mRNA_P-fluviatile_contig19.3541.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3541.1
Unique NamemRNA_P-fluviatile_contig19.3541.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A6H5L6Y2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y2_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 2.230e-105
Identity = 201/378 (53.17%), Postives = 254/378 (67.20%), Query Frame = 3 
Query:  426 SWQEQFADLRNLVTDPWSAATRAADDRNSK-------------SVRTPTPTTDLWPIAKGGGAEEHSTTSYAAIPDTPPAPTSTRSPEAPADPAAAPLLSLPTNP----------AGGNAEDQAANLMQSRGESDSVAAHSAFLVLDAELAAAKDPSVTAL--SQSSVSRLSRSTAEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGLDVCG 1484
            SW+EQFA LRN   DPWSA++ +++  +               S+  PT T D     +G   +  +   ++  P       ++      A PA A                   +   AE +AA  M SRGESD+ AA  A+ +LDAEL AA   S      +++SV+ LSRS A ALLSWIR +TAGNGL++ D GK ATSDT E+R LW +HAPRVLQLVK+  EE +SDP LQQI+TEAVMYSV+++G++EA VSG+ALAFTSAM+VLVKK+PTQDNGVAFIFQGSY+LAAPWP+R+P KA   YEKA  +NGRSRRNVYY GLGRL+CGD++GA EMF RAVSD  CE+ASP+ERD+A ++R+QAQRGLD CG
Sbjct:  123 SWREQFASLRNDAADPWSASSSSSNVGDGXXXXXXXXXXXXXXSLAAPTETLDDG--IEGQAVDTSAGDDFSLAPR---GLVASDQDTTVATPAVAXXXXXXXXXXXXXXXXXEGSSKTAEKEAAEAMASRGESDTAAAQHAYRLLDAELTAAAAASHDGPPPTKASVATLSRSAAGALLSWIRCSTAGNGLIVADGGKAATSDTVERRELWGKHAPRVLQLVKESGEEPSSDPELQQIFTEAVMYSVATQGVVEAIVSGKALAFTSAMNVLVKKYPTQDNGVAFIFQGSYYLAAPWPLRSPTKARDSYEKAVNVNGRSRRNVYYAGLGRLACGDKRGAAEMFRRAVSDDQCENASPTERDVAVSLREQAQRGLDFCG 495
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: D8LSB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 9.790e-42
Identity = 89/156 (57.05%), Postives = 115/156 (73.72%), Query Frame = 3 
Query:  687 LPTNPAGGNAEDQAANLMQSRGESDSVAAHSAFLVLDAELAAAK-------DPSVTALSQSSVSRLSRSTAEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGE 1133
            +P + +   AE++AA  M SRGESD+ AA  A+ +LDAEL AA         P  T  S +++S LSRS A ALLSWIR +TAGNGL++ D GKVATSDT E+R LW +HAPRVLQLVK+  E+ +SDP LQQI+TEAVMYSV+++G++EA VSG+
Sbjct:    1 MPADGSSNTAEEEAAEAMASRGESDTAAAQRAYRLLDAELTAAAATAVSHDGPPPTTASVATLSTLSRSAAGALLSWIRCSTAGNGLIVADGGKVATSDTVERRELWGKHAPRVLQLVKESGEDPSSDPELQQIFTEAVMYSVATQGVVEAIVSGK 156
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A836CID7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.680e-33
Identity = 73/142 (51.41%), Postives = 98/142 (69.01%), Query Frame = 3 
Query:  867 RSTAEAL--LSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKA 1286
            R  +EAL  LSW+R+ T GNGL        +T D+   RA+WAEHAP++L+L+         D  + Q YTEA+MY  SS+GII    SG A AF +A+++LV ++P QDNGVAFIFQG+Y+LAAPWPV++ KKA+A +EKA
