mRNA_P-fluviatile_contig18.3231.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3231.1
Unique NamemRNA_P-fluviatile_contig18.3231.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig18.3231.1 vs. uniprot
Match: A0A6H5KHH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.280e-20
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:  238 VAGHLSTEATETHVFTSDFQNYIESRDKTYFRTRDHFSDYAEAKARDPSRSSK 396
            +AG  +TEA E+HVFT DFQ+Y+ESRD+TYFRTRDHFSDYAEAKARDPSRS K
Sbjct:    1 MAGRRATEARESHVFTRDFQDYVESRDRTYFRTRDHFSDYAEAKARDPSRSKK 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHH6_9PHAE1.280e-2079.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:1315421..1318170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_001620.1
Exons4
Model size725
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3231.1prot_P-fluviatile_contig18.3231.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 1316406..1317847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.4281914-UTR-P-fluviatile_contig18:1315420..13155861622815763.4281914-UTR-P-fluviatile_contig18:1315420..1315586Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1315421..1315586 +
1693563255.7313216-UTR-P-fluviatile_contig18:1315420..13155861693563255.7313216-UTR-P-fluviatile_contig18:1315420..1315586Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1315421..1315586 +
1622815763.4389112-UTR-P-fluviatile_contig18:1316364..13164051622815763.4389112-UTR-P-fluviatile_contig18:1316364..1316405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1316365..1316405 +
1693563255.7399065-UTR-P-fluviatile_contig18:1316364..13164051693563255.7399065-UTR-P-fluviatile_contig18:1316364..1316405Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1316365..1316405 +
1622815763.4884856-UTR-P-fluviatile_contig18:1317847..13181701622815763.4884856-UTR-P-fluviatile_contig18:1317847..1318170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1317848..1318170 +
1693563255.789144-UTR-P-fluviatile_contig18:1317847..13181701693563255.789144-UTR-P-fluviatile_contig18:1317847..1318170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1317848..1318170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815763.4492047-CDS-P-fluviatile_contig18:1316405..13164081622815763.4492047-CDS-P-fluviatile_contig18:1316405..1316408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1316406..1316408 +
1693563255.7515814-CDS-P-fluviatile_contig18:1316405..13164081693563255.7515814-CDS-P-fluviatile_contig18:1316405..1316408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1316406..1316408 +
1622815763.4617205-CDS-P-fluviatile_contig18:1316914..13169811622815763.4617205-CDS-P-fluviatile_contig18:1316914..1316981Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1316915..1316981 +
1693563255.7609324-CDS-P-fluviatile_contig18:1316914..13169811693563255.7609324-CDS-P-fluviatile_contig18:1316914..1316981Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1316915..1316981 +
1622815763.473048-CDS-P-fluviatile_contig18:1317722..13178471622815763.473048-CDS-P-fluviatile_contig18:1317722..1317847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1317723..1317847 +
1693563255.7760658-CDS-P-fluviatile_contig18:1317722..13178471693563255.7760658-CDS-P-fluviatile_contig18:1317722..1317847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1317723..1317847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3231.1

>prot_P-fluviatile_contig18.3231.1 ID=prot_P-fluviatile_contig18.3231.1|Name=mRNA_P-fluviatile_contig18.3231.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=65bp
MAKMMGFQGRVAGHLSTEATETHVFTSDFQNYIESRDKTYFRTRDHFSDY
AEAKARDPSRSSKK*
