mRNA_P-fluviatile_contig19.3401.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3401.1
Unique NamemRNA_P-fluviatile_contig19.3401.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: D8LEX4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.680e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLRIRTIYDSKLIEYDN+RHLG
Sbjct:  192 ISAVKRQLRIRTIYDSKLIEYDNDRHLG 219
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A0A067D1P2_SAPPC (H/ACA ribonucleoprotein complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1P2_SAPPC)

HSP 1 Score: 54.7 bits (130), Expect = 1.620e-5
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLRIRTIY SKLIEYDNERHLG
Sbjct:  166 ISAVKRQLRIRTIYSSKLIEYDNERHLG 193
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: UPI001425A116 (H/ACA ribonucleoprotein complex subunit DKC1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A116)

HSP 1 Score: 54.3 bits (129), Expect = 2.250e-5
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RT+YDSKLIEYD+ERHLG
Sbjct:  178 ISAVKRQLRVRTVYDSKLIEYDSERHLG 205
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A0A161HNA9_9ASCO (H/ACA ribonucleoprotein complex subunit CBF5 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A161HNA9_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 3.000e-5
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RTIYDSKLIE+DN+RHLG
Sbjct:  165 ISAVKRQLRVRTIYDSKLIEFDNDRHLG 192
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A0A8J5BYY3_9ASCO (H/ACA ribonucleoprotein complex subunit CBF5 n=3 Tax=unclassified Yarrowia TaxID=2630442 RepID=A0A8J5BYY3_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 3.010e-5
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RTIYDSKLIE+DN+RHLG
Sbjct:  162 ISAVKRQLRVRTIYDSKLIEFDNDRHLG 189
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A0A7S1C716_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C716_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.020e-5
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLRIRTIY SKL+EYDNERHLG
Sbjct:  183 ISAVKRQLRIRTIYSSKLLEYDNERHLG 210
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A0A2D4CBX7_PYTIN (H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBX7_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 4.080e-5
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLRIRTIYDSKLIEYD +RHLG
Sbjct:  185 ISAVKRQLRIRTIYDSKLIEYDQDRHLG 212
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: A8DRZ1_9BILA (Dyskerin (Fragment) n=3 Tax=Saccoglossus TaxID=10222 RepID=A8DRZ1_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 4.970e-5
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RTIY+SKL+EYD ERHLG
Sbjct:   33 ISAVKRQLRVRTIYESKLLEYDEERHLG 60
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: Q6C609_YARLI (H/ACA ribonucleoprotein complex subunit CBF5 n=3 Tax=Yarrowia lipolytica TaxID=4952 RepID=Q6C609_YARLI)

HSP 1 Score: 53.1 bits (126), Expect = 5.510e-5
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RTIYDSKL+E+DN+RHLG
Sbjct:  162 ISAVKRQLRVRTIYDSKLLEFDNDRHLG 189
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BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Match: F2U5R5_SALR5 (Centromere/microtubule-binding protein cbf5 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5R5_SALR5)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-5
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = -2 
Query:  461 ISAVKRQLRIRTIYDSKLIEYDNERHLG 544
            ISAVKRQLR+RTIY+SKL+EYDN+RHLG
Sbjct:  164 ISAVKRQLRVRTIYESKLLEYDNDRHLG 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LEX4_ECTSI6.680e-696.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067D1P2_SAPPC1.620e-596.43H/ACA ribonucleoprotein complex subunit 4 n=4 Tax=... [more]
UPI001425A1162.250e-589.29H/ACA ribonucleoprotein complex subunit DKC1-like ... [more]
A0A161HNA9_9ASCO3.000e-589.29H/ACA ribonucleoprotein complex subunit CBF5 n=1 T... [more]
A0A8J5BYY3_9ASCO3.010e-589.29H/ACA ribonucleoprotein complex subunit CBF5 n=3 T... [more]
A0A7S1C716_9STRA3.020e-592.86Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4CBX7_PYTIN4.080e-592.86H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=... [more]
A8DRZ1_9BILA4.970e-585.71Dyskerin (Fragment) n=3 Tax=Saccoglossus TaxID=102... [more]
Q6C609_YARLI5.510e-585.71H/ACA ribonucleoprotein complex subunit CBF5 n=3 T... [more]
F2U5R5_SALR55.540e-585.71Centromere/microtubule-binding protein cbf5 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:86576..87120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3401.1prot_P-fluviatile_contig19.3401.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 86670..86975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.463868-UTR-P-fluviatile_contig19:86575..866691622815785.463868-UTR-P-fluviatile_contig19:86575..86669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 86576..86669 +
1693563304.7058828-UTR-P-fluviatile_contig19:86575..866691693563304.7058828-UTR-P-fluviatile_contig19:86575..86669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 86576..86669 +
1622815785.4901035-UTR-P-fluviatile_contig19:86975..871201622815785.4901035-UTR-P-fluviatile_contig19:86975..87120Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 86976..87120 +
1693563304.7290099-UTR-P-fluviatile_contig19:86975..871201693563304.7290099-UTR-P-fluviatile_contig19:86975..87120Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 86976..87120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.477424-CDS-P-fluviatile_contig19:86669..869751622815785.477424-CDS-P-fluviatile_contig19:86669..86975Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 86670..86975 +
1693563304.716864-CDS-P-fluviatile_contig19:86669..869751693563304.716864-CDS-P-fluviatile_contig19:86669..86975Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 86670..86975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3401.1