Sbjct:  103 RQESEALQKLSWLRAKTDGNGL----RHDCSTVDSPPYRAIWAEHAPKILELLPQSAAAAV-DGDMAQAYTEAIMYKTSSKGIISGIASGNAFAFLNAVEMLVSQYPQQDNGVAFIFQGAYYLAAPWPVKSAKKAVAAFEKA 239
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: W7TSV1_9STRA (Arginine-trna-protein transferase 1-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSV1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.390e-32
Identity = 76/201 (37.81%), Postives = 122/201 (60.70%), Query Frame = 3 
Query:  876 AEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGLDV 1478
            A+A +S +RS T  N ++I  DG    SD+KE R LW  +A     ++K++  +   +  +  + TEA  Y  SS+GI++A V+G+ L F   +D +V + PT D GV FIF+G++ LAAPWP+R+  KA+  +E A E+  RS RN +++G+     G  + AR+ F RAV  K  ES + +E D+A   R++++R L++
Sbjct:  120 ADASVSLLRSLTNANAVLI--DG---VSDSKENRKLWKTYAFEAYDILKELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERAVG-KDVESVAATEVDVAEFFRRESRRSLEM 314
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A0M0LQZ8_9EUKA (3-hydroxyisobutyryl-hydrolase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQZ8_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 9.350e-20
Identity = 71/208 (34.13%), Postives = 103/208 (49.52%), Query Frame = 3 
Query:  858 RLSRSTAEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGLDVC 1481
            RLS + A+AL + +R  T  N L I         DT E +A+W    PR L+L    ++    DP     Y +A  ++ S +G++ A V+G  L F      L+++ P  D GV   + G++FL APWP+ NPK+A      A  I   SRRN YY+G+     G    A   F +A+S K    AS SE D    + ++A+  LD C
Sbjct:  313 RLSLACAKALNAIMRIRTNSNTLHI-----TRLLDTPENKAVWRSLGPRALELATRAKKARPQDPEALVAYADAYFFANSVKGVLAAAVTGSGLEFKGNSKELIRRCPRADGGVGHCYLGAFFLMAPWPLCNPKRAEEHLSTAHRIVP-SRRNSYYMGVLHYRLGRPAEAERYFRQALSAK---CASASEADFGGFMLREAKAALDAC 511
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A1F9ESJ2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9ESJ2_9DELT)

HSP 1 Score: 100 bits (249), Expect = 9.670e-20
Identity = 83/245 (33.88%), Postives = 117/245 (47.76%), Query Frame = 3 
Query:  750 GESDSVAAHSAFLVLDAELAAAKDPSVTALSQSSVSRLSRSTAEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGLDVCG 1484
            G+ D+ +   A  + DAELA  K P            LS     +L + +R+ T GN  ++       TSDT   + +W E   R   L   V++    D        EA MY  SS GII+A +SG A  +    DV++      D+ V  I+ G++++ APWP+ + KKA   + KAA +  RS RN YYVGLG    GD   A   F  A  D  C   + SE D  +A++ QA+ GLD  G
Sbjct:   51 GKHDAKSFERAVAIFDAELA--KKPGDL--------DLSLKLCTSLNAVMRAKTQGNLALVN-----GTSDTPANKRIWGELGKRSHDLCTAVQKARPKDLETALQTAEAYMYLSSSMGIIQAVMSGAANQYKKNADVILALDKRADDDVGDIYHGAFYIVAPWPMNDVKKAREHFAKAAAVAPRSVRNRYYVGLGAYKDGDFATAEREFVFA-RDNPC--TTKSEIDFCSAIKAQAKLGLDEIG 277
