mRNA_P-fluviatile_contig18.3124.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3124.1
Unique NamemRNA_P-fluviatile_contig18.3124.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig18.3124.1 vs. uniprot
Match: D7G7U1_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 7.000e-109
Identity = 167/299 (55.85%), Postives = 208/299 (69.57%), Query Frame = 1 
Query:  337 VRAISRASDLLRLAQTLNQGRIDTCCRTTFTAALRDGNPAIVDMWLRHGKQHGGSCFLEAFRSWGKGVDVAGQ--NKIGSQRPPCIPLHLSCHSGSPEIVSVLLQFMADSYSSKDCRAMINARDSNGRTALHLSSWSPRPQCPGKRNTITRCLLAHGADVXXXXXXXXXXXXWACRTADRFAI--LLKAGANPMHEDDRSLTSLETVSGRRYRRLLDAVLRKHASKKLYLQLRARIAAKAAVKSIMHHFVPVCDTCRVRPAGTCDTLKRNNFAAWLYKHQRWPKAGEGKWKEVRSSCVE 1221
            +R IS+ASDL RLA+ L+  +I+T CR TF AA+RD NPA V+MWL HGK+H G+ FL+AFR+WG+    AG    + G++ PP IPLHLSCH+G+PEIVSVLL+FM +SYS  D  AM+NARD NGRTALHLSSWSPR +CPG RN I R LL+HGA+V             ACR AD FA+                     ET + +R+ RLLDA+ RK+ S + YL L AR+ AK +V  IM  FVP+CDTC+VRPA  C+T KR++FAAW++KH RWPKAGEGKW+EVR SCVE
Sbjct:    2 IREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAYFLDAFRAWGEAA-AAGHVGGRGGNRSPPSIPLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVRELLSHGANVKAEDNHGRTALHEACRAADHFAVETXXXXXXXXXXXXXXXXXXXETATAKRHWRLLDALFRKNLSTRRYLHLCARVTAKTSVSRIMRRFVPLCDTCQVRPAEACNTQKRDDFAAWVFKHHRWPKAGEGKWREVRPSCVE 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U1_ECTSI7.000e-10955.85Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:250150..254443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.8
Seed ortholog evalue2.3e-88
Seed eggNOG ortholog2880.D7G7U1
KEGG koko:K20175
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size1233
Cds size1233
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3124.1prot_P-fluviatile_contig18.3124.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 250150..254443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.7297752-CDS-P-fluviatile_contig18:250149..2504201622815751.7297752-CDS-P-fluviatile_contig18:250149..250420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 250150..250420 -
1693563185.2363632-CDS-P-fluviatile_contig18:250149..2504201693563185.2363632-CDS-P-fluviatile_contig18:250149..250420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 250150..250420 -
1622815751.739098-CDS-P-fluviatile_contig18:251176..2512621622815751.739098-CDS-P-fluviatile_contig18:251176..251262Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 251177..251262 -
