mRNA_P-fluviatile_contig18.3266.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3266.1
Unique NamemRNA_P-fluviatile_contig18.3266.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: D7G4M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M9_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 7.630e-136
Identity = 210/229 (91.70%), Postives = 219/229 (95.63%), Query Frame = 1 
Query:  202 QMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKV---PAEDKVAE 879
            QMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAA L GLA+T ASF+EYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATET+R+IK DVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGF+MVFQSKMTPFKRWV+PERV+KYV FFGPGVDAEVIKVDAQEKLVAIKLTTLPPG QP+PKV   PAE+ VAE
Sbjct:   73 QMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETIRSIKSDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFTMVFQSKMTPFKRWVEPERVEKYVAFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGAQPTPKVTAPPAEETVAE 301
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A835YHW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW7_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.330e-87
Identity = 151/224 (67.41%), Postives = 176/224 (78.57%), Query Frame = 1 
Query:  217 GPSQWAGGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAA 888
            GP+Q + GGINVSGEAPFEIRGFSL NA  + G+ +T+ASF EYF++GGAG LSG+GFVYGIP+ALIGLALKYAEL P  + +TP A ALFEEKATETMR IKKDVTRHRYGDEAHLD+TVK LGLV+PQSDYPQLQ + + + PNGEL FSM+F S  TPFK WV P RV+KY  FFGPGV A V KV ++ +LVAIKLTT+      +P  P E+  A  AA
Sbjct:   70 GPAQISAGGINVSGEAPFEIRGFSLGNAFLIGGVVITTASFAEYFTSGGAG-LSGLGFVYGIPVALIGLALKYAELAPVGVSSTPAAAALFEEKATETMRKIKKDVTRHRYGDEAHLDSTVKALGLVLPQSDYPQLQGLKEEVAPNGELAFSMIFSSPETPFKMWVDPARVRKYTTFFGPGVTASVEKVSSEARLVAIKLTTV------NPDAPTEEPSAAAAA 286
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A7S2V4E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E2_9STRA)

HSP 1 Score: 271 bits (692), Expect = 3.460e-82
Identity = 141/212 (66.51%), Postives = 173/212 (81.60%), Query Frame = 1 
Query:  238 GGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTT----LPPGVQPSPKVPA 861
            GGIN+SGE PFEIRGFSL +A   VG+AVT+ SF E+F + G+ GLSGIGFVYGIPIAL+GL+LKYAEL P P++TTPEAEALFEEKATET++ IK DVTRHRYGDEAHL++TVK LGLVMPQS+YPQLQ++ + +E +GE  FSMVFQSK TPFK W +P ++ K+  FFGPGV+AEV+KV+  E+LVAIKLTT    +PP    + + PA
Sbjct:    8 GGINLSGEPPFEIRGFSLGDAFLGVGVAVTAISFTEFFMSAGSEGLSGIGFVYGIPIALVGLSLKYAELAPVPVRTTPEAEALFEEKATETIKKIKSDVTRHRYGDEAHLESTVKALGLVMPQSEYPQLQWLDEGVE-DGEYTFSMVFQSKETPFKVWNEPAKIPKFETFFGPGVNAEVVKVNGAERLVAIKLTTGEKKVPPAATETEEAPA 218