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A7S4BN15_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BN15_CHRCT)

HSP 1 Score: 90.5 bits (223), Expect = 6.490e-16
Identity = 53/188 (28.19%), Postives = 94/188 (50.00%), Query Frame = 3 
Query:  915 GNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETT--SDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGL 1472
            G+G ++  DG +   DT   +  W  H PR L L +      +  SD        +A MY+ +S+GI++  ++G  + F    + LV K+   D+    ++ G ++L APWP+ + K+A++ Y++A ++   S+RN+YY+ L  +       A      AV   H +   P+E D  A +  +A+R L
Sbjct:  156 GDGNLVLIDGVL---DTPSNKQYWGTHGPRALALARAATSHASFASDARAAATEMDAFMYAAASKGILQQALTGTGVEFRKKSEHLVAKYTNWDSAAGHVYLGGFYLVAPWPLGDKKRAVSEYQRAVDLAPTSKRNLYYLCLAAMQTQQPARAASACEAAV---HAKCRGPTEPDYCARIDAEAKRVL 337
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A1Q9DS85_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DS85_SYMMI)

HSP 1 Score: 85.5 bits (210), Expect = 1.300e-14
Identity = 57/199 (28.64%), Postives = 93/199 (46.73%), Query Frame = 3 
Query:  876 AEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALWAEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGL 1472
            A+AL   +R  T GN L+I       T D++    +W E  P               +P    +Y +A  Y  S+ GI+   ++G    F      +    P ++ G+ FIF+G +++AAPWP+R+ K+AL    +A     + +RN YYVGL      + + A + F ++   K       SE D AA + ++AQ G+
Sbjct:   80 ADALNCVMRIKTNGNMLLIS-----GTQDSQSNIKVWKEVGPEAWDNANRALAALPKNPQAASVYADAFQYMSSAHGILRQALTGGGREFLRNAQRMQAVGPDEEGGLGFIFEGCFYIAAPWPLRDLKRALGLMRRAL-AQKKCKRNYYYVGLANYHLQNYEEAIDYFAKSADAK---PEFLSEFDFAAGLTQEAQHGI 269
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A7S2BPF7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPF7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.800e-14
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 3 
Query: 1089 SVSSRGIIEAFVSGEALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDIAAAVRKQAQRGLDVC 1481
            + SS+G+I    SG+      A+D L     T DNGVA+IF GS +LA P P+++  KA   + KA  I+  S RN+Y+  L  +  G  + A ++F R++      + S S+RD+ A +R+QA+ GL  C
Sbjct:    2 AASSKGLIRVATSGDLPKLEKAVDDLRDIDETYDNGVAWIFAGSNYLALPRPIKSADKARVRFRKAQGISSDSPRNLYFSALAAMEAGSVKQAAKLFQRSLD---APAVSTSDRDLEAFLREQAKAGLAKC 129
[Close]
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Match: A0A7S2HMX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMX9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.350e-14
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 3 