1693563185.2453735-CDS-P-fluviatile_contig18:251176..2512621693563185.2453735-CDS-P-fluviatile_contig18:251176..251262Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 251177..251262 -
1622815751.7482085-CDS-P-fluviatile_contig18:252258..2523521622815751.7482085-CDS-P-fluviatile_contig18:252258..252352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 252259..252352 -
1693563185.252838-CDS-P-fluviatile_contig18:252258..2523521693563185.252838-CDS-P-fluviatile_contig18:252258..252352Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 252259..252352 -
1622815751.7574503-CDS-P-fluviatile_contig18:252844..2529931622815751.7574503-CDS-P-fluviatile_contig18:252844..252993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 252845..252993 -
1693563185.2663279-CDS-P-fluviatile_contig18:252844..2529931693563185.2663279-CDS-P-fluviatile_contig18:252844..252993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 252845..252993 -
1622815751.7664516-CDS-P-fluviatile_contig18:253235..2537401622815751.7664516-CDS-P-fluviatile_contig18:253235..253740Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 253236..253740 -
1693563185.2747931-CDS-P-fluviatile_contig18:253235..2537401693563185.2747931-CDS-P-fluviatile_contig18:253235..253740Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 253236..253740 -
1622815751.775322-CDS-P-fluviatile_contig18:254315..2544431622815751.775322-CDS-P-fluviatile_contig18:254315..254443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 254316..254443 -
1693563185.2826254-CDS-P-fluviatile_contig18:254315..2544431693563185.2826254-CDS-P-fluviatile_contig18:254315..254443Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 254316..254443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3124.1

>prot_P-fluviatile_contig18.3124.1 ID=prot_P-fluviatile_contig18.3124.1|Name=mRNA_P-fluviatile_contig18.3124.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=411bp
MSKDAIASWLRVRQYTSVARKFLKTSDESNLYSGNAALCLPKSAQPLQHH
RIFWTEETTSASLREGMQRAIEGEKQPAPQTSEDFQQPGPASSAVTSIKN
QTKTKRLSPADTVRAISRASDLLRLAQTLNQGRIDTCCRTTFTAALRDGN
PAIVDMWLRHGKQHGGSCFLEAFRSWGKGVDVAGQNKIGSQRPPCIPLHL
SCHSGSPEIVSVLLQFMADSYSSKDCRAMINARDSNGRTALHLSSWSPRP
QCPGKRNTITRCLLAHGADVNAKDNHGRTSLHWACRTADRFAILLKAGAN
PMHEDDRSLTSLETVSGRRYRRLLDAVLRKHASKKLYLQLRARIAAKAAV
KSIMHHFVPVCDTCRVRPAGTCDTLKRNNFAAWLYKHQRWPKAGEGKWKE
VRSSCVENVD*
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mRNA from alignment at P-fluviatile_contig18:250150..254443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3124.1 ID=mRNA_P-fluviatile_contig18.3124.1|Name=mRNA_P-fluviatile_contig18.3124.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4294bp|location=Sequence derived from alignment at P-fluviatile_contig18:250150..254443- (Porterinema fluviatile SAG_2381)