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A7R9UF83_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF83_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.650e-75
Identity = 123/200 (61.50%), Postives = 159/200 (79.50%), Query Frame = 1 
Query:  223 SQWAGGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTT 822
            +Q A GGIN SG+ PFEIRGFSLA      G  +T  SF EYFS GG  G+SG+GFVYGIP+ LIGL+LKYAE+PP  + TTP A+  FE+KATET++ IK+DVTRHRYGD+AHLD+T+K LGL +PQ D+P+L+Y+ Q + PNGEL FSMVF+S  TP++ W +P+R+++Y  FFGPGV+AEV K+ ++E+LVAIKLTT
Sbjct:   50 AQVAAGGINTSGKPPFEIRGFSLATLFLGGGFLLTVGSFAEYFSEGGGSGVSGLGFVYGIPVLLIGLSLKYAEIPPVEVVTTPAADDAFEKKATETIKQIKQDVTRHRYGDDAHLDSTLKALGLQLPQKDFPELEYLKQDVAPNGELAFSMVFRSMETPYRMWAEPDRIKRYETFFGPGVNAEVEKISSEERLVAIKLTT 249
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A7S1U5M2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5M2_9STRA)

HSP 1 Score: 254 bits (648), Expect = 4.950e-75
Identity = 129/221 (58.37%), Postives = 165/221 (74.66%), Query Frame = 1 
Query:  226 QWAGGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAA 888
            Q A GGIN SGE PFEIRGFSLA +  + G  +T ASF EYF+ GG  GL GIGFVYGIP+ LIGL+LKYAEL P  + +TP+ EA FE KATET++ IK+DVTRHRYGD+AHLD+T+K LGL +PQ ++P L+Y+ +     GEL FSMVF+S  TP+K W + +RV++Y  FFGPG++AEV+KV+A+E+LVAIKLTT     +P    PA  + AE +A
Sbjct:   55 QVAAGGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLKYAELAPVEVVSTPQGEAAFEAKATETLKKIKQDVTRHRYGDDAHLDSTLKSLGLQLPQKEFPTLEYLQEETTNEGELAFSMVFRSPETPYKIWAEEDRVKRYETFFGPGLNAEVVKVNAEERLVAIKLTTGEKPAEPKAAEPAPKEAAEESA 275
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A8J9X6Z0_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6Z0_PHATR)

HSP 1 Score: 240 bits (612), Expect = 2.500e-70
Identity = 129/222 (58.11%), Postives = 158/222 (71.17%), Query Frame = 1 
Query:  235 GGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGL--SGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAAPP 894
            G G+N +GE PFEIRGFSL N     G+ +T ASF EY S  G  GL  SG+GFVYGIP+ L G ALKYAE+ P P+ TTP AE +F+ KAT+T+  IK+DVTRHRYGDEAHLDTTVK LGLV+P   YPQLQ + Q    +GEL F+MV+QS  TP+K W  P RV KY KFFGPGV A+V+K+DA+++LV I+LTT   G +P    P ED+    +APP
Sbjct:   12 GAGVNNAGEPPFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPVATTPAAERVFDRKATDTILKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLQELRQDEVNDGELAFTMVWQSVDTPYKMWADPRRVLKYEKFFGPGVYADVVKIDAEQRLVGIRLTT---GTRP----PVEDQDTSTSAPP 226
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A4D9DHB4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHB4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.730e-69
Identity = 129/219 (58.90%), Postives = 164/219 (74.89%), Query Frame = 1 
