mRNA_P-fluviatile_contig19.3443.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3443.1
Unique NamemRNA_P-fluviatile_contig19.3443.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig19.3443.1 vs. uniprot
Match: A0A6H5K102_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K102_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.860e-56
Identity = 101/124 (81.45%), Postives = 108/124 (87.10%), Query Frame = 2 
Query:   17 ADYLLLRELRRHSVWAAIELWEVSMSDSVVMAMQGGGARAERWLPESTMTGLAERFGENPAGRQLDVKLGQLAFLGHSMLTCGLPPSEVRSLLRKCSSLAMEIPPRDLEVLMATLNSFVTGSRP 388
            A YLLLRELRRH VWAAIELWEVSMSDSVVMAM+GGG RAERWL   T+  + ERFGE+ A RQLDVKLGQLAFLGHSMLTCG+PPSEVRSL+RKCSSLAME PPRDLE L ATLN+FV G RP
Sbjct: 1144 AGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGERAERWLTRDTLDAMGERFGEDAASRQLDVKLGQLAFLGHSMLTCGVPPSEVRSLVRKCSSLAMETPPRDLEALTATLNTFVVGPRP 1267
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BLAST of mRNA_P-fluviatile_contig19.3443.1 vs. uniprot
Match: D8LEI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI7_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 6.140e-55
Identity = 100/124 (80.65%), Postives = 107/124 (86.29%), Query Frame = 2 
Query:   17 ADYLLLRELRRHSVWAAIELWEVSMSDSVVMAMQGGGARAERWLPESTMTGLAERFGENPAGRQLDVKLGQLAFLGHSMLTCGLPPSEVRSLLRKCSSLAMEIPPRDLEVLMATLNSFVTGSRP 388
            A YLLLRELRRH VWAAIELWEVSMSDSVVMAM+GGGARAERWL   T+  + ERFGE+ A RQLDVKLGQLAFLGHSML CG+PPSE RSL+RKCSSLAMEIP RDLE L ATLN+FV G RP
Sbjct:  873 AGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGARAERWLTRDTLDAMRERFGEDAASRQLDVKLGQLAFLGHSMLACGVPPSEGRSLVRKCSSLAMEIPSRDLEALTATLNTFVMGPRP 996
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K102_9PHAE1.860e-5681.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEI7_ECTSI6.140e-5580.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:537285..538639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D8LEI7
EggNOG OGs28IQT@1,2QR23@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size832
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3443.1prot_P-fluviatile_contig19.3443.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 537375..538551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.347945-UTR-P-fluviatile_contig19:537284..5373741622815783.347945-UTR-P-fluviatile_contig19:537284..537374Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 537285..537374 -
1693563300.8077826-UTR-P-fluviatile_contig19:537284..5373741693563300.8077826-UTR-P-fluviatile_contig19:537284..537374Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 537285..537374 -
1622815783.3906877-UTR-P-fluviatile_contig19:538551..5386391622815783.3906877-UTR-P-fluviatile_contig19:538551..538639Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 538552..538639 -
