mRNA_P-fluviatile_contig18.3379.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3379.1
Unique NamemRNA_P-fluviatile_contig18.3379.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 1.730e-161
Identity = 235/273 (86.08%), Postives = 251/273 (91.94%), Query Frame = 1
Query:   88 MKSAVMAVACASGVQGFVSPNLAVNSRVAPSAPKTTMMAEVPGSWWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAA 906
            MKSAVMA AC S    FV+P+L V+SRVA SAPKTTMMAEVPGSWWTPSDG+KS ALPWADKP+IGDG + GDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQ+PVGF+GF+FAPEFTQMNAFAALSSVPRLGLAQIV+ CSLIEVASFTGNLT KY YEDDLTK EL+ K  GKT +LAGAAKIA V+ NKDQVFE+TV+PGDLGFDPLGLAANGINPDY LAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA+
Sbjct:    1 MKSAVMAAACVSSASAFVAPSL-VSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA)

HSP 1 Score: 260 bits (665), Expect = 9.520e-78
Identity = 146/295 (49.49%), Postives = 187/295 (63.39%), Query Frame = 1
Query:   88 MKSAVMAVACASGVQGFVSPNLAVNSRVA-PSAPKTTMMAEVP--------------GSWWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANK-----DQVFEE--TVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAA 906
            MK+A +A+    GV  + +P++    +    +AP  +  A  P              G+W+   D + S +LPW  KPVIGDG + GD GFDPL+L+    D+ WLR AELKHGR+CMLA VG+V PELVQ+PVGF+GF F  EFTQMNA AAL +VP+ GLAQIVL C LIE+A+F  N  S + YED L+  E    E  +  FL G AK  S + NK     +  FE+  +   GDLGFDPLGLAANG+  DY LAE+KHARLAMIG LGM + Q  +P+ GVL+Q ++WAA
Sbjct:    1 MKAAAVALVACGGVAAYQAPSMVFGKKSGGAAAPAKSAKAAGPPAFLRETEPGQGAAGAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTS-NINKFGNALEVGFEKPGSDNAGDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWAA 293          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.570e-72
Identity = 128/223 (57.40%), Postives = 156/223 (69.96%), Query Frame = 1
Query:  229 PSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETVVP----GDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLE 885
            P DG  S ALPW+DKPVIGDGTLAGD GFDP NL++    L WLR AELKHGR+CMLA VG+VAPEL Q+P+GF G  FAPEFT+MNAF AL++ P LGLAQI+LFC L+E+ +F       + Y+D LTK E    + G  +FL G AK A  +    +    T V     GD+GFDPLG A NG+NPDY LAELKH R+AM+G LGM +QQ+  P+ G+LE
Sbjct:   62 PVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA)

HSP 1 Score: 243 bits (619), Expect = 5.730e-71
Identity = 141/299 (47.16%), Postives = 183/299 (61.20%), Query Frame = 1
Query:   88 MKSAVMAVACASGVQGFVSPNLAV-------------NSRVAPSAPKTTMMAEV-PGS-----WWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKI-ASVSANK-----DQVFE--ETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA 903
            MK+AV+ ++   G Q F++PN  V              ++   +A     + EV PGS     W+   D + S ALPW  +P IGDG+L GD GFDP  L+    D+ WLR AELKHGR+ MLA +GMV PELVQ P GF GF FAPEF+++NA  ALS+VP LGLAQI+L  S +EVA+F+     ++ +ED+LT  E +   QG+   L+GAAK  A    N      D  F+  E  VPGDLGFDP+G   NGINPDY LAE+KHARLAM+G  GM +Q+ + P G +L Q + WA
Sbjct:    1 MKTAVLFLSGLVGAQAFLTPNARVPAATKMEAIKAGKGAKAGKAATANNYLKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA)

