mRNA_P-fluviatile_contig18.3236.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3236.1
Unique NamemRNA_P-fluviatile_contig18.3236.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: D8LF39_ECTSI (Putative Translation Initiation Inhibitor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF39_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 8.870e-63
Identity = 112/135 (82.96%), Postives = 120/135 (88.89%), Query Frame = 1
Query:  823 APAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKIRLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEVGS 1227
            A  GNYV++RRSGD+LY+SGHLPKA DGTLTTGKVG DL+ ++  EAARLVA+NLITTMKAAAGDLDKIRLVKITGFV SADGFTGQS VLNGASDL LEVFG E GAHARSAVGVN LPLGVCVEIEAI EV S
Sbjct:   66 AARGNYVLHRRSGDTLYMSGHLPKAPDGTLTTGKVGSDLEIEQGAEAARLVAINLITTMKAAAGDLDKIRLVKITGFVRSADGFTGQSAVLNGASDLLLEVFGREKGAHARSAVGVNALPLGVCVEIEAIAEVVS 200          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A4D9CNR0_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNR0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.030e-42
Identity = 83/150 (55.33%), Postives = 114/150 (76.00%), Query Frame = 1
Query:  778 VESKLAELGITLPEV-APAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            +E++LA+LGI LP+V AP GNY +  R+G+ L+L+GH+P  + G L TGKVG D   ++  EAA+++A+NL+ T+K+  GDLDK+ R+VK+ GFV+  DGF+ Q  V+NGASD F++VFG + G HARSAVG N LPL + VEIEAIVEV
Sbjct:    4 IEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKSGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFG-DKGVHARSAVGTNALPLNIPVEIEAIVEV 152          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A7S3M7I1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I1_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.940e-42
Identity = 82/151 (54.30%), Postives = 113/151 (74.83%), Query Frame = 1
Query:  778 VESKLAELGITLPEVAPA--GNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKIR-LVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            +E+++A LG  LP   PA  GNY+ Y + G+++Y +GHLP+  DGTL  G++G ++  ++  +AAR+ A+N++ T+K+A GDLDK++ +VKITGFV+SA  FT Q  VLNG SDL  E+FG E G HARSA+GVN LPLGV VEIEAI+EV
Sbjct:   35 IEARIASLGYKLPNEPPAPKGNYMGYTKRGNTIYTAGHLPQKHDGTLVLGRLGENVTVEQGQDAARVAALNILATVKSAVGDLDKVKKIVKITGFVNSASDFTNQPAVLNGCSDLLGEIFGVEIGRHARSALGVNVLPLGVAVEIEAIIEV 185          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.460e-42
Identity = 89/148 (60.14%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  781 ESKLAELGITLPEV-APAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVE 1218
            E+KL ELGI LP   AP GN+VM  R+G+ LY SGHLP + +G  TTGKVG +L+ ++A EAAR VA+ LI ++K   GDLD++ R+VK+ GFV+  DGF GQ  V+NGASDLF EVFG E G H+RSAVG N LP+ V VEIEAIVE
Sbjct:   22 EAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFG-ERGVHSRSAVGTNALPMNVPVEIEAIVE 168          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A3R7HFK6_9STRA (YjgF_endoribonc domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HFK6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.450e-41
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = 1