1693563301.0662134-UTR-P-fluviatile_contig19:538551..5386391693563301.0662134-UTR-P-fluviatile_contig19:538551..538639Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 538552..538639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.3577201-CDS-P-fluviatile_contig19:537374..5378361622815783.3577201-CDS-P-fluviatile_contig19:537374..537836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 537375..537836 -
1693563300.82087-CDS-P-fluviatile_contig19:537374..5378361693563300.82087-CDS-P-fluviatile_contig19:537374..537836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 537375..537836 -
1622815783.3669176-CDS-P-fluviatile_contig19:538066..5381681622815783.3669176-CDS-P-fluviatile_contig19:538066..538168Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 538067..538168 -
1693563301.038181-CDS-P-fluviatile_contig19:538066..5381681693563301.038181-CDS-P-fluviatile_contig19:538066..538168Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 538067..538168 -
1622815783.37678-CDS-P-fluviatile_contig19:538461..5385511622815783.37678-CDS-P-fluviatile_contig19:538461..538551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 538462..538551 -
1693563301.0562208-CDS-P-fluviatile_contig19:538461..5385511693563301.0562208-CDS-P-fluviatile_contig19:538461..538551Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 538462..538551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3443.1

>prot_P-fluviatile_contig19.3443.1 ID=prot_P-fluviatile_contig19.3443.1|Name=mRNA_P-fluviatile_contig19.3443.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=218bp
MSDSVVMAMQGGGARAERWLPESTMTGLAERFGENPAGRQLDVKLGQLAF
LGHSMLTCGLPPSEVRSLLRKCSSLAMEIPPRDLEVLMATLNSFVTGSRP
GTPRTGRAGPRSGTASLADGGQDPAAGAARAMARAAADGELALSSGGGED
GCDGDGDGDADADTDADSDGAASSSSGGRSSSSDGSDGNGRSHGSESSYD
LGSPLSGHSQHSEEGGQ*
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mRNA from alignment at P-fluviatile_contig19:537285..538639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3443.1 ID=mRNA_P-fluviatile_contig19.3443.1|Name=mRNA_P-fluviatile_contig19.3443.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1355bp|location=Sequence derived from alignment at P-fluviatile_contig19:537285..538639- (Porterinema fluviatile SAG_2381)
GGGGGCGGCGGCGGGAGCGGATTATCTGCTGCTGAGGGAGCTCAGGCGTC
ACTCGGTCTGGGCGGCAATCGAGCTGTGGGAGGTGTCGATGTCGGATTCC
GTAGTTATGGCGATGCAAGGAGGTGGGGCGAGGGCGGAGCGCTGGCTTCC
GGAGTCGACCATGACGGGGCTTGCAGAGGTAAAAGGCGCACGTTAATGAC
CACACTATATGCTGCTGCTGCCGTTGATGCTGGTGCTGCTAGTGCTGCCG
CTGCTTGCGCAGGTTGTTGTGGCTGCTGCTTTTCTACTAGTGGGAGCAGG
TCGTCGCCTGAATTTCGCTTCTCGTGGAGGCGTGTTCTGGCTGCTCGCGA
CAGCAGTGCTTCCTCTTCGCTCCGGCACCTGCTCTTGTCATCAAAACCCG
