbjct: 2 VKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM) HSP 1 Score: 208 bits (530), Expect = 3.370e-58 Identity = 122/237 (51.48%), Postives = 165/237 (69.62%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPAAQKLTDEH----------RAIYAERIAKATTVEEIEMLSKKIQAGIIP 764
++LT D+I + INP +RELDLRGYKIP+IENLG T DQFD +DFSDNEI++LDNFP RL +L F NN I +I + + SLPNL+ LILTNN L LA+L+ LA K LT LSL+ N V++K YRLY+I+ +P+L+ LDF+KV +KERE A +S+ G+ +++++ K+A AKTFTPGAP A + E+ R I A IA+ATT+EEIE L++ ++ G IP
Sbjct: 2 VKLTPDLIEGSAQYINPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKA-AIARATTLEEIERLNQMLRTGQIP 235
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA) HSP 1 Score: 208 bits (529), Expect = 4.820e-58 Identity = 121/233 (51.93%), Postives = 159/233 (68.24%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGA-----PAAQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 767
+RLTADV+ + A INPC +RELD+RG K+P IEN+GVT+DQ+D +DFSDNEIKKL+NFPR+ RLS+LL NNHI++IS LG L +L L+E+ L C KLT LSL++N V +Q+YRLY+I+ +PS+K LDF KV +ER AARL +S AG+LM QDV +A TFTPG P A T+E A IA ATT EE++ + ++++AGIIPS
Sbjct: 2 VRLTADVLQNCFARINPCLDRELDIRGLKVPAIENIGVTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKVKPQERADAARLFKSAAGKLMQQDVDAEAS---TFTPGEDMPSNPMAN-FTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPS 230
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: D6X367_TRICA (Putative U2 small nuclear ribonucleoprotein A'-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6X367_TRICA) HSP 1 Score: 207 bits (527), Expect = 7.220e-58 Identity = 116/232 (50.00%), Postives = 159/232 (68.53%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAPA-----AQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIP 764
++LTA++I ++ INP +RELDLRGY+IP +ENLG T DQFD +DFSDN+++KLD FP KRL LLF NN I +I E L +PNL LILT N L L +++ L T +KLT +SLLHN + +KQ+YRLY+I +P L+ LDF+KVT KERE A L +S+ G+ + +++ K +AKTF PG ++ LTDE A E I KA+++EE+E L K +Q+G IP
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEVENLGATGDQFDTIDFSDNDVRKLDGFPYLKRLKCLLFNNNRIVRIGEHLEEYIPNLETLILTGNHLEELGDIEPLCTLEKLTTVSLLHNPITSKQHYRLYLIYKLPQLRLLDFRKVTAKEREEARALFKSKKGKEIRKEIGK---RAKTFIPGGTGNSIAKSKGLTDEEIAKIREAINKASSLEEVERLQKILQSGQIP 230
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Match: UPI0019650BBE (U2 small nuclear ribonucleoprotein A' n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019650BBE) HSP 1 Score: 206 bits (523), Expect = 3.520e-57 Identity = 117/239 (48.95%), Postives = 158/239 (66.11%), Query Frame = 3
Query: 84 MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLFCNNHISKISEELGTSLPNLSCLILTNNKLSTLAELKGLATCKKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQLMMQDVAKQAEKAKTFTPGAP--AAQKLTDEHRA---IYAERIAKATTVEEIEMLSKKIQAGIIPSANYKPG 785
++LTA++I A NP +RELDLRGYKIP++ENLG + DQFD +DFSDNEI+KLD FP KRL +LLF NN + +I E L SLPNL L+LTNN + L +L LAT K LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV + ER+ A ++ + + G + +D+AK + KTFTPGA +K T A IA A+++ E+E L +Q+G IP + PG
Sbjct: 2 VKLTAEMIEQAAQYTNPVRDRELDLRGYKIPVVENLGASLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLFNNNRVCRIGESLEQSLPNLKELVLTNNNIQELGDLDTLATLKSLTLLSLLRNPVTNKKHYRLYVINKIPQVRVLDFQKVKLSERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGATLQVEKKKTGPSAADVEAIKNAIANASSLAEVERLKGLLQSGQIPGRDRMPG 237 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig19.3544.1 >prot_P-fluviatile_contig19.3544.1 ID=prot_P-fluviatile_contig19.3544.1|Name=mRNA_P-fluviatile_contig19.3544.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=473bp MRLTADVIVHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDback to top mRNA from alignment at P-fluviatile_contig19:1481488..1492031+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig19.3544.1 ID=mRNA_P-fluviatile_contig19.3544.1|Name=mRNA_P-fluviatile_contig19.3544.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10544bp|location=Sequence derived from alignment at P-fluviatile_contig19:1481488..1492031+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig19:1481488..1492031+ >mRNA_P-fluviatile_contig19.3544.1 ID=mRNA_P-fluviatile_contig19.3544.1|Name=mRNA_P-fluviatile_contig19.3544.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2838bp|location=Sequence derived from alignment at P-fluviatile_contig19:1481488..1492031+ (Porterinema fluviatile SAG_2381)back to top |