HSP 1 Score: 236 bits (603), Expect = 9.520e-69
Identity = 124/229 (54.15%), Postives = 151/229 (65.94%), Query Frame = 1
Query:  214 GSWWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFE-----ETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLE 885
            G W   +    S+ALPW+DKPVIGDG LAGD GFDP  L+     L WLR AE+KHGR+CMLA VG++APELVQNPVG+ G  F P F +MNAF AL +VP LGLAQIVL   L+E+ S   N    + ++D LT  E    + G  +FL G AK A  +  K + FE     E V PGDLGFDPLG A +GI P++  AE+KHARLAM+G LGM +QQA  P  G+LE
Sbjct:   56 GQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSK-FETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC)

HSP 1 Score: 221 bits (562), Expect = 1.060e-62
Identity = 117/237 (49.37%), Postives = 157/237 (66.24%), Query Frame = 1
Query:  214 GSWWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEV--ASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEE-----TVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA 903
            G W+   D + S ALPW  +P IGDG L GD GFDP  L+    ++ WLR AELKHGR+CMLA VG++APELVQ P GF G DF P F++++ + AL+++P  G+AQI++  +LIE+  A +  N T+K    D LT +E    + G T+FLAG A  A +    ++  EE     + VPGDLG+DPLGLA NGI  D+ LAE+KHARLAMIG LGM +Q  ++PN  +L+Q + WA
Sbjct:   62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELTTAKYLYNPTTKIKLAD-LTLRERALVQTGNTRFLAGGA-FAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC)

HSP 1 Score: 208 bits (530), Expect = 2.260e-58
Identity = 118/232 (50.86%), Postives = 151/232 (65.09%), Query Frame = 1
Query:  229 PSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEV--ASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETV----VPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAA 906
            PSD S   ALPW  KP IGDGTL GD GFDPL L+   AD+ +LR AELKHGR+CMLA VG++APELVQ P GF+G +F P F++MN F AL ++P  GL QI++  +LIE+  A F  + + K    D   K+ L   + G T+FLAG+A+    S   + V E++     VPGDLGFDPLGLA  GI  D+ LAE+KH RLAM+  LGM +Q    P+ G+LE   +W A
Sbjct:   49 PSDVSL--ALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELNTAKFLWDPSMKMRITDMSEKERLLV-QTGNTRFLAGSARPQLASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDWLA 276          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE)

HSP 1 Score: 177 bits (448), Expect = 1.480e-46
Identity = 101/231 (43.72%), Postives = 129/231 (55.84%), Query Frame = 1
Query:  214 GSWWTPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAA 906
            G+W+   D   S++ PW  K  I DGTLAGD GFDPL L+    D  W+RTAELKHGRI MLACVG++ PEL+  P GF G +F P F  +    AL   P LG+ QI L  +LIE        T KY       K  + Y +     ++    K +      D+ FE+   PG +GFDP G A NGI  D+  AE+KHARLAM+G  GM +Q  + P+  +LEQ   WAA
Sbjct:   84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQ------TLKYV------KNPMEYLQP----YMDKGIKFS------DEYFEKRT-PGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWAA 290          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A7S1TMR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMR6_9RHOD)

HSP 1 Score: 133 bits (335), Expect = 4.350e-32