Query: 1131 EALAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKAAEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKH-CESASPSERDIAAAVRKQAQRGL 1472
            EA+AF  A+  +++ FP  D+GVAF+F+G+++ AAPWPVRN K A  C++KA      S RN Y  G+      D   A+  F  A+  K  C S+  ++ D+AA V ++A+ GL
Sbjct:    1 EAIAFKRAVRDMMQ-FPEWDDGVAFVFEGAFYAAAPWPVRNNKYACECFDKALAQQPLSSRNQYLRGVAAYDSNDYGTAKLKFEAAMEYKAPCSSSELTQVDVAAFVLREAKCGL 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L6Y2_9PHAE2.230e-10553.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSB7_ECTSI9.790e-4257.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CID7_9STRA1.680e-3351.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TSV1_9STRA4.390e-3237.81Arginine-trna-protein transferase 1-like protein n... [more]
A0A0M0LQZ8_9EUKA9.350e-2034.133-hydroxyisobutyryl-hydrolase n=1 Tax=Chrysochromu... [more]
A0A1F9ESJ2_9DELT9.670e-2033.88Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7S4BN15_CHRCT6.490e-1628.19Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1Q9DS85_SYMMI1.300e-1428.64Uncharacterized protein n=2 Tax=Symbiodinium micro... [more]
A0A7S2BPF7_9STRA1.800e-1436.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HMX9_9STRA9.350e-1440.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:1428436..1431953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2903.EOD10966
EggNOG OGs2D6NE@1,2T2FT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2142
Cds size1401
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3541.1prot_P-fluviatile_contig19.3541.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 1428522..1431249 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.5435321-UTR-P-fluviatile_contig19:1428435..14285211622815802.5435321-UTR-P-fluviatile_contig19:1428435..1428521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1428436..1428521 +
1693563356.2976773-UTR-P-fluviatile_contig19:1428435..14285211693563356.2976773-UTR-P-fluviatile_contig19:1428435..1428521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1428436..1428521 +
1622815802.6125648-UTR-P-fluviatile_contig19:1431249..14316131622815802.6125648-UTR-P-fluviatile_contig19:1431249..1431613Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1431250..1431613 +
1693563357.1319432-UTR-P-fluviatile_contig19:1431249..14316131693563357.1319432-UTR-P-fluviatile_contig19:1431249..1431613Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1431250..1431613 +