Query:  238 GGINVSG-EAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAAP 891
            GG N+ G + PFE+RGFSLA  A  VG  +T  S  EY  + G+ GLSG+GFVYGIPI LIGL+L+YA+L P P+Q+TPEA+ LFE+K+T T++ IKKDVTRHRYGD+AHLDTTV+ LGLVMP  ++PQLQY++Q +E NGEL F+MVF+S  TP++ WV+PER+ +Y  FFGPGV A V KVDA+ +LVAIKL T   G +P+    A     E AAP
Sbjct:   69 GGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVQSTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVE-NGELAFTMVFKSDDTPYRLWVEPERISRYETFFGPGVWATVEKVDAERRLVAIKLVT---GERPA-SAQASRPEGESAAP 282
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: B7G7J9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7J9_PHATC)

HSP 1 Score: 238 bits (608), Expect = 6.820e-69
Identity = 128/222 (57.66%), Postives = 158/222 (71.17%), Query Frame = 1 
Query:  235 GGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGL--SGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAAPP 894
            G G+N +GE PFEIRGFSL N     G+ +T ASF EY S  G  GL  SG+GFVYGIP+ L G ALKYAE+ P P+ TTP AE +F+ KAT+T+  IK+DVTRHRYGDEAHLDTTVK LGLV+P   YPQLQ + Q    +GEL F+MV+QS  TP+K W  P RV KY KFFGPGV A+V+K+DA+++LV I+LTT   G +P    P E++    +APP
Sbjct:   74 GAGVNNAGEPPFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPVATTPAAERVFDRKATDTILKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLQELRQDEVNDGELAFTMVWQSVDTPYKMWADPRRVLKYEKFFGPGVYADVVKIDAEQRLVGIRLTT---GTRP----PVEEQDTSTSAPP 288
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A7S1ZC13_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZC13_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.770e-68
Identity = 121/198 (61.11%), Postives = 148/198 (74.75%), Query Frame = 1 
Query:  235 GGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTGGAGGL--SGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTT 822
            G G+N +GE PFEIRGFSL N   L G+ VT ASF EY S  G  GL  SG+GFVYGIPI L G ALKYAE+ P P  +TP+ E +FE KAT+ ++ IK+DVTRHRYGDEAHLDTTVK LGLV+P  DYPQLQ + + +  +GEL F+MV+QS  TPFK W   +R +KY  FFGPGV AEV+K+DA+++LV I+LTT
Sbjct:   69 GAGVNNAGEPPFEIRGFSLGNLVILAGVVVTFASFAEYLSESGGDGLNVSGLGFVYGIPIFLAGAALKYAEIEPVPCYSTPDGERIFESKATDIIQKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKDYPQLQELREEMTEDGELAFTMVWQSYDTPFKLWADEKRRKKYETFFGPGVGAEVVKIDAEQRLVGIRLTT 266
[Close]
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Match: A0A7S2UH94_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH94_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.830e-67
Identity = 125/207 (60.39%), Postives = 150/207 (72.46%), Query Frame = 1 
Query:  235 GGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFFEYFSTG-GAGGL--SGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGVQPS 846