Identity = 82/220 (37.27%), Postives = 113/220 (51.36%), Query Frame = 1
Query:  241 SKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNW 900
            +KS+A+P+ +KP   DG+LAGDAGFDPL L+    +L +LR AELKHGRICMLA +G V  E+V+ P         P F + +A  A+  VP     QI+ F S+IE+ +F  N                                           ++++  PGD GFDPL L  +G+   Y+L E+K+ RLAMI F+G   QQ V   G V+EQ  N+
Sbjct:   31 AKSQAIPFLEKPDTLDGSLAGDAGFDPLRLSKY-LNLKYLRAAELKHGRICMLATLGWVVQEIVRLP--------GPMFQEKHALQAIYKVPLASWVQIIAFISIIELVTFRSN-------------------------------------------YDDSSAPGDYGFDPLNLGKSGVIERYQLNEIKNGRLAMIAFMGFLFQQLVTGQG-VIEQLANF 197          
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT)

HSP 1 Score: 131 bits (330), Expect = 6.000e-31
Identity = 93/227 (40.97%), Postives = 112/227 (49.34%), Query Frame = 1
Query:  226 TPSDGSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQNPVGFNGFDFAPEF--TQMNAFAALSSVPRLGLAQIVLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIASVSANKDQVFEETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNW 900
            T S    S ++P+A KP   DGTL GD GFDPL L+N   D+ WLR AE+KHGR+ MLA  G     LVQ      G    PE   T      ALS+ P LGLAQIV    LIE+ + +  L +   YED                 L   A   S              PGDLG+DPLGL+A G+N DY +AELKH RLAM+G  GM     V     + EQ  +W
Sbjct:   41 TASPVEYSASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGF----LVQEGYRLPGPASNPELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDSPN--------------LKAPAGSGS--------------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLAGSLVSGKS-ISEQTYDW 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU7_ECTSI1.730e-16186.08Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z6C4_9STRA9.520e-7849.49Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A7S1XTT1_9STRA2.570e-7257.40Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TZB5_9STRA5.730e-7147.16Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U4N3_9STRA9.520e-6954.15Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4G8I9_VITBC1.060e-6249.37Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FH94_VITBC2.260e-5850.86Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HNT2_9ALVE1.480e-4643.72Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S1TMR6_9RHOD4.350e-3237.27Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A8J6CE65_DIALT6.000e-3140.97Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:2658753..2663137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue6.3e-26
Seed eggNOG ortholog2880.D8LKC5
Preferred nameLHCA1
KEGG koko:K08907
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0019904,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs28MEX@1,2QTYF@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001730.1
Exons2
Model size2157
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3379.1prot_P-fluviatile_contig18.3379.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 2660001..2663050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.6579015-UTR-P-fluviatile_contig18:2658752..26600001622815780.6579015-UTR-P-fluviatile_contig18:2658752..2660000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2658753..2660000 -