Query:  745 RSAAVAMASGAVESKLAELGITLPEVA-PAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            RS A A+ +  +E KL ELG  LPEVA P GNY    RSG+++Y++GHLP+   G L TGKVG DL  ++A +AA  V+++++ T+K   GDLDKI R+VK+ GFV+  DGF GQ  V+NGASD F +VFG   G HARSAVG N LPL V VEIEA+VE+
Sbjct:   11 RSLATAVRNVHIERKLEELGYVLPEVASPKGNYRTSVRSGNTIYMAGHLPQPAGGELITGKVGKDLTPEEAYDAAHYVSLSIMATLKQEVGDLDKIKRVVKLVGFVNCVDGFAGQPAVINGASDTFGKVFG-NKGVHARSAVGTNALPLNVAVEIEAVVEI 170          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.640e-40
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query:  778 VESKLAELGITLPE-VAPAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVE 1218
            +E++LA+ GI L + V P GNYV   RSG++L+L+GH+P   D  L  GKVG D+  ++A   AR VA+N+++T+K   GDLD++ R+VK+ GFV+  D FTGQ  V+NGASDLF+EVFG + G HARSAVG N LPLG+ VEIEA++E
Sbjct:   23 IEARLAQRGIQLSDPVPPKGNYVPAVRSGNTLFLAGHIPLMPDNNLAKGKVGKDVTPEQANAIARQVAINILSTLKVELGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFG-KKGVHARSAVGTNALPLGIPVEIEAVIE 170          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A285NKR6_9HYPH (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A285NKR6_9HYPH)

HSP 1 Score: 154 bits (389), Expect = 2.720e-40
Identity = 87/150 (58.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query:  778 VESKLAELGITLPEVA-PAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            +E+KLAELGITLPE A PA NYV + ++G+ LY+SG LP   +G    GK+G D  AD+  EAARL A+NLI  MKAA GDL+KI R+VK+ GFV+S   F  Q  V+NGAS+L ++VFG E G HARSAV    LP GV VEI+AIVE+
Sbjct:    5 IEAKLAELGITLPEAAAPAANYVPFLKTGNQLYISGQLPMTAEGIQFKGKLGEDFTADEGSEAARLCAINLIAQMKAATGDLEKIARIVKLGGFVNSTADFGDQPAVINGASNLMVDVFG-EKGRHARSAVSAAALPFGVAVEIDAIVEL 153          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A2R5GI79_9STRA (Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI79_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.650e-40
Identity = 81/149 (54.36%), Postives = 112/149 (75.17%), Query Frame = 1
Query:  781 ESKLAELGITLPEVA-PAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            E+KL +LG TLP+VA P G+Y +  RSG+ ++ +GHLP+  +G L  GKVG+DL  ++A +AA+  A++++ T+KA  GDLD++ R+VK+ GFV+ ADGF  Q  V+NGASDLF EV G E G HARSAVG N+LPL + VE+EAIVE+
Sbjct:   34 EAKLEKLGYTLPQVASPKGSYQLCVRSGNQMFTAGHLPQPANGDLLVGKVGVDLSVEEANKAAQYCALSILATLKAELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLG-ERGLHARSAVGTNSLPLNIPVEVEAIVEI 181          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: H3HDE8_PHYRM (YjgF_endoribonc domain-containing protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=H3HDE8_PHYRM)

HSP 1 Score: 153 bits (386), Expect = 1.170e-39
Identity = 90/161 (55.90%), Postives = 112/161 (69.57%), Query Frame = 1
Query:  745 RSAAVAMASGAVESKLAELGITLPEVA-PAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEV 1221
            RS A A+ +  +E KL ELG TLP VA P GNY    RSG++LYL+GHLP+   G L  GKVG DL  ++  +AA  VA++L+ T+K   GDLDKI R+VK+ GFV+  DGFT Q  V+NGASD   +VFG + G HARSAVG N LPL V VEIEA+VE+