            G G+N +GE PFEIRGFSL N    +G+A+T  SF EY   G G GGL  SG+GFVYGIP+ L G ALKYAE+ P PL ++ E++ LFE K TE M  IKKDVTRHRYGDEAHLDTTVK LGLV+P   YPQLQ + Q   P+GEL F+MV+QS  TP+K W    RV+KY  FFGPGV AEV+K+DA+++LV IKLTT P    P+
Sbjct:   82 GAGVNNAGEPPFEIRGFSLGNLVIALGVAITVLSFTEYLGDGSGDGGLGVSGLGFVYGIPVFLAGAALKYAEIEPVPLFSSDESQTLFEAKKTEVMDKIKKDVTRHRYGDEAHLDTTVKRLGLVVPGKAYPQLQELRQETTPDGELAFTMVWQSLDTPYKMWADERRVKKYDTFFGPGVTAEVLKIDAEQRLVGIKLTTGPKPTTPT 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M9_ECTSI7.630e-13691.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHW7_9STRA1.330e-8767.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4E2_9STRA3.460e-8266.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UF83_9STRA1.650e-7561.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U5M2_9STRA4.950e-7558.37Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8J9X6Z0_PHATR2.500e-7058.11Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A4D9DHB4_9STRA1.730e-6958.90Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
B7G7J9_PHATC6.820e-6957.66Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZC13_9STRA2.770e-6861.11Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S2UH94_9STRA1.830e-6760.39Hypothetical protein n=2 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:1602258..1607121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.6
Seed ortholog evalue1.9e-113
Seed eggNOG ortholog2880.D7G4M9
EggNOG free text desc.Protein of unknown function (DUF2854)
EggNOG OGs28IHE@1,2QQU9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionProtein of unknown function DUF2854
Ec32 orthologEc-00_007720.1
Exons6
Model size2347
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3266.1prot_P-fluviatile_contig18.3266.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 1602300..1605683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.134845-UTR-P-fluviatile_contig18:1602257..16022991622815768.134845-UTR-P-fluviatile_contig18:1602257..1602299Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1602258..1602299 +
1693563270.3460102-UTR-P-fluviatile_contig18:1602257..16022991693563270.3460102-UTR-P-fluviatile_contig18:1602257..1602299Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1602258..1602299 +
1622815768.2169518-UTR-P-fluviatile_contig18:1605683..16071211622815768.2169518-UTR-P-fluviatile_contig18:1605683..1607121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1605684..1607121 +
