mRNA_P-fluviatile_contig17.3095.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.3095.1
Unique NamemRNA_P-fluviatile_contig17.3095.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.280e-35
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQG 198
            MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQL+YQKMDVEYSRVATRGVGAELPFQTKHLQG
Sbjct:  150 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQG 215
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: D8LJK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK2_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.830e-33
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            MGMVATQRT  MFGV KRSGVHKKLSLCGLWEKLQLLY KMD+EYSRV TRG+GAELPFQTKHLQ
Sbjct:    1 MGMVATQRT--MFGVTKRSGVHKKLSLCGLWEKLQLLYHKMDIEYSRVGTRGMGAELPFQTKHLQ 63
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5JYU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.780e-22
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            +GMVATQRTEGMFGVAK+SG+HK LSLC LW++LQ +YQ MD+E+ RVA+  V  EL F TKHL+
Sbjct:   58 LGMVATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTMDIEHGRVASPAVKLELAFPTKHLE 122
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            +GMVATQRTEG+FGVAKRSGV KKLSLC LW++LQ L + + +E +R+ T  +   + F+ KH++
Sbjct:  300 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDKHVE 364
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-14
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            +GMVATQRTEG+FGVAKRSGV KKLSLC LW++LQ + + + +E +R+AT  +   + F+ KH++
Sbjct:  386 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVE 450
[Close]
BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-14
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            +GMVATQRTEG+FGVAK SGV KKLSLC LW++LQ L + + +E +R+AT  +GA + F   H++
Sbjct:  771 LGMVATQRTEGLFGVAKSSGVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVE 835
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BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.530e-14
Identity = 33/45 (73.33%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEY 135
            +GMVAT+RTEGMFGVAK+SG+HKKLSLC LW++LQ +YQ MD+E+
Sbjct:  630 LGMVATKRTEGMFGVAKKSGIHKKLSLCALWDRLQHVYQTMDIEH 674
[Close]
BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5KWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.880e-14
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATR 153
            +GM ATQRTEGMFGVAK+SG+HK LSLC LW++LQ +YQ +D+E+ R  T+
Sbjct:  106 LGMFATQRTEGMFGVAKKSGIHKNLSLCALWDRLQHVYQTVDIEHGREKTK 156
[Close]
BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5KRH9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.820e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVAT 150
            +GMVATQRTEGMF VAK+SG+HKKLSLC LW++LQ +YQ MD+E+   +T
Sbjct:  520 LGMVATQRTEGMFWVAKKSGIHKKLSLCALWDRLQHVYQTMDIEHGSNST 569
[Close]
BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.970e-14
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVATRGVGAELPFQTKHLQ 195
            +GMVATQRTEG+FGVAKRSGV KKLSLC LW++LQ L + + +E +R+AT  +   + F+ K ++
Sbjct:  143 LGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKLVE 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.3095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JY17_9PHAE2.280e-3598.48SWIM-type domain-containing protein n=3 Tax=Ectoca... [more]
D8LJK2_ECTSI4.830e-3389.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYU5_9PHAE9.780e-2267.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV0_9PHAE1.090e-1455.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM8_9PHAE1.100e-1455.38MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBY4_9PHAE1.130e-1456.92SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZB4_9PHAE1.530e-1473.33SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWR3_9PHAE1.880e-1464.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRH9_9PHAE2.820e-1468.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXC0_9PHAE6.970e-1455.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:2802752..2803634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size287