Sbjct:   10 RSLATAVRNVHIERKLEELGYTLPAVADPKGNYRTSVRSGNTLYLAGHLPQPAGGDLILGKVGKDLTPEQGYDAAHYVALSLMATLKHEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFG-DKGLHARSAVGTNALPLNVAVEIEAVVEI 169          
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Match: A0A6L7M7N1_9CHLR (RidA family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7M7N1_9CHLR)

HSP 1 Score: 152 bits (384), Expect = 1.210e-39
Identity = 86/148 (58.11%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  781 ESKLAELGITLPEVA-PAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGEAARLVAVNLITTMKAAAGDLDKI-RLVKITGFVHSADGFTGQSNVLNGASDLFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVE 1218
            E++L ELGI LPE A PAG+YV   +SG+ LYL+GHLP A +G+ + GKVG DLDAD+A   AR V +NL+ T++AA G+LD++ R+VK+ GFV+SA GF+ Q  V+NG SDL  +VFG E G HARSAVG N LPL   VEIE IV+
Sbjct:    4 EARLIELGIELPEPAVPAGSYVTSVQSGNMLYLAGHLPAASEGSWS-GKVGSDLDADEAAVVARAVGINLLATIRAALGNLDRVVRIVKVLGFVNSAPGFSDQPKVINGCSDLMAQVFG-ERGRHARSAVGANELPLNTPVEIEMIVQ 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF39_ECTSI8.870e-6382.96Putative Translation Initiation Inhibitor n=1 Tax=... [more]
A0A4D9CNR0_9STRA2.030e-4255.33YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A7S3M7I1_9STRA2.940e-4254.30Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5KXY4_9PHAE5.460e-4260.14YjgF_endoribonc domain-containing protein n=2 Tax=... [more]
A0A3R7HFK6_9STRA3.450e-4155.28YjgF_endoribonc domain-containing protein n=3 Tax=... [more]
A0A835Z1E3_9STRA2.640e-4054.36Putative translation initiation inhibitor n=1 Tax=... [more]
A0A285NKR6_9HYPH2.720e-4058.00Enamine deaminase RidA, house cleaning of reactive... [more]
A0A2R5GI79_9STRA4.650e-4054.36Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID... [more]
H3HDE8_PHYRM1.170e-3955.90YjgF_endoribonc domain-containing protein n=9 Tax=... [more]
A0A6L7M7N1_9CHLR1.210e-3958.11RidA family protein n=1 Tax=Chloroflexi bacterium ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:1350291..1354454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue1.6e-54
Seed eggNOG ortholog2880.D8LF39
EggNOG free text desc.YjgF/chorismate_mutase-like, putative endoribonuclease
EggNOG OGs2QS7E@2759,COG0251@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative Translation Initiation Inhibitor
Ec32 orthologEc-06_001550.1
Exons5
Model size1978
Cds size720
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.0677683-UTR-P-fluviatile_contig18:1350290..13508001622815764.0677683-UTR-P-fluviatile_contig18:1350290..1350800Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1350291..1350800 +
1693563256.1774218-UTR-P-fluviatile_contig18:1350290..13508001693563256.1774218-UTR-P-fluviatile_contig18:1350290..1350800Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1350291..1350800 +
1622815764.1466362-UTR-P-fluviatile_contig18:1353706..13544541622815764.1466362-UTR-P-fluviatile_contig18:1353706..1354454Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1353707..1354454 +