1693563270.4340699-UTR-P-fluviatile_contig18:1605683..16071211693563270.4340699-UTR-P-fluviatile_contig18:1605683..1607121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1605684..1607121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.1470077-CDS-P-fluviatile_contig18:1602299..16024581622815768.1470077-CDS-P-fluviatile_contig18:1602299..1602458Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1602300..1602458 +
1693563270.35872-CDS-P-fluviatile_contig18:1602299..16024581693563270.35872-CDS-P-fluviatile_contig18:1602299..1602458Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1602300..1602458 +
1622815768.1588376-CDS-P-fluviatile_contig18:1603002..16032331622815768.1588376-CDS-P-fluviatile_contig18:1603002..1603233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1603003..1603233 +
1693563270.3738132-CDS-P-fluviatile_contig18:1603002..16032331693563270.3738132-CDS-P-fluviatile_contig18:1603002..1603233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1603003..1603233 +
1622815768.1690803-CDS-P-fluviatile_contig18:1603698..16037731622815768.1690803-CDS-P-fluviatile_contig18:1603698..1603773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1603699..1603773 +
1693563270.3900127-CDS-P-fluviatile_contig18:1603698..16037731693563270.3900127-CDS-P-fluviatile_contig18:1603698..1603773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1603699..1603773 +
1622815768.1822228-CDS-P-fluviatile_contig18:1604096..16042281622815768.1822228-CDS-P-fluviatile_contig18:1604096..1604228Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1604097..1604228 +
1693563270.403335-CDS-P-fluviatile_contig18:1604096..16042281693563270.403335-CDS-P-fluviatile_contig18:1604096..1604228Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1604097..1604228 +
1622815768.1948771-CDS-P-fluviatile_contig18:1604787..16049191622815768.1948771-CDS-P-fluviatile_contig18:1604787..1604919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1604788..1604919 +
1693563270.4181771-CDS-P-fluviatile_contig18:1604787..16049191693563270.4181771-CDS-P-fluviatile_contig18:1604787..1604919Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1604788..1604919 +
1622815768.2055335-CDS-P-fluviatile_contig18:1605545..16056831622815768.2055335-CDS-P-fluviatile_contig18:1605545..1605683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1605546..1605683 +
1693563270.4262238-CDS-P-fluviatile_contig18:1605545..16056831693563270.4262238-CDS-P-fluviatile_contig18:1605545..1605683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1605546..1605683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3266.1

>prot_P-fluviatile_contig18.3266.1 ID=prot_P-fluviatile_contig18.3266.1|Name=mRNA_P-fluviatile_contig18.3266.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=289bp