1622815802.622324-UTR-P-fluviatile_contig19:1431662..14319531622815802.622324-UTR-P-fluviatile_contig19:1431662..1431953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1431663..1431953 +
1693563357.1402829-UTR-P-fluviatile_contig19:1431662..14319531693563357.1402829-UTR-P-fluviatile_contig19:1431662..1431953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1431663..1431953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815802.5613408-CDS-P-fluviatile_contig19:1428521..14290471622815802.5613408-CDS-P-fluviatile_contig19:1428521..1429047Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1428522..1429047 +
1693563356.3088443-CDS-P-fluviatile_contig19:1428521..14290471693563356.3088443-CDS-P-fluviatile_contig19:1428521..1429047Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1428522..1429047 +
1622815802.5710318-CDS-P-fluviatile_contig19:1429250..14296931622815802.5710318-CDS-P-fluviatile_contig19:1429250..1429693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1429251..1429693 +
1693563356.3184094-CDS-P-fluviatile_contig19:1429250..14296931693563356.3184094-CDS-P-fluviatile_contig19:1429250..1429693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1429251..1429693 +
1622815802.580448-CDS-P-fluviatile_contig19:1430219..14302921622815802.580448-CDS-P-fluviatile_contig19:1430219..1430292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1430220..1430292 +
1693563357.1013117-CDS-P-fluviatile_contig19:1430219..14302921693563357.1013117-CDS-P-fluviatile_contig19:1430219..1430292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1430220..1430292 +
1622815802.5903506-CDS-P-fluviatile_contig19:1430595..14307591622815802.5903506-CDS-P-fluviatile_contig19:1430595..1430759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1430596..1430759 +
1693563357.1135738-CDS-P-fluviatile_contig19:1430595..14307591693563357.1135738-CDS-P-fluviatile_contig19:1430595..1430759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1430596..1430759 +
1622815802.5993857-CDS-P-fluviatile_contig19:1431054..14312491622815802.5993857-CDS-P-fluviatile_contig19:1431054..1431249Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1431055..1431249 +
1693563357.1235719-CDS-P-fluviatile_contig19:1431054..14312491693563357.1235719-CDS-P-fluviatile_contig19:1431054..1431249Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1431055..1431249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3541.1

>prot_P-fluviatile_contig19.3541.1 ID=prot_P-fluviatile_contig19.3541.1|Name=mRNA_P-fluviatile_contig19.3541.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=467bp
MISNRKARRSPCFMHAVVISLSRPPYTEGWLLVPPFGPETAGRQWFVTSP
