mRNA_P-fluviatile_contig18.3166.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3166.1
Unique NamemRNA_P-fluviatile_contig18.3166.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:587079..589983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3166.1prot_P-fluviatile_contig18.3166.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 587084..589983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3279047-UTR-P-fluviatile_contig18:587078..5870831622815746.3279047-UTR-P-fluviatile_contig18:587078..587083Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 587079..587083 +
1693563174.3704946-UTR-P-fluviatile_contig18:587078..5870831693563174.3704946-UTR-P-fluviatile_contig18:587078..587083Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 587079..587083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.3384535-CDS-P-fluviatile_contig18:587083..5873031622815746.3384535-CDS-P-fluviatile_contig18:587083..587303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 587084..587303 +
1693563174.3792481-CDS-P-fluviatile_contig18:587083..5873031693563174.3792481-CDS-P-fluviatile_contig18:587083..587303Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 587084..587303 +
1622815746.3513331-CDS-P-fluviatile_contig18:589786..5899831622815746.3513331-CDS-P-fluviatile_contig18:589786..589983Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 589787..589983 +
1693563174.5628388-CDS-P-fluviatile_contig18:589786..5899831693563174.5628388-CDS-P-fluviatile_contig18:589786..589983Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 589787..589983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3166.1

>prot_P-fluviatile_contig18.3166.1 ID=prot_P-fluviatile_contig18.3166.1|Name=mRNA_P-fluviatile_contig18.3166.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=139bp
MVGDANFFARKRKIFSAQQGTREIEPPEVPVLLMLIGLKASGKEGYEWQG
ELLYYCCSSPCSWLWASISFSEAGPPGAKRHTSSRWTLTFAGRAKSTAST
NLRSSIATTSRLRGWREGRNKGNLEGEGAAELSRVTSQV
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mRNA from alignment at P-fluviatile_contig18:587079..589983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3166.1 ID=mRNA_P-fluviatile_contig18.3166.1|Name=mRNA_P-fluviatile_contig18.3166.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2905bp|location=Sequence derived from alignment at P-fluviatile_contig18:587079..589983+ (Porterinema fluviatile SAG_2381)
TGACAATGGTGGGCGACGCAAATTTTTTTGCGAGGAAGCGGAAGATTTTC
TCGGCGCAGCAAGGGACGAGGGAGATAGAGCCTCCCGAAGTGCCGGTGCT
CCTGATGCTGATCGGGCTGAAAGCGTCGGGAAAGGAAGGCTACGAATGGC
AGGGAGAGTTACTCTACTACTGCTGTTCCTCTCCGTGTTCGTGGCTTTGG
GCGTCGATCTCTTTCTCAGAAGCAGGTGCGTGATCTTTGTGACGATGAGC
TTCCCTCGGCGCTTTTCTTGTGCAGTTTGCTGTATCTGACGACTTTTGCC
AGTTGCGAGCAGGAGTGAGTGCAAGCCGTGGCTACGCTTCAATCCCCGAT
AAAGTTCGAAAGAAAGAAGTGTTGAGAGCAACTTCGGCGAGTTTCGTCCG
GGTAAAGTCCCCCAAAAAAAAAACTTGCTTCAAATTGATTTCGTCGACCG
ATGGCTTTGGAAACAAAAGCCTCAGCCCGCCGATTACGGGAACGATGGGT
ACATCAGGCACCATCATTCAAAGCCCGCAGCAACCGACAAGGTGTTGAAA
TACAGAAGAGAGGAGGAAGCTTGCAGCGGTGGGAATGATGTCCAGGGAAC
CAAAATACGCACACATCTTGATCCCTTGGCCTCCGCTTAGTACACCAACC
GATACGTCTTCCTTATGAAAATTGGGTCGACGTACATCTTCATGAAGGAT
ACTCCTGTGATCGAAATCACGCGAATTGACGTCGAAATTAGTGTGTCTTT
TTGGGGGGGGCATAAAGGTCTGCTATCAGACGGTTCGAATGCACTTTTAA
TTTTGGCTATCGCGTGCGTCGTACTTTTTGTTGTGATCGCAGAGGGGGTA