1693563296.5494545-UTR-P-fluviatile_contig18:2658752..26600001693563296.5494545-UTR-P-fluviatile_contig18:2658752..2660000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2658753..2660000 -
1622815780.6999533-UTR-P-fluviatile_contig18:2663050..26631371622815780.6999533-UTR-P-fluviatile_contig18:2663050..2663137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2663051..2663137 -
1693563296.582542-UTR-P-fluviatile_contig18:2663050..26631371693563296.582542-UTR-P-fluviatile_contig18:2663050..2663137Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2663051..2663137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.6760094-CDS-P-fluviatile_contig18:2660000..26607071622815780.6760094-CDS-P-fluviatile_contig18:2660000..2660707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2660001..2660707 -
1693563296.563039-CDS-P-fluviatile_contig18:2660000..26607071693563296.563039-CDS-P-fluviatile_contig18:2660000..2660707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2660001..2660707 -
1622815780.6905196-CDS-P-fluviatile_contig18:2662935..26630501622815780.6905196-CDS-P-fluviatile_contig18:2662935..2663050Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2662936..2663050 -
1693563296.5735464-CDS-P-fluviatile_contig18:2662935..26630501693563296.5735464-CDS-P-fluviatile_contig18:2662935..2663050Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2662936..2663050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3379.1

>prot_P-fluviatile_contig18.3379.1 ID=prot_P-fluviatile_contig18.3379.1|Name=mRNA_P-fluviatile_contig18.3379.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=274bp
MKSAVMAVACASGVQGFVSPNLAVNSRVAPSAPKTTMMAEVPGSWWTPSD
GSKSEALPWADKPVIGDGTLAGDAGFDPLNLANGPADLVWLRTAELKHGR
ICMLACVGMVAPELVQNPVGFNGFDFAPEFTQMNAFAALSSVPRLGLAQI
VLFCSLIEVASFTGNLTSKYAYEDDLTKQELRYKEQGKTQFLAGAAKIAS
VSANKDQVFEETVVPGDLGFDPLGLAANGINPDYELAELKHARLAMIGFL
GMAVQQAVDPNGGVLEQFMNWAA*
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mRNA from alignment at P-fluviatile_contig18:2658753..2663137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3379.1 ID=mRNA_P-fluviatile_contig18.3379.1|Name=mRNA_P-fluviatile_contig18.3379.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4385bp|location=Sequence derived from alignment at P-fluviatile_contig18:2658753..2663137- (Porterinema fluviatile SAG_2381)
CCACTCGCTTCGAGGACGCTCCCAATCACACACGCACACCCGCAAGACAC ACCTTCCCCTCTCTGCCTAACTCTCTTTTGGCCGAAGATGAAGTCCGCTG TAATGGCCGTTGCCTGCGCCTCCGGCGTTCAGGGCTTTGTATCACCGAAC CTTGCGGTGAACTCGCGCGTTGCTCCTTCCGCACCGAAGACCACCATGAT GGGTAAGTTTAGTTTGCTTGTACATGCGGGAGAGGTGAAGACTAGGCGTG CATGCACTGTCGTGTTGCCGTCGGACCACGACAGCTGGCGGGAATATGCC CAACTAAGCCTCTCTCAAACTCTCTTCGCGCACGCCCTGTAGGCTCAACC AATACTCTGTGCCGATCTGCGTGTCTCGTATGACGACACGGTGTGCGGTG CTGACTCAAAATCTCCCTCATGACGAAACATCCGCCGTCTCTCTCGCTTC CGCGGAGCGCATCGGTTGGGTCGCAGGACCTCTTGGTCGCGGTGCGATCT TGCTGGCAAGGGGAGCGCGAAGTCGATCCGCTGTTGTCGTTCTTAATCCA