1693563256.2501657-UTR-P-fluviatile_contig18:1353706..13544541693563256.2501657-UTR-P-fluviatile_contig18:1353706..1354454Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1353707..1354454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.0813153-CDS-P-fluviatile_contig18:1350800..13511221622815764.0813153-CDS-P-fluviatile_contig18:1350800..1351122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1350801..1351122 +
1693563256.199149-CDS-P-fluviatile_contig18:1350800..13511221693563256.199149-CDS-P-fluviatile_contig18:1350800..1351122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1350801..1351122 +
1622815764.0917156-CDS-P-fluviatile_contig18:1351464..13515561622815764.0917156-CDS-P-fluviatile_contig18:1351464..1351556Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1351465..1351556 +
1693563256.2103653-CDS-P-fluviatile_contig18:1351464..13515561693563256.2103653-CDS-P-fluviatile_contig18:1351464..1351556Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1351465..1351556 +
1622815764.1020517-CDS-P-fluviatile_contig18:1352639..13527181622815764.1020517-CDS-P-fluviatile_contig18:1352639..1352718Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1352640..1352718 +
1693563256.2202904-CDS-P-fluviatile_contig18:1352639..13527181693563256.2202904-CDS-P-fluviatile_contig18:1352639..1352718Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1352640..1352718 +
1622815764.1119432-CDS-P-fluviatile_contig18:1353254..13533121622815764.1119432-CDS-P-fluviatile_contig18:1353254..1353312Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1353255..1353312 +
1693563256.2302592-CDS-P-fluviatile_contig18:1353254..13533121693563256.2302592-CDS-P-fluviatile_contig18:1353254..1353312Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1353255..1353312 +
1622815764.1290958-CDS-P-fluviatile_contig18:1353537..13537061622815764.1290958-CDS-P-fluviatile_contig18:1353537..1353706Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1353538..1353706 +
1693563256.240079-CDS-P-fluviatile_contig18:1353537..13537061693563256.240079-CDS-P-fluviatile_contig18:1353537..1353706Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1353538..1353706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3236.1prot_P-fluviatile_contig18.3236.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 1350801..1353706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3236.1

>prot_P-fluviatile_contig18.3236.1 ID=prot_P-fluviatile_contig18.3236.1|Name=mRNA_P-fluviatile_contig18.3236.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=240bp
MKIVEERQQYRSKDSACVTASQSSASLRSPPPLRPPYRVSPFRLLLATAD
GVSIISTVIAGKTYTRRNVGAAFPSPRARSAAVAMASGAVESKLAELGIT
LPEVAPAGNYVMYRRSGDSLYLSGHLPKAQDGTLTTGKVGLDLDADKAGE
AARLVAVNLITTMKAAAGDLDKIRLVKITGFVHSADGFTGQSNVLNGASD
LFLEVFGPENGAHARSAVGVNTLPLGVCVEIEAIVEVGS*
back to top

mRNA from alignment at P-fluviatile_contig18:1350291..1354454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3236.1 ID=mRNA_P-fluviatile_contig18.3236.1|Name=mRNA_P-fluviatile_contig18.3236.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4164bp|location=Sequence derived from alignment at P-fluviatile_contig18:1350291..1354454+ (Porterinema fluviatile SAG_2381)