ATGAGCAAGGATGCGATCGCATCGTGGCTTCGCGTCCGGCAGTACACCTC
TGTGGCCAGGAAGTTCCTCAAAACGAGCGACGAAAGCAACCTCTACTCAG
GAAATGCCGCCTTATGTCTACCGAAAAGGTATTTTGTAGCTTGTCACTAG
TTGGTGTACAATTGCTGTAAATACGTCACTCGTAGATCAAAAGAACGAGC
CTGTGTATGGGCTCAGGCAAGACTGGGTGTGATTCGATACGTGGTGAAAG
GAACCATTGCTTTGTGAGCTTTATGGAGCGCGTCCTCTCCGCCTGTCTGG
CAAATGGACCCTCATCTCAATTTATGTACTTCCAAGATAGCGTGAACCCG
ACCTAGAATTAGACTACGTGAAAATCAAAGGTTTCCAGAGGGCTCGTAAA
GCGTGAACGTAGGATATGCATTGCTTAATCGCTGGGGGAATTGGTGCTCG
GAAAGTATATCAGAGCCCACGAAACTGTGCGTTAAGGTTGGTCTCCTGGC
ACTGTTGTGCTTTAACAAGAAATGGGTGGTATTTTGTCGACACACACTTG
TCAATTACAACACGTCTAAATTTAATTACTACTTTGAATGAGTCCCCTTC
CTTTGTTTGCAGACAGCTCTCACCTCGTTTTGAGTTGTGGATGCTGTGAT
CACCTTTCTACTTGCTCATTCGCAACCCCTACTTATTTTCAATTTTTATC
CAGCGCGCAGCCGTTGCAGCATCACCGTATCTTCTGGACAGAAGAGACTA
CATCTGCATCGCTGCGGGAAGGCATGCAGCGAGCGATAGAAGGCGAAAAG
CAACCTGCACCTCAAACGAGCGAGGATTTCCAGCAGCCGGGGCCTGCTTC
CTCGGCGGTAACAAGCATAAAAAACCAAACGAAAACCAAGCGACTGAGTC
CTGCTGACACTGTTCGCGCGATTTCACGCGCGTCGGATCTCCTGAGGCTA
GCTCAAACGTTGAACCAAGGGAGAATCGACACTTGTTGCAGGACTACCTT
TACCGCGGCGTTGCGAGATGGAAATCCGGCCATCGTCGACATGTGGCTTC
GTCATGGAAAACAGCACGGGGGCTCCTGTTTTCTCGAAGCCTTCCGTTCT
TGGGGGAAAGGTGTCGATGTTGCTGGACAAAACAAAATTGGGTCCCAACG
TCCACCTTGTATCCCGCTGCACCTGTCGTGTCACTCGGGGTCACCTGAAA
TCGTTTCGGTATGTGCTTCGAGTCAATATTCCAAGATTTCGTGAACGATT
TTTTTTTGAAACCCCGAATGACTGCTGTACGCGGTCTTGCATTTGCAGCC
GACGCATTAGTGAATGATCATTTAATCTCCGTGCAATGGGTGTGTTTTGA
GGGAGAAGGTGCTTCCGATCGACCGACCGGAAAAGTGTTTCAGAGACATC
CCGGGGCTTCGTGGCAATCACCGGTCCGTGAAAACGTTTTGCCAAAACAG
GTGCTTCTGCAGTTCATGGCGGATTCATACTCTAGCAAGGATTGCCGGGC
CATGATTAATGCCAGGGACTCCAACGGAAGAACCGCGCTGCATCTCTCCA
GCTGGTCGCCAAGGCCTCAATGCCCCGGGAAAAGGAACACGATTACCAGG
TAACTTTTCCTCGCTCATAATACGTTAGGTTGCTGTGCGGCTTGAGCGCA
TGCTTCCTGTCGTTTTTATTCCTTACTACTGCATGCTGCTCGCTGTCATT
TGGATAAATGGAAAGAAACATGAAATGTTGTTTGATTGCTTCAAAGGGGT
CTTTGACTCGGAAATTCTCTGCGACAGATAATGTCAGGTTTTGCACCAAA
TCACACGCTTCAGCATCCACTCTTCCCTCTGACTTCTACCTCAATATGAG
TGGTGATATACTCAACTTCTTTACTTCTCGCCCCCGTTCGCTTGGTCCCA
CGATTCCGCGTTTTTTGTGATTTGATCACCAGAGTTCAAATATTTGCCGA
ATCTTTGCATCATGCCAAGGACACCCAATGGCGAGGTCGATCCTGGCCGT
GATTACACAACCAGGAGGTAACGAAGACTTGAATGTTATGCGGAAGAAAG
TCGCGTGAAACGCTGTGGCGAATGAATGGGTTGCCGCCCAGGTGCTTGCT
AGCTCATGGCGCAGACGTCAACGCGAAGGACAATCATGGACGGACATCGC
TTCACTGGGCTTGCCGCACTGCCGATCGCTTCGCTGTGGAGGCAAGTAAG
ATATATTCAGGCGCTGAGAGTGGCCGCTTGGTTGAATAGCGTCTACTACG