MPAGQAAAGLAASPQHARVLLSAARGDTYHWKQRCLSSSSCGPHRRRQPL
CLQQMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAGLVGLAVTSASFF
EYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFE
EKATETMRTIKKDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQT
IEPNGELGFSMVFQSKMTPFKRWVQPERVQKYVKFFGPGVDAEVIKVDAQ
EKLVAIKLTTLPPGVQPSPKVPAEDKVAEGAAPPAQEA*
back to top

mRNA from alignment at P-fluviatile_contig18:1602258..1607121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3266.1 ID=mRNA_P-fluviatile_contig18.3266.1|Name=mRNA_P-fluviatile_contig18.3266.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4864bp|location=Sequence derived from alignment at P-fluviatile_contig18:1602258..1607121+ (Porterinema fluviatile SAG_2381)
ATCATCGCTCTCTGCTCCCTGGGAGCCGTGACGGGATTTGTAATGCCCGC
GGGACAAGCGGCGGCAGGACTGGCCGCCTCTCCTCAACACGCACGAGTGT
TGCTGTCGGCGGCGAGAGGGGACACGTACCACTGGAAGCAGCGGTGTCTC
AGCAGCAGCAGCTGTGGCCCACACCGCCGCCGGCAGCCCCTGTGCCTCCA
GGTTCGTCGGGTAGTAGTTTCTCGTGTAGTCTTTCTTTGTCTCTGCTCCC
CTCAAGTAATGTTTGTGTGTTCGCGAGAGAGAGAGACGGTCTGAGGGTGA
TCCGACCTTCGTCGCGTCATGATTTCTGCAACGTACGCCGACGTTGCTCC
ACCCGATCCCGCACCCAGCGGGCAATCCCCCCTCCCCCTAGCCCGGCACC
CAGCACACATGGGTATGCCCCTGCTGTTGCCAGACTGTCCTTGAATGATC
GCACGCAGTGATGGGTTCCGGCTCCTGGCTCACGATTCAGATCCTGTCGA
TCACGCCCCTGTCGGCAAGAAAAAGGCTTAGTCGCCAGCTCTTTCATGAT
AGTCTAATCGATGCCTCCTTGCTTCCCTGCCTCCCTGCCTCCCTGTCCAC
GACATTGTGTCGAGCCGCCGACCAAACGTGTTGTAGCCAGCACACAGCCA
ACAACAAGCATCCGCTCAGATTCTTTCTGCATCTTCCCCATCCTCCCACC
ATACCCCGCCGCGGACCTGGCGCACCTCGAACCCTCGGCAACAAGCAGAT
GCAGTCGGACGGGCCGAGCCAGTGGGCGGGCGGAGGAATCAATGTGTCCG
GTGAGGCTCCGTTTGAGATCCGCGGGTTTTCTCTCGCGAACGCGGCGGGG
CTGGTCGGACTAGCCGTCACGTCGGCGTCGTTCTTCGAGTACTTCTCCAC
CGGCGGCGCCGGGGGTCTGTCAGGGATCGGCTTCGTCTACGGCATCCCCA
TTGCGCTCATCGGACTCGCACTGAAGGTTGGGGGGTGCCTGTTGCGGATG
TGGATGAACCCATGAGAGCGTCTTCCGCTGACTGCGGGCTGCGTTCCGAG
ATAGGCAGCCTGGCTGTTTGCCGCAGAGTGTATTGTTTGCGAGGTTCGCT
TTCTCGAGGATGGAGCGCGAAGTGTGAGTCAAGGTCTACCAGCTTTCTCA
CAGACATCAGGAATGTCTAATCGAACGCTCATAGCTCTCTTGCGTTTCAA
CGCGGGCACCACAGAGATCATATCCACGAACCCCCGTGCCTCGCTTATCC
GCGGAATTAAGAATGAGGAGATGAGCAGCACAAACCGCAGGACGGGCGAG
ATTTTAATCTGCAGGCCAAGCAACATGACGTTGAAACCGGTCACTCGTTG
CACACTTTCCAACACTTGACTCCTCCGATAGCCGCCCTACCCCGGCCCCT
GCCTCTCCCCGCTGACCGCTCTCTCGCGGACGCCTCCACAGTACGCCGAA
CTTCCCCCCGCGCCACTCCAAACGACCCCCGAAGCGGAAGCATTGTTCGA
GGAGAAGGCCACGGAGGTGTGTGACGTGCTCGCGATGCAGATGCATTAGG
GAGGCTTGCGCCGCCCGCGTTTTCTCACCGTGGTCTCCTGTCCGCTCTTT
CTTTCCCCTTCCCTCCCCGCTCTCTCGAGCCTAATTCATCAAAAGCAGGT
TTGAAAAATTGAAAACGTAGAAAATCATCTTGCTTGTTTCCTGCTAGGCT
TGGCTCGAGCCTCCTTCAAGAATTGTAATCATCAATGTATGGATCACCCG
CCGGCTTTGTCGCTGGGCTCTGTGTCCTCAAGTTTTCCTTTTGCTCTCTG