GTGGGATGTGAGTACAAAGGCGGCGCGGACGTTTCACGGCACTGGGCGAG ATGATCGGGGAAGTTTCGACAGAACCACAGAAGTTACGTGTGACGTGTGT CGGGAGACAATATTTAACTGCTTTACCACGACATGCTTGTTGTGCGCGAC GGTAGCATTCCCGTCCATGGATCCTCTAATAGTCGAAAGTTTGTGGATTT GTGACAGGTTTTTGTTCGTTGAATCATCTGAGATGAAAAATTAAGATATT CGGAAGTTGTCGGATGATGCTATGTTGGTTTGCCGAAATGCTGATGAGGA ACCAATGGTACTTATTCTCATTAAGGTAAAGCTCGAAGATTTTTTACTTG ACAGGATCGCGGCAAATTTTAGGGGCACTGCCGGGTCGACGCCATCGTTC GCCGCAAAGCTGGAAGAAAGGTCTCGATGCATTTGAGATGGCATCATGGT GAAAAATCCCCAGAGGATGACCCCTCCTCCTGAGCGTAGAGCAGTACGAA CACGCCAACAATGAAAATCGTCGAGGAGCGACAACAGTATCGTAGCAAGG ATTCAGCTTGTGTAACGGCTTCTCAATCGAGCGCGTCGCTTCGATCGCCG CCACCGTTGCGTCCGCCATATCGCGTCTCTCCTTTTCGTTTGCTGCTGGC TACTGCTGATGGTGTTTCCATTATCTCCACAGTCATTGCGGGAAAAACAT ACACTCGGAGAAACGTCGGCGCGGCGTTTCCAAGCCCACGCGCTCGCTCA GCGGCGGTTGCGATGGCAAGCGGCGCCGTGGAGAGCAAGCTGGCGGAGCT GGGGATCACCTTGCCGGAGGTGGCACCCGCAGGTAGTGATCAAGGGGCAT GCGCTGCAGCGGCATCCATTCCGTCGGAAAACGAAGGAGGGTGTAAGGCC GTTATTACTTTGGCGTTGGCTGTGCGCATTATGTGGGCGGCGGCATGAGT GGATGGTTACGGAGTGAGGCAACATGACGAAGAGGTAGATACGCCTTACG CGAGAACGATTTTACGGCGTTTGAGTTGAAGGGGTCGACTACTCACAGCC TCGTGCAATGTGGGAGTTAGTTGGTGCAGAATGTCATGTTTCGTGTTTCC CTTCCGGATCTCCCTCTGGCTCCGTGAAAATATTCAACAACGAACCGGAC GGTACTACGTCATGCGGCGTGCAGGGAACTACGTGATGTACAGGAGGTCA GGGGACAGCTTGTACCTGTCCGGGCACCTCCCCAAGGCGCAGGACGGAAC GCTTACCACGGGGAAGGTCAGGAAGGAGGGTGGCCTGCCATCTGTGCTTG GATACGTTTCAGACAGCGGGAGTGGGTCGTCCTCAAGCAGATATCTCATG TGCTACGACATTATGACGCACCCTTCCGGTTTTTGCAATATAACACTGGT TGATGCTGCTGTCGCCTCTCTTCCTGCGCGAGGACTTGCCACGCACAAGC TTCAGTGGTGCGTTCAACAACGAAGCACCCTGATCACATGCCCGTTGCTC AGACCGTGGATTGGCTCCTTCATGCCCTGTATCAGGCGGCTCGCGATATC CTGCACACGCGCTCATCACCGCAGCATAAAGCCCGTTGGGTATGCAGTCG TGCTAGGACGATAGGACGAGATCCCCTCTTGATCTCGGGGGCTGATTCCC ACAGCATTCGCCCAGCTCACGTTTTCTGGCTTGCGTGGTTGTGGCGAGGA CTGGCACGGAACATCGACGACAAAGCGATGTTGAGACAGTCGTGGGTGTT GTCTCGTATCCAGCCATCGTCGACTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTTGCTATCTT CATCTCGTTCTTACTGTTTTCGAGTGCGCCAGCGTCTCGTGATCGGCAGA TCAGGACACCGCAAAAATCCGCTGCCCGATCATTAGACGTGGATATTAAA CGAATTTTCACACCACTGAACCGCCACTGACCGCGCTGACCGGCTCTCCG ACCGCAGAACGTCGGTGTCGGAGGGGGAAAAACACGGTCCCCAAAGGTAG GGCCAGCATATTCTATTAAACTGAGATAGACCTGCTTTCGTAAGATGCCA TATTATTTTTCTCAAACACGCCACCGAAAGGCCATGTGTTTGGGCCCGTG CGTGAGACTCGCCACGCTCGATGCGGTGCTCTGTCTGCCTGCCTCTGCTT GGATCGGGATGCTTATTCTCAAACATGCGACCGAAAGGCCATGTGTGTGG GCCCGTGCGTGAGACTCGCCACGCTCGATGCGGTGCGCTGTCTGCTCGCC TCCGCTTGGGTCGGGATGCTTATTCTTTTTTCTTTCTTTTTTTCCGCAGG TGGGCTTGGATCTGGACGCGGACAAAGCAGGCGAGGCAGCGAGGCTCGTG GCAGTCAACCTCATCACCACCATGAAAGGTGGGATCTCTCTCGTTCTCAA TCTCTCTGCGCACGACGTTCGTTCGCGGTCACTGCCGCCGATGCGAAACA GGAGCACCCTCCACTTTTACCTGTTTCTTTGGGGCACTGCTTCTGGAAGA ACGCGTGTCAAGTTAGACTGTGCGCGATGGTTGTATCCCAAACATGTTTC CCTGAAGACGGCACAATCACCCTTGGGAATGAGAAAATGCAAAGTGCGAA AGCACGCTTGTGACTATCACTTGCTTTGCGTTCATCATTGAGCTCTCCCA CACTGCACAGCCAGGTTCTGCAACGCGTGCTACCGTCCTTGGGTAGCACT TCGATAGCAATAGCACGTTTGGCATTTTGAATGTCAGCGCCGATGCTACC CAGTCATCCCAGCGGACATGTTGTAGCCCCCCTACCACCATCAAACTCCG AGTTACATGCCCCGCCCCCTGGCAGTCCTTCCAATGTACCATTATAATTG ATGTTACTCCCGCTGCCGCTTCACCATGCCTTCAACTCCGAAAAACAAAC CCAAAAAAATCCAGCGGCGGCAGGAGACTTGGACAAGATCCGCCTTGTCA