mRNA_P-fluviatile_contig17.3057.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.3057.1
Unique NamemRNA_P-fluviatile_contig17.3057.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.3057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:2314706..2315806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size641
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.3057.1prot_P-fluviatile_contig17.3057.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 2314706..2315593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.8127136-CDS-P-fluviatile_contig17:2314705..23151041622815717.8127136-CDS-P-fluviatile_contig17:2314705..2315104Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2314706..2315104 -
1693563017.2649088-CDS-P-fluviatile_contig17:2314705..23151041693563017.2649088-CDS-P-fluviatile_contig17:2314705..2315104Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2314706..2315104 -
1622815717.825364-CDS-P-fluviatile_contig17:2315566..23155931622815717.825364-CDS-P-fluviatile_contig17:2315566..2315593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2315567..2315593 -
1693563017.2727995-CDS-P-fluviatile_contig17:2315566..23155931693563017.2727995-CDS-P-fluviatile_contig17:2315566..2315593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2315567..2315593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.8430314-UTR-P-fluviatile_contig17:2315593..23158061622815717.8430314-UTR-P-fluviatile_contig17:2315593..2315806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 2315594..2315806 -
1693563017.2800024-UTR-P-fluviatile_contig17:2315593..23158061693563017.2800024-UTR-P-fluviatile_contig17:2315593..2315806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 2315594..2315806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.3057.1

>prot_P-fluviatile_contig17.3057.1 ID=prot_P-fluviatile_contig17.3057.1|Name=mRNA_P-fluviatile_contig17.3057.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=142bp
MQEEFASLKVDLDEAKAEAKEQRQRASTMEQAYAELLGRWRAGAQERRGG
GIAGAGPVAAAAVGGDNEAKPPSGFSLNYNSNISASSRSSSTAGGDERRR
RCPSEKGGGRREERRPRGGRGAAAKGGDRRPASRARRELHSS
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mRNA from alignment at P-fluviatile_contig17:2314706..2315806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.3057.1 ID=mRNA_P-fluviatile_contig17.3057.1|Name=mRNA_P-fluviatile_contig17.3057.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1101bp|location=Sequence derived from alignment at P-fluviatile_contig17:2314706..2315806- (Porterinema fluviatile SAG_2381)
GATACTGAGAGTACCATGATATCAGCAAGAGTCAAACATACAACATAGCA
TGTACGCCTCTCTGAACAGAAAGGTGAAGAGCAAGCGTTGCTGGTGAAGC
TGACCAAGCGGGAAAAGGAGCTGAAGACGTGCAGGTTGGAGGCAAGAGAC
CTGGCGCAAGCGGTCGACTCCCTAGAAGCCGCTTTAGCACAGGTCCAGAA
GGAGTCGAAGGCAATGCAGGAGGAGTTTGCCTCGCTCAAGGTAGGAGCCG
GTAGCTGGTCGTCGCTGTCGTTGTTTTGTGTTGTTCCGTCTCACGTGGGA
TAGAAGTTGTTCATGTCAAGGCAGACCAAATGCAAGCAAGGCATGGAAAC
TATCGCATTTACCGTTCACTTTCCATTTCCCTCCACAAACCTTCCCTTCT
ATGCCGAGCCATGAAGCCGCGCGCGAACCTGGAAGGAACCTCCATGATAT
CCCCCTCGACCCGGACGACCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCTTGTCTTTAGTACTCACTCTCACCTCTCT
CTCCCCGCCACTGTTAGTCTAATGTTCTACGACACATTACAAAATTAATA
AGGTCGATCTCGATGAGGCGAAGGCCGAAGCCAAGGAACAACGCCAGCGA
GCGTCAACGATGGAACAGGCTTACGCCGAGCTCCTCGGGCGATGGAGAGC
AGGGGCGCAAGAGCGAAGAGGAGGAGGGATAGCAGGAGCAGGACCAGTAG
CAGCAGCAGCAGTAGGGGGCGACAACGAGGCAAAACCCCCGTCAGGTTTC
AGCCTCAACTACAACAGCAATATCAGCGCCAGCAGCAGGAGTAGCAGTAC
CGCAGGCGGCGACGAGCGTCGGCGGAGATGCCCCTCGGAGAAGGGAGGGG
GGCGACGGGAGGAGCGGAGGCCGCGCGGAGGAAGAGGGGCGGCAGCGAAG
GGTGGAGACAGACGGCCTGCGAGTAGGGCTCGGCGAGAGTTGCACTCGTC
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:2314706..2315806-

>mRNA_P-fluviatile_contig17.3057.1 ID=mRNA_P-fluviatile_contig17.3057.1|Name=mRNA_P-fluviatile_contig17.3057.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=852bp|location=Sequence derived from alignment at P-fluviatile_contig17:2314706..2315806- (Porterinema fluviatile SAG_2381)
ATGCAGGAGGAGTTTGCCTCGCTCAAGATGCAGGAGGAGTTTGCCTCGCT
CAAGGTCGATCTCGATGAGGCGAAGGCCGAAGCCAAGGAACAACGCCAGC
GAGCGTCAACGATGGAACAGGCTTACGCCGAGCTCCTCGGGCGATGGAGA
GCAGGGGCGCAAGAGCGAAGAGGAGGAGGGATAGCAGGAGCAGGACCAGT
AGCAGCAGCAGCAGTAGGGGGCGACAACGAGGCAAAACCCCCGTCAGGTT
TCAGCCTCAACTACAACAGCAATATCAGCGCCAGCAGCAGGAGTAGCAGT
ACCGCAGGCGGCGACGAGCGTCGGCGGAGATGCCCCTCGGAGAAGGGAGG
GGGGCGACGGGAGGAGCGGAGGCCGCGCGGAGGAAGAGGGGCGGCAGCGA
AGGGTGGAGACAGACGGCCTGCGAGTAGGGCTCGGCGAGAGTTGCACTCG
TCCGTCGATCTCGATGAGGCGAAGGCCGAAGCCAAGGAACAACGCCAGCG
AGCGTCAACGATGGAACAGGCTTACGCCGAGCTCCTCGGGCGATGGAGAG
CAGGGGCGCAAGAGCGAAGAGGAGGAGGGATAGCAGGAGCAGGACCAGTA
GCAGCAGCAGCAGTAGGGGGCGACAACGAGGCAAAACCCCCGTCAGGTTT
CAGCCTCAACTACAACAGCAATATCAGCGCCAGCAGCAGGAGTAGCAGTA
CCGCAGGCGGCGACGAGCGTCGGCGGAGATGCCCCTCGGAGAAGGGAGGG
GGGCGACGGGAGGAGCGGAGGCCGCGCGGAGGAAGAGGGGCGGCAGCGAA
GGGTGGAGACAGACGGCCTGCGAGTAGGGCTCGGCGAGAGTTGCACTCGT
CC
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