TSHDACGARRPLYSISFPKRASIEALQEFSKDGNMGPSFPSDGASDVTAD
DAASRQAAGRRTASWQEQFADLRNLVTDPWSAATRAADDRNSKSVRTPTP
TTDLWPIAKGGGAEEHSTTSYAAIPDTPPAPTSTRSPEAPADPAAAPLLS
LPTNPAGGNAEDQAANLMQSRGESDSVAAHSAFLVLDAELAAAKDPSVTA
LSQSSVSRLSRSTAEALLSWIRSTTAGNGLVIGDDGKVATSDTKEKRALW
AEHAPRVLQLVKDVREETTSDPGLQQIYTEAVMYSVSSRGIIEAFVSGEA
LAFTSAMDVLVKKFPTQDNGVAFIFQGSYFLAAPWPVRNPKKALACYEKA
AEINGRSRRNVYYVGLGRLSCGDRQGAREMFGRAVSDKHCESASPSERDI
AAAVRKQAQRGLDVCG*
back to top

mRNA from alignment at P-fluviatile_contig19:1428436..1431953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3541.1 ID=mRNA_P-fluviatile_contig19.3541.1|Name=mRNA_P-fluviatile_contig19.3541.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3518bp|location=Sequence derived from alignment at P-fluviatile_contig19:1428436..1431953+ (Porterinema fluviatile SAG_2381)
AGCATATATCAGCTGTGCACGGGACGGTCACGGTCGAAAGCGAGCTCTCA
TCCGTGAAACAAACTTTCTAGAGACGCGTGAGTAAAATGATCTCGAACAG
AAAGGCGAGACGGTCGCCATGTTTCATGCACGCCGTCGTCATTTCTCTCT
CCCGCCCACCTTACACCGAGGGGTGGCTATTAGTACCTCCCTTCGGCCCT
GAGACAGCGGGACGGCAATGGTTTGTAACATCACCGACCAGTCACGACGC
ATGCGGTGCAAGACGACCCCTCTATTCCATCTCCTTTCCCAAGAGAGCAT
CAATTGAAGCTCTTCAGGAATTCAGTAAGGATGGAAACATGGGACCCTCG
TTCCCGTCGGACGGAGCGTCTGATGTCACAGCGGACGATGCTGCCAGCCG
ACAAGCGGCCGGCAGGAGAACGGCTTCTTGGCAAGAGCAGTTTGCTGATC
TTCGGAACCTCGTGACAGATCCCTGGAGTGCGGCGACGAGAGCTGCAGAC
GACAGAAACAGCAAGAGCGTCAGAACGCCGACCCCGACAACCGACCTTTG
GCCGATAGCCAAAGGCGGCGGTGCTGAAGAGCATTCTACGACGAGTTATG
CTGCGATTCCTGGTACGTGCGCCTTGGGTATCCATGACGAAGCACACAAT
AATTGTGACAGATATTTCGTCACAAGTTAGTACCAACCGTGGGGTGCTCT
TGATGGTCACCTTTCATGGTTTTGAGGTCCAAGAGGTCGTCAGTTGCCAT
CGTGCCTTGTACGCTGATCCCTTACGTTGGCCGCAACACGGCCCGTCGTC
ATTTTACCATTTCAGATACACCACCAGCACCAACGTCTACACGATCACCA
GAAGCTCCAGCAGACCCAGCAGCAGCACCTCTCTTATCACTACCAACAAA
TCCAGCGGGCGGCAACGCCGAGGACCAAGCGGCCAACCTCATGCAGTCGA
GGGGCGAAAGCGATTCGGTCGCCGCGCACAGCGCTTTCCTCGTGTTAGAC
GCCGAGCTCGCTGCCGCAAAGGACCCGTCGGTAACAGCATTATCTCAATC
CTCTGTTTCGCGCCTATCCCGATCAACGGCCGAGGCCCTCCTCTCCTGGA
TAAGGAGCACAACAGCGGGCAACGGCCTCGTGATTGGAGACGACGGCAAG
GTTGCGACGTCTGACACGAAGGAGAAGCGAGCTCTGTGGGCGGAACACGC
CCCCCGGGTGTTGCAGCTCGTGAAGGATGTCCGAGAGGAGACGACATCGG
ACCCGGGGGTTGGTCCACTCGTATCGTTTAGCACCCCCCTCTGACATATT
CTTGCTCTTTTTGCTCTCGGAGGATCTCTGACGGAGTCTAAGTAATAGCC
TTTTGTCGCGGTAGGCTTGAATCATGCGGTGCCATACCAACAATCGTGTC
TCTGCCTCTGCACTCTCGACCTCACCCTTTGAAACACTTGTGCAGTAAAC
CACATGCAGCTTTTTCATACGCTACCGCTGTTCTGCTGCTACGCCGAAAT
CCAACACGTTCTTGCATTGTCCCTCACCTTTTTTTTTACGGATGCATTGG
GAATGGTGCTATTACTTTCCTTGCGACTCGCTCCTCGCACTTGGTACCCA
CACGGCGCCTCTTCAAGTCAATCCCTTGAAGCCCCTCTCCTTGAAGCAGT
ACTGTATTCTGGCCTTCCCCTAACCATTCAATGTGCTGTCCCCTTTCTTT
