mRNA_P-fluviatile_contig17.3016.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.3016.1
Unique NamemRNA_P-fluviatile_contig17.3016.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:1479982..1482040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size454
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.3016.1prot_P-fluviatile_contig17.3016.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 1479982..1482018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.3911653-CDS-P-fluviatile_contig17:1479981..14802891622815717.3911653-CDS-P-fluviatile_contig17:1479981..1480289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1479982..1480289 -
1693563016.977559-CDS-P-fluviatile_contig17:1479981..14802891693563016.977559-CDS-P-fluviatile_contig17:1479981..1480289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1479982..1480289 -
1622815717.4066682-CDS-P-fluviatile_contig17:1481894..14820181622815717.4066682-CDS-P-fluviatile_contig17:1481894..1482018Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1481895..1482018 -
1693563016.9877086-CDS-P-fluviatile_contig17:1481894..14820181693563016.9877086-CDS-P-fluviatile_contig17:1481894..1482018Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1481895..1482018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.4178839-UTR-P-fluviatile_contig17:1482018..14820401622815717.4178839-UTR-P-fluviatile_contig17:1482018..1482040Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 1482019..1482040 -
1693563017.006215-UTR-P-fluviatile_contig17:1482018..14820401693563017.006215-UTR-P-fluviatile_contig17:1482018..1482040Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 1482019..1482040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.3016.1

>prot_P-fluviatile_contig17.3016.1 ID=prot_P-fluviatile_contig17.3016.1|Name=mRNA_P-fluviatile_contig17.3016.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
MKISEFKALGMTRRSVAPTAAVWCTLLVLGMRPLLCSTAPHVAGAAAATG
GLAFGSFSLDGGNGGRTGATTRHGAPIGSGGCWHSSCASCGSRSRGRSRS
GDPNNGDSYGVGRKRGGLALMSLLRLLSMVERKAGSGRGARTGG
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mRNA from alignment at P-fluviatile_contig17:1479982..1482040-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.3016.1 ID=mRNA_P-fluviatile_contig17.3016.1|Name=mRNA_P-fluviatile_contig17.3016.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2059bp|location=Sequence derived from alignment at P-fluviatile_contig17:1479982..1482040- (Porterinema fluviatile SAG_2381)
TGAAAGGAGAGAGTAGCAAGTGATGAAGATAAGCGAGTTCAAAGCCTTAG
GGATGACTCGGAGATCAGTGGCGCCCACTGCCGCCGTCTGGTGCACCCTG
TTGGTACTGGGTATGCGGCCCCTCTTGTGCTCGACGGCTCCGCATGGTGA
GGAGAGAGCTTTACCAAAAACTAATCCCTTGGCTTTCCGAAGCATGAAAT
TTGTCCCAAAACAAAGCACATGACATTTGATTGCTTTTGTCGCCTCTTCG
CAACGCACACACGCCCGAGAGAGCTTCCCTCCTCCTCCCTCTTTTTCAGG
GGTCGTTTGAGGTCAAGGCTCACTACATGTAGAGGCCATGTCCCCTTTGA
ACGCATCACACACGGCGCCAGACCCCCCGTCTCGGTCGAGAGAATGTCAC