CTCCTCGGGTCTACCTCGGTGAATAAAAAAACACGCCAGACCATGAGAAC
CATCAAAAAAGACGTCACGCGCCACCGGTACGGGGACGAGGCTCACTTGG
ACACCACGGTCAAGTTCCTTGGCCTCGTGATGCCGCAGTCAGACTACCCG
CAGCTCCAGTACATCTCGCAGGTAACGCTTCGGAGAAGCCTCACGTAATG
GTTACACGCAAGAAGAGAGTTTCGCCTGCTGGTATCATTAAGACGCGAGA
GGCTGTACCTGCTGCCGTCGCACTTGTTCATGCATGCTTATTGCATGTTG
TACTACCATCACTGCCCAGCCTCTATTCACAGCAAGAAATGAAAATGTCG
TTCGGTCCATTTCCTGCGTGTTGTTTTGCAGCGGTCCGCCCCCCTTTCCC
CTTCCGCCGCTTCAACCGCTGTGCCCTAAGCTGCTCCTTTTTTCTCCTCA
AGCCTTTGCTGTCCCGCTGAGTTTCTCTCGAAGAATTCACGAGGCCCGCC
CTTTCTGCTGTACTGCAAGAAAGCACGTGCCGAGTTGCGCCGCTGCCGGT
GGACGTCGGGGTATCCCGCGGGTATTATGAGCTTCCAGCTCTCTCAACAA
ACTTTAAAGCACGTGGCACCGGCAGTCAGCCAGACTTCCCCCGAGGCCGC
AACCTGATGTTTATTGTCGTCGTTATTCCTACCTGTCACTGCTCTTGTTC
GTTGGCGCGTGCGGGTTGGTTGGTTGATAGACCATCGAGCCGAACGGTGA
GCTCGGCTTCTCCATGGTGTTCCAGTCTAAAATGACGCCCTTCAAGCGAT
GGGTGCAGCCGGAGCGCGTCCAGAAGTACGTTAAATTCTTTGGCCCCGGC
GTGGACGCGGAGGTGAGAAAAAGGCTCTGCGTCTCTACGCGGGCATGTGG
ATATGCGTGCGTTTGTACGCGAATGCGTGTGCTCGATGTAGCTGGGTGTG
CAAAATACGTGTGCGTAGTTTGGACGTTGTGTGCTCGGTGTAGGTAGGCG
TGCAAGAGGAGAATGCGTTTTACGAACGTGTGTGCTCCGTTTAGGCGTGC
AGAGATGCAAGTGCATTGTTCGCACCTGCATGCTCTGTGGAGGTGTGCCG
AGAGGTGCGTGCGTTGTACGAGTACGTGTGTGCTATGTGTAGGTAAGAGA
CGAATTCGCTGCCATCAGGGCGAAAGGGTCGCTCTTCGGCTGGGAAGAGT
TGGCCGTGCTGGAGGAGTACATTCGGTCCCCTCGAGGGCTAGTCCCGGAC
CTCAGGTACGCGGGGGATTTTTCTCAACAGGTGTGTAATATGCGCGGCCC
GATGCTTTCGTCTTCATACTCTGATTCCTCGGATCGCTTTGGCACGTGCT
ACTTGGCTCCAACATCTTGTGACCGATCCAGGGGGTAGGTCAAAAAGCGA
TGCAGGTTTTGAAATGTGGTCCTGACATGTAGTTTAGCACACTCTGGTTA
CCCCTCTTGCGCAATCTCCATCCCCCTCCTCCACGCAGGTCATCAAGGTC
GATGCTCAAGAGAAGTTGGTGGCCATTAAGCTGACCACGCTCCCCCCAGG
AGTGCAGCCTAGCCCGAAGGTCCCGGCAGAAGATAAGGTAGCGGAGGGGG
CGGCACCACCAGCGCAGGAGGCTTGATTTGCTTAACGCGACAGCCGAGGG
TATTGGGGAGTGGCAATGAAGGAGCACCGGAGCCCAGGCAGGTGGTCCGT
GGTGTTGCCGCTGTGGTGTGTGGCGAGGTTTAGTGTAACTTGATGCAGGG
TGTATTCTGCATTTGTCTGAGCAAGCCGGCATCAGCCAAGTTCTTCGAAA
AGCCTTTTTTTTTGTCCCAAGGGAATGACGTGTCCCTATGGATAGAAATC
AAATCTATTTGCCGGCCGGCTTGCCGGGAAAAAAGACAAGAGGAGCCTGA
GAGCAACCACTCTTTCATGCCCGAGCCGGATGTTCTTTGTGGTTTTCGCA
TGTGTCGAGGAATAAACGGACACCAGAGTAAGGCTCGACGGCTAGGAGAA
AACAGCCGGCGACGCTTTTGAGCGCAGATGATAACCACGGTACGTCGTTG
GGCTCGGCAATTCGTGGGCGGAAGGGTGGGCGAGATTGCCTCAGGTGGTA
GCACCGCAGGTTTTCATTTCTTGCTCCCTGTTCTTGAGCATGGTCTGCTT
ACTCCGTAGGTTCCCGTTGCCGCTGATGCACGGGCTGGCTCGAGTGCCCC
GCGGCGGAGATCATCACTTTGAGACTCGAGGGCCGTCGAGCCCCGAACGG
TAGGCCATGAAGACTTGCGTGGCTTCATCTATGATGGCAAGATTTCGTTT
CCCCTCGGCGTGCTTGTGGGCCGTCAAGTCGGCGGTTTAACTCGAACGGG
GAGCACTAAGGTAGGCATTGTCCCTTTTTATTTCGAGGTGGTCAAGGGTT
TTGTTGGCTGTGATTGCCACGCCACGCTAGCGTGTTGTGGCCAGGAGGCG
GGCGCGTTTAGAAGAGTGGCATGCTCCTTGTATAGAGGGCTGTGGCGCGC
GGAACTGTCGCATCCAACAAGCAAGTGAAATACGTATGGAAGCCCGGAAA
GCCCTGCCCAAAATGACGTACTGGTTGTAGCAGCGGGCTACAGGTCACGA