GTCATGGCTTCTGTTATTTTTAAACTATCCTGCCACGCCCGGCCGTGTGC
ACCCCTCCCACCCGCGTCCATACTTGCTCCTCAGCTGCAACAGATCTACA
CGGAAGCTGTGATGTACTCCGTGAGTTCCCGCGGCATTATCGAGGCCTTT
GTTTCGGGTGAGAACAACGAGCAAGCAGGGGTGTGAGATTTTTTTTATCC
CTTCGCCTTGAAGGGCGGGGTTCCGCAATCGAGCTGCCGTATTGGTGCAG
AATACCGGAGCAAGCGTTACCGGCAAGGCACGATCTCCTTCACGATCGCG
TACGCCACGACGAGGATGTTGTAAGACGTATCATCTTCAGGGAAGAAAGG
CTTGAGCGTCGAGCAAGTGCAATTCTCGTCCATGCTTCTCGCCAGATGCG
AGAAGCAGTTGGAGAATTGGAGACTTACAGTGCCACCACATATCTCTTCC
GGCCTCGCAGGAGAAGCGTTGGCGTTCACTTCGGCCATGGACGTCCTGGT
CAAGAAATTCCCCACGCAGGATAATGGCGTGGCCTTCATATTCCAGGGAT
CCTACTTTCTGGCGGCGCCCTGGCCGGTCCGAAATCCGAAAAAGGCGCTG
GCGTGCTACGAAAAGGCTGCCGAAGTGAATACAGAATTGACGTGGGAAAA
GCGATTAACTGCCTGCCTAACCCTACATCAGCAAAATCACAGCTTGTTCG
CGCCTTCGCCTCTCTTTGCACCCGGCCCTCCGGTGACTCCTAGAATCGGC
AAGTTGACTTCCACTTAACTCTGGTTACGAAACGACGGCGCTTTGTGGGG
CAGTTAGTAGATCAACTGCACAGACAAGGACCCTGTAGCATGCCGAGGTA
CGCAAGGCATGCCCCACCTCCCCACCTTCAATTCCTCCCGTCTGCCCACT
CCATTACGCGCGCCCGCAGATTAACGGGCGGAGCCGAAGAAACGTGTACT
ACGTCGGTCTCGGACGGCTTTCTTGCGGAGATAGGCAGGGAGCCAGGGAA
ATGTTCGGTAGAGCCGTCTCCGACAAGCACTGCGAGAGCGCGTCGCCATC
TGAGAGAGATATAGCGGCCGCTGTGAGGAAGCAGGCCCAGAGGGGGCTGG
ACGTGTGCGGGTAGATTCTGCTGGGGCGACTACACAAAGGGTCGGGAGTA
ATACGGGTGTTTAGGAAACTTGAAGCGCTATTCGACGGTCAAGGCTGTGG
CGAGGATGTCAAGTACATTCAGAAGGTTTAGTGATACTTTCATGTGGTAT
GACGTCGTTTCAAATATGATGTGTCCGTTGCCAGCTGCAATCCATGAATC
TGTCAAAGTGCGCTACGGAAGAGTAGTCGTCCTTTACCCTCGTACTTTGC
TATAACCATGGCTTATTGAATGAGACATGCCTCGAATGTGTTGAGAATAG
ACGCATTCGGAGAAAGAGCGGCATGCTCAACCGCATTTGTGGTTCCGACC
CGCATGAATAGTGTATCGACTTACCCGCTACGTTGGTAGACGACCTCGCG
AAAAGGATTTCCCGCTTTCGTTGTGGTACTTTGGTGGGGGGGACGAAGCC
GGGTCGGGGTCGGCCGCCGCAGAATTGCGAGGTGGCGCGGAAGGACAACC
TCGAAATGCTGAAAGCTACGGCTGGGTCCACGGAGGACCGGCCGCTGATA
TTCGGGGTTCCCGGCGGCGACTGGAGGGTGGAAGCGAAGAGGGGGGGGAG
GGGCATGTGTTACAAGGGAGTGACGGAATCGGGCGCAAGGTTCATGGAAG
AAGAATGACACGTGAAGGAGGAAGAAATCAGCAGAGCCCGCGCGATCAAG
AGAGGCCAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig19:1428436..1431953+

>mRNA_P-fluviatile_contig19.3541.1 ID=mRNA_P-fluviatile_contig19.3541.1|Name=mRNA_P-fluviatile_contig19.3541.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2802bp|location=Sequence derived from alignment at P-fluviatile_contig19:1428436..1431953+ (Porterinema fluviatile SAG_2381)
ATGATCTCGAACAGAAAGGCGAGACGGTCGCCATGTTTCATGCACGCCGT
CGTCATTTCTCTCTCCCGCCCACCTTACACCGAGGGGTGGCTATTAGTAC
CTCCCTTCGGCCCTGAGACAGCGGGACGGCAATGGTTTGTAACATCACCG
ACCAGTCACGACGCATGCGGTGCAAGACGACCCCTCTATTCCATCTCCTT
TCCCAAGAGAGCATCAATTGAAGCTCTTCAGGAATTCAGTAAGGATGGAA
ACATGGGACCCTCGTTCCCGTCGGACGGAGCGTCTGATGTCACAGCGGAC
