mRNA_P-fluviatile_contig17.3033.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig17.3033.1 vs. uniprot
Match: D7FY81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY81_ECTSI) HSP 1 Score: 342 bits (878), Expect = 1.360e-108 Identity = 197/345 (57.10%), Postives = 232/345 (67.25%), Query Frame = 1
Query: 235 VSQLLRRGISPSWEGHHVKHGDLAAAAVAIDAERVFIPWGFVAQEKVLESVTPTRVAVGGSTDSERIEKRAERLNVDTFEFLRGAEEAYRCTARMFALPPPPLPQGALADRGDGAAGRVTNGASRGGSVCDCRSGSGVSDDEGCRKVPQVEGENVGVGM------------TNFLEFNVASPQMSMFMNDVLEYYRVQGLVPRLSVSSVDAKLCKVGVRLGWISKNTNFMGMMSAEEVKYHLTMGMLGPEGAVINELEGRAPQRVIADVELTCEEEFVLEDNEGNVVYRPESRGPKARACTCAQHVHYLTLQSNIGEGTDLEWQITNINDVINPTFSYYFARFGH 1233
+ +L RR SP W+G+HV GDL++ IPWGFV+Q+KV ESV P R G D R+EKRAE LN+DT+EFLRGAE AYRC A +FA PP + AA SRG +C G N+G M T+F +F+VASP+MSMF+NDVLE YR QGLVPRLSV+SV+AKLCKVGVRLG ISKNTNF GMMSA+E +YHLTMGMLGPEG +INELEGRAPQRVIADVELTCEEEFV+ED +GNVV++ ES+GPK VHY+TLQSNIG+ +LEWQITNINDVI PTF+YYF+RFGH
Sbjct: 13 LKELSRRVFSP-WKGNHVACGDLSST---------IIPWGFVSQQKVSESVRPDRAGDGPGDDG-RVEKRAEHLNLDTWEFLRGAELAYRCAAGLFAPPPHKRKDPXXFEEAATAAPAFGQAGSRG----EC-GGXXXXXXXXXXXXXXXXSANLGPDMPPQRAQGGRTTPTDFFDFDVASPEMSMFLNDVLESYRAQGLVPRLSVASVEAKLCKVGVRLGGISKNTNF-GMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEFVVEDGKGNVVHKLESQGPK---------VHYITLQSNIGKDAELEWQITNINDVIKPTFNYYFSRFGH 331
BLAST of mRNA_P-fluviatile_contig17.3033.1 vs. uniprot
Match: W7TAG0_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG0_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.270e-21 Identity = 99/354 (27.97%), Postives = 149/354 (42.09%), Query Frame = 1
Query: 226 FKQVSQLLRRGISPSWEGHHVKHGDLAAAAVAIDAERVFIPWGFVAQEKV----------LESVTPTRVAV-----GGSTDSERIEKRAERLNVDTFEFLRGAEEAYRCTARMFALPPPPLPQGALADRGDGAAGRVTNGASRGGSVCDCRSGSGVSDDEGCRKVPQVEGENVGVGMTNFLEFNVASPQMSMFMNDVLEYYRVQGLVPRLSVSSVDAKLCKVGVRLGWISKNTNFM-GMMSAEEVKYHLTMGMLGPEGAVINELEGRAPQRVIADVELTCEEEFVLEDNE-------GNVVYRPESRG-PKARACTCAQHVHYLTLQSN-IGEGTDLEWQITNINDVI-NPTFS 1209
F Q + RG+ P W+G++V+ ++ + +R+ +PWGF+ +E V L PT + G T SE + + L D GA++AYR F P GSG E G +F N +P +S F+ D+ Y G+ P L V SV AKL + V G +SKNT + G M E H+ G++GPEG ++ ELEG P+R++A+VEL+ EE F + GN + +G + + HY T +S+ G+ LEW ++NINDVI +P+ S
Sbjct: 3 FAQRTTRWARGLFPRWKGYNVRWKEVLGPS----QDRMLLPWGFMGEEDVQGRVASRIRWLSEKQPTVIPQHEHMPGDLTTSEIANELSASLAED---MSHGAQQAYRRIVSYFLAVP----------------------------------GSG---------------EQAGK-YGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALFGTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVIASPSLS 299 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig17.3033.1 >prot_P-fluviatile_contig17.3033.1 ID=prot_P-fluviatile_contig17.3033.1|Name=mRNA_P-fluviatile_contig17.3033.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=345bp MSSFKAELFKQVSQLLRRGISPSWEGHHVKHGDLAAAAVAIDAERVFIPWback to top mRNA from alignment at P-fluviatile_contig17:1812146..1818843+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig17.3033.1 ID=mRNA_P-fluviatile_contig17.3033.1|Name=mRNA_P-fluviatile_contig17.3033.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6698bp|location=Sequence derived from alignment at P-fluviatile_contig17:1812146..1818843+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig17:1812146..1818843+ >mRNA_P-fluviatile_contig17.3033.1 ID=mRNA_P-fluviatile_contig17.3033.1|Name=mRNA_P-fluviatile_contig17.3033.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2070bp|location=Sequence derived from alignment at P-fluviatile_contig17:1812146..1818843+ (Porterinema fluviatile SAG_2381)back to top |