AACACTTCCTTCTCAACCTTGCGACCTGCTCCCATTTCACCTCCTTCTCT GTGTCGACAACAAACCGAGCTTACTTTTTCAACACGGCGACGGTGCCCCC CCCCCCTGTCTTTCCCGTCATCATGTAGGCACTGAATAGGTCATGTTGCT CATGTTAAACAACCTGGGGCGGAGAGCCTTGAGAGCCCCGCGGCACAATG GGGGGGAAGTACTTCTTTTTTTATCATGTGGGGAATCACGGTTGACGATA TGTGTAGGTGCTTGTGGCTTGTTGCAGTTCCCCCCTCCCCGCAAGTGTCA TTCTTTGTCCCTTTTTCTTCACTTCTGCATTTTTCATAGTTCGAGTTCAT CTGTGGTACCCCACCCATTTCAGGACATGTCACAATGTTTCACGAGGTTC CATGTAGCACTGGCAGCATTCGGGTTTTTCCCCTGTTGCTGGCTCGGCCG CTACCTTAGCTCTCCAAGTCGTATCCATGGCTCAAGTTGCTGCGTTCCTG CGGAGCAGAGGAGCGCGTAACGAGATGTGCATCGCGTGCTCCATCCGCGA TTTGAAACATTACACTCCTTAATTGGTTGATCTTGCGATTTTTCATTTCC GCTTCCGCGGTGAAATGGTAATGCTTTTGACCCTTGCCAAATTGCCTCAC AACAATGAGTGCTACCTCGCCACAAATATGCGCTGTATTCGACACCGTTG ACAGCCCACGGCTTCATGCACCACCGCCGGGTAGTCAGGGGGGCAGCATG CCTATTATTGTTAAGTCGTGGAGGCCATTGGCCACGCTCCTCACACAGCA TGCGTGACTTCGTTCACAATTCGGCTGAGGCAATTTTGGCGCTCTTTGCG TCTTGCCGAAAAATGCAAAGAGCGTGTTTTGCTAAGAGTCAAAATATTTA ACAATTAATTTGTCCCCACATGATCTATTTCATTCAGTTCTTGCTCCGTT TGAGATGCAAACAAGTCACCGTCGTGATCTGCAGAGGCCGAGATGACTTC GATATTGTGAAGGCAAACTCAGCAGAAAGATACAAAAGCCACACATATCG CTCCCCCTTCACCCTACTCCTTTGTCACGGTGCACCGATCTCTGCCTGTC TGGCGTGCGTTTTGAATGAAGTGTGGCACACATTCCCCTCCTTTTTTCCC ATCTCTAAACGGGCACGGCAACAGAGTGAAGCGACGTTTTGATCGGACGA TCTCCCTCCGACGGAACAAAACTTGAGCAAAAATGCCGTTTAAATATTGA CGAGCTGCTCAAGGTTTCACCAATCAGGGGAGACATGTTTTGCAGACTCA TTTGACTCGCTCCTAGACATGTCCTGCTTGTGAACCAGTCCTCAACGTCG ACAGCTGCCGATGGTCTTCATCCACGATTAATGCAGCACATGTTACCGGC GAGGTTAAGGCTTCACATTCCTTTATCAAAACGCCACCGTCGTTCCCACG AGCTGTTCGCCGTTGTTTCTCACCGCCGAAACACGTTGCAAGTGAATCAG GCGGTGGCAAGATACGCCATGCGGCGCCCATGTTGGAAATTCCCACGCCA CTACGAAGCTGTGTTGCCTAGTATGCGTCCCTCTGGTACGCTGAGGTTCG TCTTACAGCAGCTCAATATGCGGGCCTTGACGTCCTTATTTGATGTTGGG GTTCACGTGGTTTCCCCTCGGCATGATTTGTAAAGGACCGATGAGATCAG CTCAGACTCCCGACGTAACAAACTGTGTCATATTTCGGAGCATTGCTGAA ATCATTTCGCACAAGCAAGGATTGAGATCGACAACATCCAGAGATCCACG CTGTCATGCTTTACTCACGAACCAGCTCCCATTGTTCAACCGTCCCCCGT GCTTGTTCGTCTTTTTTCGTGCCTGCGCAGCCGAGGTACCAGGATCGTGG TGGACCCCGTCCGACGGCTCAAAGTCCGAGGCCCTCCCTTGGGCGGACAA GCCGGTCATCGGCGATGGAACGCTTGCAGGTGACGCCGGCTTTGACCCCC TGAACTTGGCCAACGGACCGGCGGACCTCGTCTGGCTCCGGACAGCAGAG CTCAAGCACGGGCGTATCTGCATGCTTGCGTGTGTGGGCATGGTCGCCCC CGAGCTCGTCCAGAATCCGGTTGGCTTCAACGGGTTCGACTTTGCGCCGG AGTTCACCCAGATGAACGCGTTCGCGGCGCTGTCCTCGGTGCCGCGACTC GGCCTTGCACAGATCGTTCTGTTCTGCTCGCTAATCGAGGTGGCCTCCTT CACGGGAAACCTCACCTCCAAGTACGCGTACGAGGACGATTTGACGAAGC AGGAGCTCAGGTACAAGGAGCAGGGCAAAACGCAGTTCCTCGCGGGCGCG GCTAAGATCGCCTCGGTCTCGGCCAACAAGGACCAGGTCTTTGAAGAGAC CGTTGTCCCTGGGGACCTCGGCTTCGACCCCCTCGGCCTTGCGGCCAACG GCATCAACCCTGACTACGAGCTAGCGGAGCTCAAGCATGCCCGCCTCGCG ATGATCGGCTTCCTCGGCATGGCCGTGCAGCAGGCGGTGGACCCCAACGG TGGCGTGCTCGAGCAGTTCATGAACTGGGCGGCTTAGACGATGACGACCG TTTTCAATTTCTTAACTCTGTCCATCTTTAGATGGCGGTGCAGGCGAGCA TACGTATCGGCCAAGTTTGGGGGAGTTGGCGGCAGACGGCAAACCTGGTG CGGGTTCCTTTGTGCCTGATCGGTTGGTGCTTCCCCCCCCCGGCCAATGT TGGCTTGTGACCAATCGGGTGCAGTGACCGCTCTTTTCGTTTCAGGAACG TTGAGAGTCGCCGTCAGCGAGCGAACGCGTAGGTAAGCAGCGCGATGGTT GATCAATGAAAACAAACGGATATGGCCGGGCTGTTTTCCGAGCCTTGTTC TATTGTTACTCCACCTGCCTCGAATAATGTGCAGGCGTATCAAGCAAGGA