CCGGGAACATGTGCGCTCATTTTCCTTTATTTTTGTGTCGATCCCATTTT
TTTTTTTTTCGTATCCTGCAGCGCTTCGGAGAGAATCCAGCGGGTCGGCA
ATTGGACGTGAAGCTTGGCCAGCTGGCGTTTCTGGGGCACTCGATGCTGA
CGTGCGGCCTTCCGCCATCAGAAGTGCGTCCCATGTTGGTACACAACGTC
TCCCTGCTCACCAAAACCACCCAACGTTCGTCCAAACGCGCAGATTGTTT
GATGGCTGCACAGGATATCTCGACCCCCACCTCCCTTCCCCTTACTTACG
TAACGCGTCCCCCTTAGAGCGAGCAGAGATGTGATGTTTACATCTCATTT
CACCGGCTCCACGCGCGGTTGCCGCCTTGCCTCGTGCGTGGATGGGTGCG
CAGGTCCGATCGCTGCTGCGCAAGTGTTCGAGCCTGGCGATGGAGATACC
TCCGCGGGATCTGGAGGTTCTGATGGCGACTCTGAATTCTTTCGTGACGG
GGTCGAGGCCGGGTACGCCTCGGACAGGGCGAGCGGGACCCCGAAGTGGG
ACTGCGTCATTGGCGGATGGGGGGCAGGACCCGGCCGCGGGGGCTGCGCG
CGCCATGGCGAGGGCCGCCGCGGACGGGGAGTTGGCATTGTCGTCAGGCG
GTGGCGAAGACGGGTGTGATGGTGATGGTGATGGTGATGCTGACGCTGAT
ACTGATGCTGACAGTGACGGTGCCGCCAGCAGCAGCAGCGGCGGGAGGTC
GAGCAGCAGCGATGGCAGCGACGGCAACGGCAGGAGTCACGGCTCTGAGT
CATCGTACGACCTGGGTTCGCCGCTATCCGGACACAGCCAACACAGCGAG
GAGGGGGGTCAGTGAAGCCGCCGCGGAGTGAAGTCGCGCCGTGGGCTCGA
GTGGGTTCTCTCGAAAGGCATGCTGCAGCGTTTGCTGTGTGGAAGTGGAC
GGCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig19:537285..538639-

>mRNA_P-fluviatile_contig19.3443.1 ID=mRNA_P-fluviatile_contig19.3443.1|Name=mRNA_P-fluviatile_contig19.3443.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1308bp|location=Sequence derived from alignment at P-fluviatile_contig19:537285..538639- (Porterinema fluviatile SAG_2381)
ATGTCGGATTCCGTAGTTATGGCGATGCAAGGAGGTGGGGCGAGGGCGGA
GCGCTGGCTTCCGGAGTCGACCATGACGGGGCTTGCAGAGATGTCGGATT
CCGTAGTTATGGCGATGCAAGGAGGTGGGGCGAGGGCGGAGCGCTGGCTT
CCGGAGTCGACCATGACGGGGCTTGCAGAGCGCTTCGGAGAGAATCCAGC
GGGTCGGCAATTGGACGTGAAGCTTGGCCAGCTGGCGTTTCTGGGGCACT
CGATGCTGACGTGCGGCCTTCCGCCATCAGAACGCTTCGGAGAGAATCCA
GCGGGTCGGCAATTGGACGTGAAGCTTGGCCAGCTGGCGTTTCTGGGGCA
CTCGATGCTGACGTGCGGCCTTCCGCCATCAGAAGTCCGATCGCTGCTGC
GCAAGTGTTCGAGCCTGGCGATGGAGATACCTCCGCGGGATCTGGAGGTT
CTGATGGCGACTCTGAATTCTTTCGTGACGGGGTCGAGGCCGGGTACGCC
TCGGACAGGGCGAGCGGGACCCCGAAGTGGGACTGCGTCATTGGCGGATG
GGGGGCAGGACCCGGCCGCGGGGGCTGCGCGCGCCATGGCGAGGGCCGCC
GCGGACGGGGAGTTGGCATTGTCGTCAGGCGGTGGCGAAGACGGGTGTGA
TGGTGATGGTGATGGTGATGCTGACGCTGATACTGATGCTGACAGTGACG
GTGCCGCCAGCAGCAGCAGCGGCGGGAGGTCGAGCAGCAGCGATGGCAGC
GACGGCAACGGCAGGAGTCACGGCTCTGAGTCATCGTACGACCTGGGTTC
GCCGCTATCCGGACACAGCCAACACAGCGAGGAGGGGGGTCAGTGAGTCC
GATCGCTGCTGCGCAAGTGTTCGAGCCTGGCGATGGAGATACCTCCGCGG
GATCTGGAGGTTCTGATGGCGACTCTGAATTCTTTCGTGACGGGGTCGAG
GCCGGGTACGCCTCGGACAGGGCGAGCGGGACCCCGAAGTGGGACTGCGT
CATTGGCGGATGGGGGGCAGGACCCGGCCGCGGGGGCTGCGCGCGCCATG
GCGAGGGCCGCCGCGGACGGGGAGTTGGCATTGTCGTCAGGCGGTGGCGA
AGACGGGTGTGATGGTGATGGTGATGGTGATGCTGACGCTGATACTGATG
CTGACAGTGACGGTGCCGCCAGCAGCAGCAGCGGCGGGAGGTCGAGCAGC
AGCGATGGCAGCGACGGCAACGGCAGGAGTCACGGCTCTGAGTCATCGTA
CGACCTGGGTTCGCCGCTATCCGGACACAGCCAACACAGCGAGGAGGGGG
GTCAGTGA
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