mRNA_P-fluviatile_contig18.3197.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3197.1
Unique NamemRNA_P-fluviatile_contig18.3197.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:894138..895226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1089
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3197.1prot_P-fluviatile_contig18.3197.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 894469..895077 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.3634126-UTR-P-fluviatile_contig18:894137..8944681622815748.3634126-UTR-P-fluviatile_contig18:894137..894468Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 894138..894468 +
1693563178.751337-UTR-P-fluviatile_contig18:894137..8944681693563178.751337-UTR-P-fluviatile_contig18:894137..894468Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 894138..894468 +
1622815748.3859847-UTR-P-fluviatile_contig18:895077..8952261622815748.3859847-UTR-P-fluviatile_contig18:895077..895226Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 895078..895226 +
1693563178.7708864-UTR-P-fluviatile_contig18:895077..8952261693563178.7708864-UTR-P-fluviatile_contig18:895077..895226Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 895078..895226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.3739707-CDS-P-fluviatile_contig18:894468..8950771622815748.3739707-CDS-P-fluviatile_contig18:894468..895077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 894469..895077 +
1693563178.7625148-CDS-P-fluviatile_contig18:894468..8950771693563178.7625148-CDS-P-fluviatile_contig18:894468..895077Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 894469..895077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3197.1

>prot_P-fluviatile_contig18.3197.1 ID=prot_P-fluviatile_contig18.3197.1|Name=mRNA_P-fluviatile_contig18.3197.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=203bp
MPQYLRRDSRIVPCGVQVASGRDGLADDPHWWLPADTRFRRLKGFAGRVN
PRSILLPFESRRSRFTHRTAPKAPNHVLPSCDIGWANRLLCLPLPTHSRI
FAFSDLRLHSPAFIDEAVEGVKERHANRRKPGRNATTRVLSRSRHSSAFL
FRRALWASVPSQQRGIVTRRATGSSHCLSFVALCFPYRHPRYSRSLSDST
LF*
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mRNA from alignment at P-fluviatile_contig18:894138..895226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3197.1 ID=mRNA_P-fluviatile_contig18.3197.1|Name=mRNA_P-fluviatile_contig18.3197.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1089bp|location=Sequence derived from alignment at P-fluviatile_contig18:894138..895226+ (Porterinema fluviatile SAG_2381)
TGAAGGACGACCTGTCGGTAAGGTTTCCTCTACAAAAAGGTGTATGGTGC
ATTGCTTTATTCTTCCGTCAACGTGGACTTGAGTTAATATCGTTTCGTGG
ATGGTGAAGGTGTATATATGCTTGCACTTGAAATCGTTTTTCCTTTGTTC