AGATCACCGGCTTCGTGCATAGGTGATGATGCGTCGGCGGAACTTGTTGG CAAGGTTAGGAACCCGGTCGAGTTTTTGTTTTTGTCTTCGAACCTCGTCG ATTTTTTTGTTCGCATTTCCGAACCCCGTGGATGGGAGATGAAAAAACAT GAGTATGAGAAGCCAAACCATAAACATGCCAAGGGTTTGTGATCGTATTT TTTCGTTGAAATTCGAGCGAACGGGTGTTAATCTCTTCTGTCCGCAGCGC CGACGGTTTTACGGGCCAGTCCAACGTCCTCAACGGTGCCTCCGATCTTT TTCTGGAGGTGTTCGGCCCAGAGAACGGTGCGCACGCCAGGAGCGCGGTC GGGGTTAACACTCTCCCGCTGGGCGTCTGCGTAGAGATCGAGGCCATCGT GGAAGTCGGCTCTTGACATATTTGTATACGCCTGTTCGGCAGGACGCCGG TCAAGCGGAGCAGCGGTTGGTTAGTTCGTCAACGAACTTGGTTACAGAGG TGATTGGGTGCGAATTTTTAATTTTTCTCGGACTTTTTTTCAAGTGTCTC CTTGTCTTTCTTGTTTTCATCTCCGGCTTGTTTGATGAATACTCCAGCAC GGTACTGGTGCACGCTTTCTTGTCGACAGGCAGCAGTGTCGGTCGAAAGG TTGTCCGCGACATTGCACTGGGGGCACCGTAGAGGTGGCGGTACGGATCT GGTGGTGTATGATGCCACCCTTTTTTCGGAGAACGCGAAGAATCGTACAT GAGAGTCCCCATTCAGGTGCATCTCATGACTAGAACGAGGAAGTCGAGCA CCCCGTCGGCCTCACGAGCGCCATCGCGGCATCCTGGCGCTTCGATTAAC CGTGCAGCGCTCGAAGTAAGAAAACGAGGAAGAGGGGGTGAGGTGTTCCC AGATTGACGCCCATTGACTCGACCGAGTGTCTTTTGGCTTACACTTTCCC TTGTGGACACTACTTGGGTATTGATAAAGAAGACGCCGAGGCCTTTGTAT TCCTGTGTAAACCTCGGTATTACTGTCACACCTCGCCCTTGCACCTGCAC GGGGAAGGATGCATAACGGTGTGGTACAGGGCCATAATTTTTTTCCACGG AGTCTTGTGAATTTCGCCCACTATGGCCCGACAGTTCACATCCCAGGGTA GATATACATTTTTG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig18:1350291..1354454+

>mRNA_P-fluviatile_contig18.3236.1 ID=mRNA_P-fluviatile_contig18.3236.1|Name=mRNA_P-fluviatile_contig18.3236.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1440bp|location=Sequence derived from alignment at P-fluviatile_contig18:1350291..1354454+ (Porterinema fluviatile SAG_2381)
ATGAAAATCGTCGAGGAGCGACAACAGTATCGTAGCAAGGATTCAGCTTG
TGTAACGGCTTCTCAATCGAGCGCGTCGCTTCGATCGCCGCCACCGTTGC
GTCCGCCATATCGCGTCTCTCCTTTTCGTTTGCTGCTGGCTACTGCTGAT
GGTGTTTCCATTATCTCCACAGTCATTGCGGGAAAAACATACACTCGGAG
AAACGTCGGCGCGGCGTTTCCAAGCCCACGCGCTCGCTCAGCGGCGGTTG
CGATGGCAAGCGGCGCCGTGGAGAGCAAGCTGGCGGAGCTGGGGATCACC
TTGCCGGAGGTGGCACCCGCAGATGAAAATCGTCGAGGAGCGACAACAGT
ATCGTAGCAAGGATTCAGCTTGTGTAACGGCTTCTCAATCGAGCGCGTCG
CTTCGATCGCCGCCACCGTTGCGTCCGCCATATCGCGTCTCTCCTTTTCG
TTTGCTGCTGGCTACTGCTGATGGTGTTTCCATTATCTCCACAGTCATTG
CGGGAAAAACATACACTCGGAGAAACGTCGGCGCGGCGTTTCCAAGCCCA
CGCGCTCGCTCAGCGGCGGTTGCGATGGCAAGCGGCGCCGTGGAGAGCAA
GCTGGCGGAGCTGGGGATCACCTTGCCGGAGGTGGCACCCGCAGGGAACT
ACGTGATGTACAGGAGGTCAGGGGACAGCTTGTACCTGTCCGGGCACCTC
CCCAAGGCGCAGGACGGAACGCTTACCACGGGGAAGGGAACTACGTGATG
TACAGGAGGTCAGGGGACAGCTTGTACCTGTCCGGGCACCTCCCCAAGGC
GCAGGACGGAACGCTTACCACGGGGAAGGTGGGCTTGGATCTGGACGCGG
ACAAAGCAGGCGAGGCAGCGAGGCTCGTGGCAGTCAACCTCATCACCACC
ATGAAAGGTGGGCTTGGATCTGGACGCGGACAAAGCAGGCGAGGCAGCGA
GGCTCGTGGCAGTCAACCTCATCACCACCATGAAAGCGGCGGCAGGAGAC
TTGGACAAGATCCGCCTTGTCAAGATCACCGGCTTCGTGCATAGCGGCGG
CAGGAGACTTGGACAAGATCCGCCTTGTCAAGATCACCGGCTTCGTGCAT
AGCGCCGACGGTTTTACGGGCCAGTCCAACGTCCTCAACGGTGCCTCCGA
TCTTTTTCTGGAGGTGTTCGGCCCAGAGAACGGTGCGCACGCCAGGAGCG
CGGTCGGGGTTAACACTCTCCCGCTGGGCGTCTGCGTAGAGATCGAGGCC
ATCGTGGAAGTCGGCTCTTGACGCCGACGGTTTTACGGGCCAGTCCAACG
TCCTCAACGGTGCCTCCGATCTTTTTCTGGAGGTGTTCGGCCCAGAGAAC
GGTGCGCACGCCAGGAGCGCGGTCGGGGTTAACACTCTCCCGCTGGGCGT
CTGCGTAGAGATCGAGGCCATCGTGGAAGTCGGCTCTTGA
back to top