AAATGAACCCTTTTTGTAGTCCCAACGGGGTTTGCTTTCTTGTGATCACA
GAAGTCATCCCGGTGGGATAGACTTGTAGGATGTACGGACTCGATGTTCG
GGCTGACTGCGACGTTATCGAAATTGTTTTGAATATGAAAAGGACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACGACAACGACA
ACAACGACAACTCCCATCGCAATGGCAGGGCCAAAATGTCCTGGCGGGGG
GCGTGAATACCCGCCGCAGCTACAGCATTGTTCGCCGTTCAATTTTCGGC
AGTACATAAGAGTGGATTGCCCGCCGTGCTATGTGCCTCTCCTCATGTAT
CCTTGTGCTCTCACTGGATTTTGGTGAGGCCTTTTGAGCCGGTAGGGCTC
CTCGCCTTGAATTTTATTACCCGCTCTACTCCCGAGTATTTCGAAAGAGA
TCAAGCGAAGCGACGGTATCCGACACATTTTCCAACAGACCCCCTGCTTC
CATTTTCGTTCCGTTACCGAACCTTTATTTGATGCCCGAGATTCGGAATG
GAGACGGAAGACGAAGGTTTGTATCCATTCGTCCGAGTGAGTGCAGGGGT
CATGGGGGGTGACGGGTTAAAGGTTCTTTATCACTGAAGGGGAGATATGA
AATCCTCGACCCGTTCACCTGATCCGTCGTCTCTTTTAGAGTTATTGAGC
GGATCGACACGAAAAGATCGCTCGAAAGTCAGTCGGACACAGCGGAATGC
GTTCTGAGGGCGGAATCATTTGAAACTTTCAAGTAACATGCGTCCGTTCA
ATAAGTACAATGTCGTATGGTGCAAGAGCGAACGTCTCATACCCACTACG
CTCACTCGGCTGCAACCAATGAGTGCGGCAAACGTGCGCTTCTCGATTTC
CATGCCCGCTTTTGGGCAATAAACGTAGCAGATTCTCTTGAAGGCTGGCG
CGAATCCAATGCACGAGGATGATCGGAGCCTCACTTCCCTAGAAACGGTT
TCTGGGCGAAGATATCGGTGAGCGGGCACATGCATTCATTCGTGTGTCAC
CTATTTACAAGCGAACAGCCTCCGCGGTAGCAATCCGTACGTACACCATC
GCTCGGTTGTGCACATCGTGCATTCGCATGATCCCAGAGCTGGAATAAAG
GCAGCCAGCATGCTTTTGCGATGCAGAATATTTTGTCTAATATTAGTATC
AAATCTGGTGTGCCTAGCAGCATCTTCACTCGAGCTCTGGGGTCATCCGA
ATGCACGATGTGCAAATATTTGCGATGGCATCTTGGAAATGATTAGTGGT
GATCTTTGGAAAACAGTGCGAGAACCTCCAGACCTTCGATTTTTCTTTTT
ATTGGGAAGGGGGGTGGCGGGAAGAGAGGGAGTGACAGAATCGTGAGCTT
CCGCGTTTTTCCGCCGATCGGGCGGGGAAGGGGCGGACGGGCGCATTCAA
ATGTCGCTCACTTTTCATCACCCCCTTTCTGATTCTGCGTGTCCAACGCA
ACGGGACATCCAGTCGGTCCGTGCTCTCTCGTGCTGGGTCGCCACGGAAT
GTAGACTATGTGTGATCTCGCGGACAGCTCATCACGTATTATTTGTGGAA
GCTGTATCTATGCGTTTGATGAAGAATTCGTTCGCTGGGTCATTCCCTCG
CTCAATTCGGCTGATTTGAGCGTTCCTTCGGCTTCCGACATTCGGTGTAC
GCTGCGCACTACTTCCGCTTTCCCACGCCGTGATTTCTCGGTGGATGTGG
GACTATACCTTCTCCAACCCAAGGCGTCTCCTCGATGCGGTGCTCCGGAA
ACACGCATCGAAGAAGCTCTACCTCCAGCTGCGAGCCAGAATCGCCGCAA
AGGCTGCCGTGAAAAGTATCATGCACCACTTTGTGCCGGTGTGCGACACC
TGCCGCGTGCGCCCGGCGGGAACATGCGACACGCTCAAGAGGAACAATTT
CGCGGCGTGGTTGTACAAACACCAGCGGTGGCCGAAGGCCGGGGAAGGGA
AGTGGAAAGAAGTGCGGTCGTCCTGCGTGGAGAACGTGGACTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:250150..254443-

>mRNA_P-fluviatile_contig18.3124.1 ID=mRNA_P-fluviatile_contig18.3124.1|Name=mRNA_P-fluviatile_contig18.3124.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2466bp|location=Sequence derived from alignment at P-fluviatile_contig18:250150..254443- (Porterinema fluviatile SAG_2381)
ATGAGCAAGGATGCGATCGCATCGTGGCTTCGCGTCCGGCAGTACACCTC