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.3095.1prot_P-fluviatile_contig17.3095.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 2802752..2803634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.875595-CDS-P-fluviatile_contig17:2802751..28027791622815745.875595-CDS-P-fluviatile_contig17:2802751..2802779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2802752..2802779 -
1693563173.8820212-CDS-P-fluviatile_contig17:2802751..28027791693563173.8820212-CDS-P-fluviatile_contig17:2802751..2802779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2802752..2802779 -
1622815745.8882968-CDS-P-fluviatile_contig17:2803070..28031871622815745.8882968-CDS-P-fluviatile_contig17:2803070..2803187Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2803071..2803187 -
1693563173.8943372-CDS-P-fluviatile_contig17:2803070..28031871693563173.8943372-CDS-P-fluviatile_contig17:2803070..2803187Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2803071..2803187 -
1622815745.9004028-CDS-P-fluviatile_contig17:2803494..28036341622815745.9004028-CDS-P-fluviatile_contig17:2803494..2803634Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2803495..2803634 -
1693563173.9030948-CDS-P-fluviatile_contig17:2803494..28036341693563173.9030948-CDS-P-fluviatile_contig17:2803494..2803634Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2803495..2803634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.3095.1

>prot_P-fluviatile_contig17.3095.1 ID=prot_P-fluviatile_contig17.3095.1|Name=mRNA_P-fluviatile_contig17.3095.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=95bp
MGMVATQRTEGMFGVAKRSGVHKKLSLCGLWEKLQLLYQKMDVEYSRVAT
RGVGAELPFQTKHLQGSSPRSRKSSNGLAQASTAKWRLGPRLADR
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mRNA from alignment at P-fluviatile_contig17:2802752..2803634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.3095.1 ID=mRNA_P-fluviatile_contig17.3095.1|Name=mRNA_P-fluviatile_contig17.3095.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=883bp|location=Sequence derived from alignment at P-fluviatile_contig17:2802752..2803634- (Porterinema fluviatile SAG_2381)
ATGGGTATGGTTGCCACCCAGCGCACCGAGGGTATGTTCGGGGTGGCGAA
GAGATCCGGAGTTCACAAGAAGCTGTCCCTGTGCGGTCTGTGGGAGAAGC
TCCAACTTCTGTACCAGAAGATGGACGTCGAGTACAGCAGGTGAGTTCCA
CTAAGTTACAGCCTTGGAGCGGCGCCATCGCGTTTGGTACCTGAACATAG
ACGGTGAACTAGCCGCGCGTATTCTGCCCCGGATGTTGTGCCATCAACGA
AAACTCTGCGACTATTCTGAACCTCAGTCATCTCAGAGGCATTGGGTAAA
GTCTCAAAAATGGGCTTGTGTCCACCCTATCCACTGACGACAACGTTGGC
CGCCACCCATGAGCATCGTTTCTGTTGTTGCCCCGTAGCGTAATGTCAAA
CGGTTATAACTCCTTTATAAACACTCCGTCCGACCTCGTTCGCTCAGGGT
CGCAACGAGAGGCGTGGGAGCGGAGTTGCCATTCCAGACGAAGCATCTGC
AGGGATCTTCGCCCCGATCCAGGAAGAGCTCAAACGGGTTGGCGCAAGCC
AGTACTGCCAAGTGGTGAGAACCTCGATGGCTTCATTGCGTTCATGCACC
GCCCCCCTGCCATCCCGGGGATAAATATCTAGGTGGTCTCATCTTCATGC
GACGATGAGAGGCCCAGCGTCAAAATGCTTTTCCAATTTCTGAGCAGAAA
AGGCCCAGCGTCAAAATATTGCCTTTTCGAGGCCGTTTTTCGAGGCAGTT
CCTTGTGCGCGTACCTCACGCGATCTTTAAGACTAAATATGACTAAATAC
CGGACTAAATATGTGCCCCCCTCAACACCTCATCCTGATCCGCTCCATTC
CGCAGGAGGCTAGGGCCGAGGTTGGCGGATCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:2802752..2803634-

>mRNA_P-fluviatile_contig17.3095.1 ID=mRNA_P-fluviatile_contig17.3095.1|Name=mRNA_P-fluviatile_contig17.3095.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=570bp|location=Sequence derived from alignment at P-fluviatile_contig17:2802752..2803634- (Porterinema fluviatile SAG_2381)
ATGGGTATGGTTGCCACCCAGCGCACCGAGGGTATGTTCGGGGTGGCGAA
GAGATCCGGAGTTCACAAGAAGCTGTCCCTGTGCGGTCTGTGGGAGAAGC
TCCAACTTCTGTACCAGAAGATGGACGTCGAGTACAGCAGATGGGTATGG
TTGCCACCCAGCGCACCGAGGGTATGTTCGGGGTGGCGAAGAGATCCGGA
GTTCACAAGAAGCTGTCCCTGTGCGGTCTGTGGGAGAAGCTCCAACTTCT
GTACCAGAAGATGGACGTCGAGTACAGCAGGGTCGCAACGAGAGGCGTGG
GAGCGGAGTTGCCATTCCAGACGAAGCATCTGCAGGGATCTTCGCCCCGA
TCCAGGAAGAGCTCAAACGGGTTGGCGCAAGCCAGTACTGCCAAGTGGGT
CGCAACGAGAGGCGTGGGAGCGGAGTTGCCATTCCAGACGAAGCATCTGC
AGGGATCTTCGCCCCGATCCAGGAAGAGCTCAAACGGGTTGGCGCAAGCC
AGTACTGCCAAGTGGAGGCTAGGGCCGAGGTTGGCGGATCGCGAGGCTAG
GGCCGAGGTTGGCGGATCGC
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