>prot_P-fluviatile_contig19.3401.1 ID=prot_P-fluviatile_contig19.3401.1|Name=mRNA_P-fluviatile_contig19.3401.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MAHSMKLHVCAPTSTFPCPPREHARVSQHRHFDLAKARRATCRPSATTYR
PKTCYCCGCWRRSSKTIGFEPTAHCCRSCNQTIRSASFRPLDQSQLTDST
V*
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mRNA from alignment at P-fluviatile_contig19:86576..87120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3401.1 ID=mRNA_P-fluviatile_contig19.3401.1|Name=mRNA_P-fluviatile_contig19.3401.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=545bp|location=Sequence derived from alignment at P-fluviatile_contig19:86576..87120+ (Porterinema fluviatile SAG_2381)
AAGTGCCAAACGACTGGATCATGAAATGCTTGTCTCAGAACACTGCGGGC
GGTCCAATGAAGTGCCTGTCGAACGACTGTTGCCATGATGATTGATGGCG
CATAGCATGAAACTTCACGTCTGTGCTCCAACATCTACATTCCCATGTCC
ACCTCGTGAACATGCCCGCGTATCGCAGCACCGCCATTTTGACCTAGCAA
AAGCACGACGAGCAACTTGCCGGCCCTCCGCCACGACCTACAGGCCGAAA
ACCTGCTACTGCTGCGGGTGCTGGAGAAGAAGCTCAAAGACAATAGGATT
CGAACCAACAGCGCACTGTTGCAGAAGCTGCAATCAAACGATCAGATCAG
CCAGCTTCAGACCATTAGACCAGTCACAGCTGACTGATTCAACGGTTTGA
TTTCAGCTTCTTTGCATAGCATCTCGTGTTTATTCTCGCGGGTGGGCGCC
TTCTTCTCTGACCTAGGTGGCGCTCATTGTCATACTCGATCAGCTTGCTG
TCGTAGATTGTTCGGATCCGCAACTGCCGTTTCACGGCGGAGATG
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Coding sequence (CDS) from alignment at P-fluviatile_contig19:86576..87120+

>mRNA_P-fluviatile_contig19.3401.1 ID=mRNA_P-fluviatile_contig19.3401.1|Name=mRNA_P-fluviatile_contig19.3401.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig19:86576..87120+ (Porterinema fluviatile SAG_2381)
ATGGCGCATAGCATGAAACTTCACGTCTGTGCTCCAACATCTACATTCCC
ATGTCCACCTCGTGAACATGCCCGCGTATCGCAGCACCGCCATTTTGACC
TAGCAAAAGCACGACGAGCAACTTGCCGGCCCTCCGCCACGACCTACAGG
CCGAAAACCTGCTACTGCTGCGGGTGCTGGAGAAGAAGCTCAAAGACAAT
AGGATTCGAACCAACAGCGCACTGTTGCAGAAGCTGCAATCAAACGATCA
GATCAGCCAGCTTCAGACCATTAGACCAGTCACAGCTGACTGATTCAACG
GTTTGAATGGCGCATAGCATGAAACTTCACGTCTGTGCTCCAACATCTAC
ATTCCCATGTCCACCTCGTGAACATGCCCGCGTATCGCAGCACCGCCATT
TTGACCTAGCAAAAGCACGACGAGCAACTTGCCGGCCCTCCGCCACGACC
TACAGGCCGAAAACCTGCTACTGCTGCGGGTGCTGGAGAAGAAGCTCAAA
GACAATAGGATTCGAACCAACAGCGCACTGTTGCAGAAGCTGCAATCAAA
CGATCAGATCAGCCAGCTTCAGACCATTAGACCAGTCACAGCTGACTGAT
TCAACGGTTTGA
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