GATGCTGCCAGCCGACAAGCGGCCGGCAGGAGAACGGCTTCTTGGCAAGA
GCAGTTTGCTGATCTTCGGAACCTCGTGACAGATCCCTGGAGTGCGGCGA
CGAGAGCTGCAGACGACAGAAACAGCAAGAGCGTCAGAACGCCGACCCCG
ACAACCGACCTTTGGCCGATAGCCAAAGGCGGCGGTGCTGAAGAGCATTC
TACGACGAGTTATGCTGCGATTCCTGATGATCTCGAACAGAAAGGCGAGA
CGGTCGCCATGTTTCATGCACGCCGTCGTCATTTCTCTCTCCCGCCCACC
TTACACCGAGGGGTGGCTATTAGTACCTCCCTTCGGCCCTGAGACAGCGG
GACGGCAATGGTTTGTAACATCACCGACCAGTCACGACGCATGCGGTGCA
AGACGACCCCTCTATTCCATCTCCTTTCCCAAGAGAGCATCAATTGAAGC
TCTTCAGGAATTCAGTAAGGATGGAAACATGGGACCCTCGTTCCCGTCGG
ACGGAGCGTCTGATGTCACAGCGGACGATGCTGCCAGCCGACAAGCGGCC
GGCAGGAGAACGGCTTCTTGGCAAGAGCAGTTTGCTGATCTTCGGAACCT
CGTGACAGATCCCTGGAGTGCGGCGACGAGAGCTGCAGACGACAGAAACA
GCAAGAGCGTCAGAACGCCGACCCCGACAACCGACCTTTGGCCGATAGCC
AAAGGCGGCGGTGCTGAAGAGCATTCTACGACGAGTTATGCTGCGATTCC
TGATACACCACCAGCACCAACGTCTACACGATCACCAGAAGCTCCAGCAG
ACCCAGCAGCAGCACCTCTCTTATCACTACCAACAAATCCAGCGGGCGGC
AACGCCGAGGACCAAGCGGCCAACCTCATGCAGTCGAGGGGCGAAAGCGA
TTCGGTCGCCGCGCACAGCGCTTTCCTCGTGTTAGACGCCGAGCTCGCTG
CCGCAAAGGACCCGTCGGTAACAGCATTATCTCAATCCTCTGTTTCGCGC
CTATCCCGATCAACGGCCGAGGCCCTCCTCTCCTGGATAAGGAGCACAAC
AGCGGGCAACGGCCTCGTGATTGGAGACGACGGCAAGGTTGCGACGTCTG
ACACGAAGGAGAAGCGAGCTCTGTGGGCGGAACACGCCCCCCGGGTGTTG
CAGCTCGTGAAGGATGTCCGAGAGGAGACGACATCGGACCCGGGGATACA
CCACCAGCACCAACGTCTACACGATCACCAGAAGCTCCAGCAGACCCAGC
AGCAGCACCTCTCTTATCACTACCAACAAATCCAGCGGGCGGCAACGCCG
AGGACCAAGCGGCCAACCTCATGCAGTCGAGGGGCGAAAGCGATTCGGTC
GCCGCGCACAGCGCTTTCCTCGTGTTAGACGCCGAGCTCGCTGCCGCAAA
GGACCCGTCGGTAACAGCATTATCTCAATCCTCTGTTTCGCGCCTATCCC
GATCAACGGCCGAGGCCCTCCTCTCCTGGATAAGGAGCACAACAGCGGGC
AACGGCCTCGTGATTGGAGACGACGGCAAGGTTGCGACGTCTGACACGAA
GGAGAAGCGAGCTCTGTGGGCGGAACACGCCCCCCGGGTGTTGCAGCTCG
TGAAGGATGTCCGAGAGGAGACGACATCGGACCCGGGGCTGCAACAGATC
TACACGGAAGCTGTGATGTACTCCGTGAGTTCCCGCGGCATTATCGAGGC
CTTTGTTTCGGCTGCAACAGATCTACACGGAAGCTGTGATGTACTCCGTG
AGTTCCCGCGGCATTATCGAGGCCTTTGTTTCGGGAGAAGCGTTGGCGTT
CACTTCGGCCATGGACGTCCTGGTCAAGAAATTCCCCACGCAGGATAATG
GCGTGGCCTTCATATTCCAGGGATCCTACTTTCTGGCGGCGCCCTGGCCG
GTCCGAAATCCGAAAAAGGCGCTGGCGTGCTACGAAAAGGCTGCCGAAGA
GAAGCGTTGGCGTTCACTTCGGCCATGGACGTCCTGGTCAAGAAATTCCC
CACGCAGGATAATGGCGTGGCCTTCATATTCCAGGGATCCTACTTTCTGG
CGGCGCCCTGGCCGGTCCGAAATCCGAAAAAGGCGCTGGCGTGCTACGAA
AAGGCTGCCGAAATTAACGGGCGGAGCCGAAGAAACGTGTACTACGTCGG
TCTCGGACGGCTTTCTTGCGGAGATAGGCAGGGAGCCAGGGAAATGTTCG
GTAGAGCCGTCTCCGACAAGCACTGCGAGAGCGCGTCGCCATCTGAGAGA
GATATAGCGGCCGCTGTGAGGAAGCAGGCCCAGAGGGGGCTGGACGTGTG
CGGGTAGATTAACGGGCGGAGCCGAAGAAACGTGTACTACGTCGGTCTCG
GACGGCTTTCTTGCGGAGATAGGCAGGGAGCCAGGGAAATGTTCGGTAGA
GCCGTCTCCGACAAGCACTGCGAGAGCGCGTCGCCATCTGAGAGAGATAT
AGCGGCCGCTGTGAGGAAGCAGGCCCAGAGGGGGCTGGACGTGTGCGGGT
AG
back to top