GCGAATCGTCTTCATAAATCGATCCCACGTGGCTGATCACTGATGCGCAG
GCGCTGCGGCCATGTTCCGTTTGCATGTCGGTGTTATGCGTGCTATTGCA
CCCCCCCTTGCTTGATGGCGCTCTCCCTCTCTCTCTCTCGACTTTTGGGC
AGGGTTCGGCCTGCTTTTTCGTGCCCCCTGGTTGCGGTCCCAAGGTTTCC
CTCCCCGTTTTAACCTCGAACATGCGTGGATCGGGCTCTCGAAAAGCCAA
GGCTAACGAGAGATCATTTCACCGCATCAGGAACAAATGATGTCCCCCTA
TGTTCAGGAGAGAGGGCAGCCCATACCGACGACAGGCCCGCTCGCTCCAA
CTCCCTGCGTCCAGCTTGGCTACTCCTTTCCCGCGTGGGTGTGCGCGTCT
GAGATGTGCTGTTCGTGCTGGTTGATTTGGAAAACGCAGCTCCTTGCAAA
CATCGCAGGAACCGGGGGGGGGTGAGAGAAAATCTTCGGAGGAGCGCAGA
GCATCTCGAAACGTTTCTCTGGGAGAGCGGGTAAACGGTGCGTTCATTCA
GACACACTTCCCCCGGTCCACTTGCGCTCTCCGTGATCACGGCGACCCTA
TCGTAGTGGAGTGACTTGATCTCCTGGCGGCGACGCATTCGCAGCAGAGA
AGAAGCGTTGCGTGTGGTGCGCACACAAAACGTCACCTTCACTTGCGGCG
GGAACATCGATATTATACTCCCGAGTATATAGCAACAGTGGCGGAATCGC
AGTGTGCACAAGACGGAGTGCTCAACACAGAGATCCGCACACATCGGCTT
CGCGTCCAAGCAAGAGTTGACGTTTCGTTCATTGGTCAATTGATTGAACG
CTGCCGACGATTGTATTGCTTTAAGCACATCCGTTCGCGACACCTCTGCT
CTTCACAGGCTGAAGCTGGAGAGGGTACCTCCGCGCATCAAGATCAGCAT
CTCATTTTAGCTGGCTCACCCGTGGATCCCGCGGACCAACGAATACTTCT
TGCGTCATTGCTAACTTGATCAGAACGCCTACCCCGGAACTTTTTGTTTT
TCCCTTGCCGCAGAAATACACAATCACACATCTCGCATCACGAGTGCCGG
CGTTGTACGACACCCATGAACACCCACACGCCTCTTCAATTGTGCACGCG
ACACCCAATGTCACTCGCCGCAAGTCATCATCTCTCCCTTGTCCTCTATC
CCGAACTCTGCCTTGATCCTCTTCTTCCTCCCCCCCCATCCCTCCATTCT
CGCCGCCATCCCAAGTGCGCGCAAACACCACGAACGAACTTCGAACATGC
TCGTTAACATCGACATCACCACGATCCCCTACCGCCTCGGCCACACACCA
GTTGCGGGAGCTGCGGCAGCGACGGGTGGCCTAGCTTTCGGGTCGTTTTC
GCTCGACGGTGGCAATGGCGGCCGAACGGGGGCAACGACCAGACACGGGG
CCCCCATCGGTAGCGGGGGCTGCTGGCACAGCAGCTGCGCAAGCTGCGGC
AGCAGGAGCCGCGGCAGGAGCCGCAGCGGCGACCCGAATAATGGAGATTC
CTACGGCGTTGGCAGGAAGAGGGGAGGACTCGCGCTTATGTCTCTTCTCC
GCTTGCTGTCGATGGTGGAGAGAAAAGCGGGGTCCGGGAGGGGGGCGCGG
ACGGGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:1479982..1482040-

>mRNA_P-fluviatile_contig17.3016.1 ID=mRNA_P-fluviatile_contig17.3016.1|Name=mRNA_P-fluviatile_contig17.3016.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig17:1479982..1482040- (Porterinema fluviatile SAG_2381)
ATGAAGATAAGCGAGTTCAAAGCCTTAGGGATGACTCGGAGATCAGTGGC
GCCCACTGCCGCCGTCTGGTGCACCCTGTTGGTACTGGGTATGCGGCCCC
TCTTGTGCTCGACGGCTCCGCATGATGAAGATAAGCGAGTTCAAAGCCTT
AGGGATGACTCGGAGATCAGTGGCGCCCACTGCCGCCGTCTGGTGCACCC
TGTTGGTACTGGGTATGCGGCCCCTCTTGTGCTCGACGGCTCCGCATGTT
GCGGGAGCTGCGGCAGCGACGGGTGGCCTAGCTTTCGGGTCGTTTTCGCT
CGACGGTGGCAATGGCGGCCGAACGGGGGCAACGACCAGACACGGGGCCC
CCATCGGTAGCGGGGGCTGCTGGCACAGCAGCTGCGCAAGCTGCGGCAGC
AGGAGCCGCGGCAGGAGCCGCAGCGGCGACCCGAATAATGGAGATTCCTA
CGGCGTTGGCAGGAAGAGGGGAGGACTCGCGCTTATGTCTCTTCTCCGCT
TGCTGTCGATGGTGGAGAGAAAAGCGGGGTCCGGGAGGGGGGCGCGGACG
GGCGGGTTGCGGGAGCTGCGGCAGCGACGGGTGGCCTAGCTTTCGGGTCG
TTTTCGCTCGACGGTGGCAATGGCGGCCGAACGGGGGCAACGACCAGACA
CGGGGCCCCCATCGGTAGCGGGGGCTGCTGGCACAGCAGCTGCGCAAGCT
GCGGCAGCAGGAGCCGCGGCAGGAGCCGCAGCGGCGACCCGAATAATGGA
GATTCCTACGGCGTTGGCAGGAAGAGGGGAGGACTCGCGCTTATGTCTCT
TCTCCGCTTGCTGTCGATGGTGGAGAGAAAAGCGGGGTCCGGGAGGGGGG
CGCGGACGGGCGGG
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