TGTGGCCAGGAAGTTCCTCAAAACGAGCGACGAAAGCAACCTCTACTCAG
GAAATGCCGCCTTATGTCTACCGAAAAGATGAGCAAGGATGCGATCGCAT
CGTGGCTTCGCGTCCGGCAGTACACCTCTGTGGCCAGGAAGTTCCTCAAA
ACGAGCGACGAAAGCAACCTCTACTCAGGAAATGCCGCCTTATGTCTACC
GAAAAGCGCGCAGCCGTTGCAGCATCACCGTATCTTCTGGACAGAAGAGA
CTACATCTGCATCGCTGCGGGAAGGCATGCAGCGAGCGATAGAAGGCGAA
AAGCAACCTGCACCTCAAACGAGCGAGGATTTCCAGCAGCCGGGGCCTGC
TTCCTCGGCGGTAACAAGCATAAAAAACCAAACGAAAACCAAGCGACTGA
GTCCTGCTGACACTGTTCGCGCGATTTCACGCGCGTCGGATCTCCTGAGG
CTAGCTCAAACGTTGAACCAAGGGAGAATCGACACTTGTTGCAGGACTAC
CTTTACCGCGGCGTTGCGAGATGGAAATCCGGCCATCGTCGACATGTGGC
TTCGTCATGGAAAACAGCACGGGGGCTCCTGTTTTCTCGAAGCCTTCCGT
TCTTGGGGGAAAGGTGTCGATGTTGCTGGACAAAACAAAATTGGGTCCCA
ACGTCCACCTTGTATCCCGCTGCACCTGTCGTGTCACTCGGGGTCACCTG
AAATCGTTTCGCGCGCAGCCGTTGCAGCATCACCGTATCTTCTGGACAGA
AGAGACTACATCTGCATCGCTGCGGGAAGGCATGCAGCGAGCGATAGAAG
GCGAAAAGCAACCTGCACCTCAAACGAGCGAGGATTTCCAGCAGCCGGGG
CCTGCTTCCTCGGCGGTAACAAGCATAAAAAACCAAACGAAAACCAAGCG
ACTGAGTCCTGCTGACACTGTTCGCGCGATTTCACGCGCGTCGGATCTCC
TGAGGCTAGCTCAAACGTTGAACCAAGGGAGAATCGACACTTGTTGCAGG
ACTACCTTTACCGCGGCGTTGCGAGATGGAAATCCGGCCATCGTCGACAT
GTGGCTTCGTCATGGAAAACAGCACGGGGGCTCCTGTTTTCTCGAAGCCT
TCCGTTCTTGGGGGAAAGGTGTCGATGTTGCTGGACAAAACAAAATTGGG
TCCCAACGTCCACCTTGTATCCCGCTGCACCTGTCGTGTCACTCGGGGTC
ACCTGAAATCGTTTCGGTGCTTCTGCAGTTCATGGCGGATTCATACTCTA
GCAAGGATTGCCGGGCCATGATTAATGCCAGGGACTCCAACGGAAGAACC
GCGCTGCATCTCTCCAGCTGGTCGCCAAGGCCTCAATGCCCCGGGAAAAG
GAACACGATTACCAGGTGCTTCTGCAGTTCATGGCGGATTCATACTCTAG
CAAGGATTGCCGGGCCATGATTAATGCCAGGGACTCCAACGGAAGAACCG
CGCTGCATCTCTCCAGCTGGTCGCCAAGGCCTCAATGCCCCGGGAAAAGG
AACACGATTACCAGGTGCTTGCTAGCTCATGGCGCAGACGTCAACGCGAA
GGACAATCATGGACGGACATCGCTTCACTGGGCTTGCCGCACTGCCGATC
GCTTCGCTGTGCTTGCTAGCTCATGGCGCAGACGTCAACGCGAAGGACAA
TCATGGACGGACATCGCTTCACTGGGCTTGCCGCACTGCCGATCGCTTCG
CTATTCTCTTGAAGGCTGGCGCGAATCCAATGCACGAGGATGATCGGAGC
CTCACTTCCCTAGAAACGGTTTCTGGGCGAAGATATCGATTCTCTTGAAG
GCTGGCGCGAATCCAATGCACGAGGATGATCGGAGCCTCACTTCCCTAGA
AACGGTTTCTGGGCGAAGATATCGGCGTCTCCTCGATGCGGTGCTCCGGA
AACACGCATCGAAGAAGCTCTACCTCCAGCTGCGAGCCAGAATCGCCGCA
AAGGCTGCCGTGAAAAGTATCATGCACCACTTTGTGCCGGTGTGCGACAC
CTGCCGCGTGCGCCCGGCGGGAACATGCGACACGCTCAAGAGGAACAATT
TCGCGGCGTGGTTGTACAAACACCAGCGGTGGCCGAAGGCCGGGGAAGGG
AAGTGGAAAGAAGTGCGGTCGTCCTGCGTGGAGAACGTGGACTGAGCGTC
TCCTCGATGCGGTGCTCCGGAAACACGCATCGAAGAAGCTCTACCTCCAG
CTGCGAGCCAGAATCGCCGCAAAGGCTGCCGTGAAAAGTATCATGCACCA
CTTTGTGCCGGTGTGCGACACCTGCCGCGTGCGCCCGGCGGGAACATGCG
ACACGCTCAAGAGGAACAATTTCGCGGCGTGGTTGTACAAACACCAGCGG
TGGCCGAAGGCCGGGGAAGGGAAGTGGAAAGAAGTGCGGTCGTCCTGCGT
GGAGAACGTGGACTGA
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