TACGCCTGTCAAACTGTCGATCGTGTAGACGGAAACGCGCGCTCTCGGGG GGGGGGGCTGGCATTCGCAGCATTGTGAAACTTTTTGAGCAATTACATAA CACGGAGGCCGTAGCTTCCTCAAAGGTTGTCGTCCCCCCACACCCGTTCT TATGTTCCTGTTTACGCAAGGGCAGGATGCGAGAGGTTCAACGGCATCAG AAGCCGTGATGTATCTCTTTCTTCGTAATTTTCGAAAAAAATCTTCTCAG TAGTTTTGTGGGGGGGCTTCGGTATTTGCTTCTGTTCAACTCTGAGGGTC ATGTGGCTGATGAGGCAGTGCGAGTACGTCACAGCCATTGCCAAGCAGAC CAGTGTTAAGCGTTCTTGGCGACTGTGGGCAGATTGTCTCGCCGTTCGGT GGCGTCCATCCGTGGGTTGCGCCGATGCTATTTACTTTCACTACGAGTCA TCTGCCGTGGGCTGACGCTGCGTTCTTCGCCAGGGTGCGATGTGGCAAAT TCGAGAGTTGTTTGTTCTACAGGCCCCTCGAATTTCATGTGTCAAAAAGA TCGCCCATATCAAAAAAGGGATTTCTAGTTTGCCGGGAGCATGTCCACAA ATGAAGGTTAAGTTGGACATGAGGAAACTCGGCTTAGTTTTTAGTGTGTT GCAAGTGGGATGAAACTGAGCACTGAGCACTCATCGTCATGAAATGTGAA ATGCAGCGGACATTCTACAAGATAATGGCTCGTGTGTCTGATGTATTCTT TCCTGATCGAGCATCCTCGAGGAACGTAATCTTTCGCTTAGTTCCTCCAC CCTTCCATCTTTCATTACACTGCGGACATCAAAACTTTGTACAAAAACAG GGTCCACTCGCCAAAATGAGTGGGACGGTTGGGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:2658753..2663137-

>mRNA_P-fluviatile_contig18.3379.1 ID=mRNA_P-fluviatile_contig18.3379.1|Name=mRNA_P-fluviatile_contig18.3379.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1644bp|location=Sequence derived from alignment at P-fluviatile_contig18:2658753..2663137- (Porterinema fluviatile SAG_2381)
ATGAAGTCCGCTGTAATGGCCGTTGCCTGCGCCTCCGGCGTTCAGGGCTT
TGTATCACCGAACCTTGCGGTGAACTCGCGCGTTGCTCCTTCCGCACCGA
AGACCACCATGATGGATGAAGTCCGCTGTAATGGCCGTTGCCTGCGCCTC
CGGCGTTCAGGGCTTTGTATCACCGAACCTTGCGGTGAACTCGCGCGTTG
CTCCTTCCGCACCGAAGACCACCATGATGGCCGAGGTACCAGGATCGTGG
TGGACCCCGTCCGACGGCTCAAAGTCCGAGGCCCTCCCTTGGGCGGACAA
GCCGGTCATCGGCGATGGAACGCTTGCAGGTGACGCCGGCTTTGACCCCC
TGAACTTGGCCAACGGACCGGCGGACCTCGTCTGGCTCCGGACAGCAGAG
CTCAAGCACGGGCGTATCTGCATGCTTGCGTGTGTGGGCATGGTCGCCCC
CGAGCTCGTCCAGAATCCGGTTGGCTTCAACGGGTTCGACTTTGCGCCGG
AGTTCACCCAGATGAACGCGTTCGCGGCGCTGTCCTCGGTGCCGCGACTC
GGCCTTGCACAGATCGTTCTGTTCTGCTCGCTAATCGAGGTGGCCTCCTT
CACGGGAAACCTCACCTCCAAGTACGCGTACGAGGACGATTTGACGAAGC
AGGAGCTCAGGTACAAGGAGCAGGGCAAAACGCAGTTCCTCGCGGGCGCG
GCTAAGATCGCCTCGGTCTCGGCCAACAAGGACCAGGTCTTTGAAGAGAC
CGTTGTCCCTGGGGACCTCGGCTTCGACCCCCTCGGCCTTGCGGCCAACG
GCATCAACCCTGACTACGAGCTAGCGGAGCTCAAGCATGCCCGCCTCGCG
ATGATCGGCTTCCTCGGCATGGCCGTGCAGCAGGCGGTGGACCCCAACGG
TGGCGTGCTCGAGCAGTTCATGAACTGGGCGGCTTAGCCGAGGTACCAGG
ATCGTGGTGGACCCCGTCCGACGGCTCAAAGTCCGAGGCCCTCCCTTGGG
CGGACAAGCCGGTCATCGGCGATGGAACGCTTGCAGGTGACGCCGGCTTT
GACCCCCTGAACTTGGCCAACGGACCGGCGGACCTCGTCTGGCTCCGGAC
AGCAGAGCTCAAGCACGGGCGTATCTGCATGCTTGCGTGTGTGGGCATGG
TCGCCCCCGAGCTCGTCCAGAATCCGGTTGGCTTCAACGGGTTCGACTTT
GCGCCGGAGTTCACCCAGATGAACGCGTTCGCGGCGCTGTCCTCGGTGCC
GCGACTCGGCCTTGCACAGATCGTTCTGTTCTGCTCGCTAATCGAGGTGG
CCTCCTTCACGGGAAACCTCACCTCCAAGTACGCGTACGAGGACGATTTG
ACGAAGCAGGAGCTCAGGTACAAGGAGCAGGGCAAAACGCAGTTCCTCGC
GGGCGCGGCTAAGATCGCCTCGGTCTCGGCCAACAAGGACCAGGTCTTTG
AAGAGACCGTTGTCCCTGGGGACCTCGGCTTCGACCCCCTCGGCCTTGCG
GCCAACGGCATCAACCCTGACTACGAGCTAGCGGAGCTCAAGCATGCCCG
CCTCGCGATGATCGGCTTCCTCGGCATGGCCGTGCAGCAGGCGGTGGACC
CCAACGGTGGCGTGCTCGAGCAGTTCATGAACTGGGCGGCTTAG
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