TTGTTTTTGTTGTCGACATCGATAGTATGGGGTGATGTGCCGTTTCCTGG
AGAGAAATTGTTGAGCTTCTTGCTTGGGCAACGGTCGCTTCTTCGCCTGC
CATCGTTGAAAAAGAAAATATCGTTGTATCGGCAGGCTGGAAATTGGATT
CCCGGCGGGTCCGGGTCCTCTTGATAGCTGGGGATCTGTCGTGTTATTAG
AAGTTGGCGAGCCGTCCGGCGAACGTTGTCACTGGCTTGCTTTACTTACA
CCGCAAGCCGCAAGGGTGAGCACTGCACAGCAGAGTAAAAGGGATAGGTT
TAGAGATCTCGCTTCAGAAGTAAACAATGGAGAAAGAAAAAAAAAGTTCG
AACGATGTCCCCGGTGCTGATTTTCGGTGAAACGGTCTTGGTCGTTCGGG
GCTTGCAAGTGACGGGCTCGCAGCCGAACGATCCCGACAAAACGTGGTTG
TCTTGCTGCTGCCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig18:1602258..1607121+

>mRNA_P-fluviatile_contig18.3266.1 ID=mRNA_P-fluviatile_contig18.3266.1|Name=mRNA_P-fluviatile_contig18.3266.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1734bp|location=Sequence derived from alignment at P-fluviatile_contig18:1602258..1607121+ (Porterinema fluviatile SAG_2381)
ATGCCCGCGGGACAAGCGGCGGCAGGACTGGCCGCCTCTCCTCAACACGC
ACGAGTGTTGCTGTCGGCGGCGAGAGGGGACACGTACCACTGGAAGCAGC
GGTGTCTCAGCAGCAGCAGCTGTGGCCCACACCGCCGCCGGCAGCCCCTG
TGCCTCCAGATGCCCGCGGGACAAGCGGCGGCAGGACTGGCCGCCTCTCC
TCAACACGCACGAGTGTTGCTGTCGGCGGCGAGAGGGGACACGTACCACT
GGAAGCAGCGGTGTCTCAGCAGCAGCAGCTGTGGCCCACACCGCCGCCGG
CAGCCCCTGTGCCTCCAGCAGATGCAGTCGGACGGGCCGAGCCAGTGGGC
GGGCGGAGGAATCAATGTGTCCGGTGAGGCTCCGTTTGAGATCCGCGGGT
TTTCTCTCGCGAACGCGGCGGGGCTGGTCGGACTAGCCGTCACGTCGGCG
TCGTTCTTCGAGTACTTCTCCACCGGCGGCGCCGGGGGTCTGTCAGGGAT
CGGCTTCGTCTACGGCATCCCCATTGCGCTCATCGGACTCGCACTGAAGC
AGATGCAGTCGGACGGGCCGAGCCAGTGGGCGGGCGGAGGAATCAATGTG
TCCGGTGAGGCTCCGTTTGAGATCCGCGGGTTTTCTCTCGCGAACGCGGC
GGGGCTGGTCGGACTAGCCGTCACGTCGGCGTCGTTCTTCGAGTACTTCT
CCACCGGCGGCGCCGGGGGTCTGTCAGGGATCGGCTTCGTCTACGGCATC
CCCATTGCGCTCATCGGACTCGCACTGAAGTACGCCGAACTTCCCCCCGC
GCCACTCCAAACGACCCCCGAAGCGGAAGCATTGTTCGAGGAGAAGGCCA
CGGAGTACGCCGAACTTCCCCCCGCGCCACTCCAAACGACCCCCGAAGCG
GAAGCATTGTTCGAGGAGAAGGCCACGGAGACCATGAGAACCATCAAAAA
AGACGTCACGCGCCACCGGTACGGGGACGAGGCTCACTTGGACACCACGG
TCAAGTTCCTTGGCCTCGTGATGCCGCAGTCAGACTACCCGCAGCTCCAG
TACATCTCGCAGACCATGAGAACCATCAAAAAAGACGTCACGCGCCACCG
GTACGGGGACGAGGCTCACTTGGACACCACGGTCAAGTTCCTTGGCCTCG
TGATGCCGCAGTCAGACTACCCGCAGCTCCAGTACATCTCGCAGACCATC
GAGCCGAACGGTGAGCTCGGCTTCTCCATGGTGTTCCAGTCTAAAATGAC
GCCCTTCAAGCGATGGGTGCAGCCGGAGCGCGTCCAGAAGTACGTTAAAT
TCTTTGGCCCCGGCGTGGACGCGGAGACCATCGAGCCGAACGGTGAGCTC
GGCTTCTCCATGGTGTTCCAGTCTAAAATGACGCCCTTCAAGCGATGGGT
GCAGCCGGAGCGCGTCCAGAAGTACGTTAAATTCTTTGGCCCCGGCGTGG
ACGCGGAGGTCATCAAGGTCGATGCTCAAGAGAAGTTGGTGGCCATTAAG
CTGACCACGCTCCCCCCAGGAGTGCAGCCTAGCCCGAAGGTCCCGGCAGA
AGATAAGGTAGCGGAGGGGGCGGCACCACCAGCGCAGGAGGCTTGAGTCA
TCAAGGTCGATGCTCAAGAGAAGTTGGTGGCCATTAAGCTGACCACGCTC
CCCCCAGGAGTGCAGCCTAGCCCGAAGGTCCCGGCAGAAGATAAGGTAGC
GGAGGGGGCGGCACCACCAGCGCAGGAGGCTTGA
back to top