GTTCATTCCGCAAATGATTGGCGGCGAACAGCAAGGGGATGGCGCGGTTT
TGCTGCTACAGCGCAGGGCAAGAGCGAACAAACGAAATCAGAAAGAGTTG
CAGGCCAAAGTCCCGGCAGGGGAGACTTCCACGAAACGAAGCAAATAATC
GGTCGAAGAAGATCGACGCGGTTTGGAACACATCCAACGACGGGAAAGAA
CAGGCTCAATCACAACGTGTGTTGATAGCGATGGGTCGGGATACCGTGTA
AACTGCTCTTACAAGGGAAACGTATCCTTCCATCTGTCGAGGACGGAACA
CTCGTGTCTATAATGGCGTCAGCGATAAGCCTTCCGCTCTGGTGAGCGCA
TTGTCGCGGGTTCGAATCCGGCCCTGTGTGCTTTCTCTTCTCGTGATGGT
GTCCACGATTGTTGTGCAGAGGCAGATCCAGAACCAAGAGCTGATGACCG
AAGTATCGGAGCTTTATTTTGATGAGTCGTGGCGAAGTTTGCTGACCCAC
TTAACACTAAATGACGATAGTGGAAAGAAAGCAGGGTTGTCTACTCGCTG
CAAGCCGGTTGGGTTCCGGTTACCCAAGATGAGCCTTCTTCGACGAAAAA
AAGGCTCGAAAAAAGGGGGATGATATAGATACTACCCTTACAAGGGAAGC
GTTTCCTAACCGTCTGTCGGGGACGGAACACTCTGTTCCACATCACATGT
ACATTAAAGGCGCAAAAGATGCGCAGAAGCTGCGTGTGTTTCGACTTTAA
CGATAACCGCTTCGGCCCCTAAACATCAACCACCGGAAAGGGCGACAACC
GTTGGAGACAAAACAAGTCGCCGAGATGGCATACAATCACACCTGCAATT
TTGGGGGTCGACTCACGCGTGCTTTTGTAAGCTTTTTACGCGGTATTATC
CGATCCGAAGGATTGTAAGGACAAGATATTGAGTGCAGGTCTGAAGCATG
ATGGAAGACATGAAATATCCTCACGAGTTTCGAAGCATTTCGAGTACGCA
CGGCTACCCCACACCTATAAAAGTGATCACCTGAATTTTATGGATGGGTC
GATGATTTTGCAGAATACCTAAACGAACTCAAGTAGAGAGTCGGTCTCAA
ATCTTTGTACATGAGGTCGAATTGTGTCGCCGGGTAATCGCTGCGGAGAA
TCACATAAAGCACGCTCATCATTCGTGCTTTAGGACGCGCAAGTCCGATG
GGTTACCTTGTGGTCTATACGAGAGTGCGTCCATCGTACGGGCACTCATT
GTATCCCCATCTTTGGTGCACCGTCAATGACATAATTATCTGGATTCAAG
CTCGCGTCCTCTGCCTTCGCGACACAGGTTCTATCGAAATCGGGATCGAG
AACGTTACCGCTGACTATTTGCATGTCGTCCGAACACGAAGATCTCCCAT
TCTAGGCGACGTGAATTCGATCAAAGAGTTCGACTGCATTGGGGAATTGC
TTCGGCGCCCGGGCTCAAAATCTCAAGCTAGCGTACTGCTGCAAGTCAAA
ACTGGTCGTGGCGAGCTTCGGCTAGGTGCCGCGAAATAGAATGGTTGATT
GGAGCTATTTTTGAGGAGCACACTCGAGGTCTCACGCTTTCCAATGTTGA
AAATTTCCCCAAAATATCCCCACCGTGCAGCTGTACACTCCAGGTGTCTA
ACACAGTACAGATGTCGACAGTTGTTCGTAGCGTTGCGGCACACCAAGAA
GACGGTTCGACGCGCAAACGTTCTAAACCTCAAACAAAGTACTCACGGTG
TCGTCTATTATGCAGTATCGAATCTGCGACAAATTTAATGCACTGCCTTT
GTAGTGGACGACGTGGCGCGCCTCTACTACACTCCGAACCTGATACCGTG
CTGTCCAGGCCCACCGGGTGCGAAGCGGCACACTTCTTCCCGATGGACAC
TCACGTTTGCCGGCCGCGCAAAATCGACGGCGTCGACAAACCTGCGGTCG
AGCATCGCAACAACGAGTCGGTTGCGGGGGTGGAGGGAAGGACGTAACAA
GGGCAATCTGGAGGGCGAAGGGGCTGCTGAGTTATCTCGTGTTACATCTC
AGGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:587079..589983+

>mRNA_P-fluviatile_contig18.3166.1 ID=mRNA_P-fluviatile_contig18.3166.1|Name=mRNA_P-fluviatile_contig18.3166.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig18:587079..589983+ (Porterinema fluviatile SAG_2381)
ATGGTGGGCGACGCAAATTTTTTTGCGAGGAAGCGGAAGATTTTCTCGGC
GCAGCAAGGGACGAGGGAGATAGAGCCTCCCGAAGTGCCGGTGCTCCTGA
TGCTGATCGGGCTGAAAGCGTCGGGAAAGGAAGGCTACGAATGGCAGGGA
GAGTTACTCTACTACTGCTGTTCCTCTCCGTGTTCGTGGCTTTGGGCGTC
GATCTCTTTCTCAGAAGCAGATGGTGGGCGACGCAAATTTTTTTGCGAGG
AAGCGGAAGATTTTCTCGGCGCAGCAAGGGACGAGGGAGATAGAGCCTCC
CGAAGTGCCGGTGCTCCTGATGCTGATCGGGCTGAAAGCGTCGGGAAAGG
AAGGCTACGAATGGCAGGGAGAGTTACTCTACTACTGCTGTTCCTCTCCG
TGTTCGTGGCTTTGGGCGTCGATCTCTTTCTCAGAAGCAGGCCCACCGGG
TGCGAAGCGGCACACTTCTTCCCGATGGACACTCACGTTTGCCGGCCGCG
CAAAATCGACGGCGTCGACAAACCTGCGGTCGAGCATCGCAACAACGAGT
CGGTTGCGGGGGTGGAGGGAAGGACGTAACAAGGGCAATCTGGAGGGCGA
AGGGGCTGCTGAGTTATCTCGTGTTACATCTCAGGTCGCCCACCGGGTGC
GAAGCGGCACACTTCTTCCCGATGGACACTCACGTTTGCCGGCCGCGCAA
AATCGACGGCGTCGACAAACCTGCGGTCGAGCATCGCAACAACGAGTCGG
TTGCGGGGGTGGAGGGAAGGACGTAACAAGGGCAATCTGGAGGGCGAAGG
GGCTGCTGAGTTATCTCGTGTTACATCTCAGGTC
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