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mRNA from alignment at P-fluviatile_contig18:1315421..1318170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3231.1 ID=mRNA_P-fluviatile_contig18.3231.1|Name=mRNA_P-fluviatile_contig18.3231.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2750bp|location=Sequence derived from alignment at P-fluviatile_contig18:1315421..1318170+ (Porterinema fluviatile SAG_2381)
CAAGATAACCAGCAGCAGCACGAGACTTTAGCGCAGAGAGAGGCAAACGA
CCTCCGAGAGCTGCACCTAAGCGCAACATTTTTAACGCCCTTCGCAGTAG
CTGCGACCCATGATAATCAAGTGTGGCTCAGCAGCAGCCATAAGGACTAC
CAAGACCATTCGAAGGGTGAGACGATGGTGATATGAGCCCGGGTACGTGT
GTGTTCGGCAGCCCGCGCGGTGAATCCTTTTGCCTGATCGAAGGGCGGGC
TAGACGAATACTTTGATATACAGTGCCTGCCCGCTCATCATAAGAAACAT
CTTCGTAAGAAACCGAGGCTCAGATTTTTAGCTTACCTTAGAAATATGCC
GTAAGAAATTGTGTTCATCGGCCGGAGCTACACTAAACCCTAGATAGAAG
CCTGCGATCAGTGGTGGGGGACATAGTAAGAAGTGAGCCTCGCTCGAATG
AAGTGTTTCTTACGACCGGGCCGGCACTATTGTAGCTGTACACGATGAGC
AGTTCACATCTTTAGGCAGGTGAGCGTATAACGTTTATATAAAGACTATG
TGCATAGATCTAGATATCTCGACTCTCTCCTTCGTTGTTCTCGGCATGGG
TGCTGTCTGTTCCGCTTGTACCATACTTAGTCAGGCGTTCTCGTAGGGTA
GGCTCAGGATCGGTCGGGCTTGGTCCGCTGAAGCTCCTTCTGCATTGTTC
GACTGTGGTGTATCATGTGTATTTGTCTGTCCCGCTGTCGGCATTGACAC
CTCTCATATCATGACTTTTGCACGGATCCTGTCCGTCATATGGTCTTGTC
CATCCACTATACCACCCAGTCAGCGCTGACTGAGTGGTCCAGTCGATAGA
CCATCCAGCATCTGACGGACAGGTCCGACTTTTGACTAAGTGAGACCCAC
ACGGCTGCTGCTCATTTTTTGCTTCTACATGTGGTTCACTTCAGCTCCAA
ATACGACGCCGGCTGTGGTTAAGCAGAGGACTGATATGGTGAGAATTTTG
CATTGTGACGGCAAACGTTGATCACCTTCACGTGTGACGTCGATCATCTC
CACGTGCGGGATCTCTATGTTTAGGCTTTACAGGCAGAGCCCATACATAT
TATCCCTGATATTTCAGAGAGCGAACTCAGCAAGAAAAAATATGCACCAT
CGGTTGGCTTTCTTGCGACTGGAACAGCTCCCGCCATTTTGGCTTACTTG
CATGAAGTTACCGCGGTCATGAACAGCACAAGAAGAAAGCGGTCACAAAT
TGCTCGCTTGGATGCACCAGAAAAAGCATGATGTCATTCCTTCCGTGATG
TTGTTGACTGCCAGTATTTCTTCCGAAAAACTGGGCAGGTGGAACATTCA
TTTGCTTTTGTATCTTGTGGTCACAAAAATTGCTTTTCGAAGGCCGATCG
CATAGTATTTATTTGGTTACAAAGTTCGAAAAAGCGGAAAGTCAGTGTTC
GACGAACATTTCGTAAGTAGTCTAAGTGCTCAATATTTCGGCAGGCAAAA
ATGATGGGCTTTCAGGGCCGCGTGGCCGGACATCTCAGCACAGAGGCCAC
GGAAACACACGGTGAGATTTACCGCTCTTACCAGCACCACAACAGGGGAT
TTTTTCTTAAGAAAACACTCCGCCGCTCTCCTTTTTGAATAGTAAGAAGA
GTGAATTGCGTTATACTCGACCGTATGTGAGGATAGTGTGCTACTCTCTG
GCGAGAAGTACGAAAGTTCGTACGGAATATTTATCTTTTTGAGAGGTATT
ATCGTCCTGAGTGAGCGGTAGCTCGAAATATTCCACACTTTCTCTGTACC
TTCGTTGCCGTTGGTCCAGGATGGATGCAGTGGGGGCGGAGGAGGAGAGT
TGATCTCCCAAGCAGGTGCTTCGTGTAAGCCAATCAATTTCGAGCGATGT
CAATAGTTTATCCATTCACTCCTGTGTCTGTTCACTAGATTGGCTGGGGA
AAATTGTAATGGGGAGGGAGGTCACCTACCATAAATGGAGGCAATAACCG
GTGATCGAGATATTGTCCATCTGACACTGCACTTCGAAATTGACTCAAGG
TTGAGAGCTGCCACTCCTTGTTGCAATATTTTTTCCTGGCATCCCTGAAC
TTAGCGGAGGAAGGCTAATACGAAAAATACGGGGGGGGCACCGTCGTCAT
CTTTCTCTTGGTGAGGCAAACATGGCCGCATCTACGTCAGGAGTCACACA
CTGTGCCCCCTCCTCAACACGACAGAGCCAACCCTTTACCCCTACCTGTC
AGACAGAGCCGACCCTTTACCCCCGCCTGTCGTCAAATTTTACCCTGTAC
AGTTTTCACCAGCGATTTCCAGAACTACATCGAGAGCAGGGACAAGACAT
ACTTCAGGACTCGGGATCATTTCTCAGACTACGCGGAAGCCAAGGCCCGC
GACCCATCTCGATCTAGTAAAAAATAGTTTAAACCCCCTGCCGGTTTCTA
TTGCTGCTTTCTGTGGCAACAATACTCGTGATGGGAGGACGTTTTGAAGG
GATGAAAAAAAAGGAGGAGTTTACCGAGCTTGTCCTGTGGCTCTGAGCTA
TCCACACACAGATGGTTACGTGCCTTGATATCAGACGCGGGTGATGGAAA
AGCTGGGTCTCCCGCGATCGTGTTCGGCATTTCTCCCCTCCACACTGGTA
TCACTAGCGCGCCATGAAAGTACTTCGCCTCTGGAGCCTGACCTAAGCAC
CACCAGCTGTACTCTCATACTGTGCATTTCGGTTGCCACGCCCAAGACCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:1315421..1318170+

>mRNA_P-fluviatile_contig18.3231.1 ID=mRNA_P-fluviatile_contig18.3231.1|Name=mRNA_P-fluviatile_contig18.3231.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=390bp|location=Sequence derived from alignment at P-fluviatile_contig18:1315421..1318170+ (Porterinema fluviatile SAG_2381)
ATGATGGCAAAAATGATGGGCTTTCAGGGCCGCGTGGCCGGACATCTCAG
CACAGAGGCCACGGAAACACACGGCAAAAATGATGGGCTTTCAGGGCCGC
GTGGCCGGACATCTCAGCACAGAGGCCACGGAAACACACGTTTTCACCAG
CGATTTCCAGAACTACATCGAGAGCAGGGACAAGACATACTTCAGGACTC
GGGATCATTTCTCAGACTACGCGGAAGCCAAGGCCCGCGACCCATCTCGA
TCTAGTAAAAAATAGTTTTCACCAGCGATTTCCAGAACTACATCGAGAGC
AGGGACAAGACATACTTCAGGACTCGGGATCATTTCTCAGACTACGCGGA
AGCCAAGGCCCGCGACCCATCTCGATCTAGTAAAAAATAG
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