CAGTTGGTGGAACAGAACGATACTCCACACCGTTACGGCCGCAGCCTTTC
AGCCGTGCAACCTCCCCTCGCATGCGTCGCCATCGAAACCCCGGGGCGGG
GTATCCATTTTCGACTTTCACCGACGAGACTAGAGAGGGGATTTCGTACA
CCGATGAGCGGTGAGCGACCAGCTGTCCGCTATGCCGCAATATCTCCGGC
GGGACTCGCGCATCGTTCCTTGCGGTGTTCAAGTTGCCAGCGGGCGGGAT
GGCTTGGCGGACGACCCGCATTGGTGGCTGCCTGCTGATACACGCTTCAG
GCGACTCAAGGGATTCGCCGGCCGGGTAAATCCGCGCTCGATCTTGCTAC
CCTTTGAGTCCCGTCGAAGCCGATTTACACATCGCACTGCGCCGAAGGCT
CCAAACCATGTGTTGCCATCATGTGACATTGGATGGGCCAACCGGTTGCT
GTGTCTCCCTCTTCCCACGCACTCTAGGATTTTCGCTTTCTCCGATTTGC
GCTTGCACTCTCCCGCGTTCATTGACGAAGCCGTTGAAGGCGTCAAGGAG
AGACACGCAAACCGTAGGAAACCTGGGCGAAACGCGACGACGCGTGTGCT
CTCCAGATCTCGGCACAGCTCTGCTTTTTTGTTTCGCCGTGCGCTTTGGG
CATCCGTGCCATCGCAGCAACGGGGCATCGTAACAAGGAGAGCTACGGGT
AGTTCTCATTGTTTGTCATTCGTTGCCCTGTGCTTTCCATACCGACACCC
CCGATACTCTCGAAGTTTGAGTGATTCCACGTTGTTCTGACAGTTGTCGT
TTTGCGCCGGAAGAATTTACAGTTTACGACGTTCGCCTCCTGCCAGAAAG
GCTTCACCTTCTCCCTCGCTCCCTCTCTTCATCCCCCGCTCTCGTGTTCT
CGACGCCAAACACGCCCTCAGGCTCCGGTCCCGAAGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:894138..895226+

>mRNA_P-fluviatile_contig18.3197.1 ID=mRNA_P-fluviatile_contig18.3197.1|Name=mRNA_P-fluviatile_contig18.3197.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1218bp|location=Sequence derived from alignment at P-fluviatile_contig18:894138..895226+ (Porterinema fluviatile SAG_2381)
ATGCCGCAATATCTCCGGCGGGACTCGCGCATCGTTCCTTGCGGTGTTCA
AGTTGCCAGCGGGCGGGATGGCTTGGCGGACGACCCGCATTGGTGGCTGC
CTGCTGATACACGCTTCAGGCGACTCAAGGGATTCGCCGGCCGGGTAAAT
CCGCGCTCGATCTTGCTACCCTTTGAGTCCCGTCGAAGCCGATTTACACA
TCGCACTGCGCCGAAGGCTCCAAACCATGTGTTGCCATCATGTGACATTG
GATGGGCCAACCGGTTGCTGTGTCTCCCTCTTCCCACGCACTCTAGGATT
TTCGCTTTCTCCGATTTGCGCTTGCACTCTCCCGCGTTCATTGACGAAGC
CGTTGAAGGCGTCAAGGAGAGACACGCAAACCGTAGGAAACCTGGGCGAA
ACGCGACGACGCGTGTGCTCTCCAGATCTCGGCACAGCTCTGCTTTTTTG
TTTCGCCGTGCGCTTTGGGCATCCGTGCCATCGCAGCAACGGGGCATCGT
AACAAGGAGAGCTACGGGTAGTTCTCATTGTTTGTCATTCGTTGCCCTGT
GCTTTCCATACCGACACCCCCGATACTCTCGAAGTTTGAGTGATTCCACG
TTGTTCTGAATGCCGCAATATCTCCGGCGGGACTCGCGCATCGTTCCTTG
CGGTGTTCAAGTTGCCAGCGGGCGGGATGGCTTGGCGGACGACCCGCATT
GGTGGCTGCCTGCTGATACACGCTTCAGGCGACTCAAGGGATTCGCCGGC
CGGGTAAATCCGCGCTCGATCTTGCTACCCTTTGAGTCCCGTCGAAGCCG
ATTTACACATCGCACTGCGCCGAAGGCTCCAAACCATGTGTTGCCATCAT
GTGACATTGGATGGGCCAACCGGTTGCTGTGTCTCCCTCTTCCCACGCAC
TCTAGGATTTTCGCTTTCTCCGATTTGCGCTTGCACTCTCCCGCGTTCAT
TGACGAAGCCGTTGAAGGCGTCAAGGAGAGACACGCAAACCGTAGGAAAC
CTGGGCGAAACGCGACGACGCGTGTGCTCTCCAGATCTCGGCACAGCTCT
GCTTTTTTGTTTCGCCGTGCGCTTTGGGCATCCGTGCCATCGCAGCAACG
GGGCATCGTAACAAGGAGAGCTACGGGTAGTTCTCATTGTTTGTCATTCG
TTGCCCTGTGCTTTCCATACCGACACCCCCGATACTCTCGAAGTTTGAGT
GATTCCACGTTGTTCTGA
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