mRNA_P-fluviatile_contig17.2988.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.2988.1
Unique NamemRNA_P-fluviatile_contig17.2988.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig17.2988.1 vs. uniprot
Match: D8LL69_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL69_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.070e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 VPSSTWAGVVWRVVPCKVAGCTKRPSFGVPGDVKASYCGTHKLEGMT 147
            VPSS WAG VWRV+PCKV GC KRPSFG  G++KASYCGTHKL GMT
Sbjct:  234 VPSSAWAGDVWRVMPCKVDGCKKRPSFGGVGELKASYCGTHKLAGMT 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.2988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL69_ECTSI1.070e-1478.72EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:1129399..1132464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-24_002730.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1290
Cds size1290
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.2988.1prot_P-fluviatile_contig17.2988.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 1129399..1132464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.1620882-CDS-P-fluviatile_contig17:1129398..11301901622815717.1620882-CDS-P-fluviatile_contig17:1129398..1130190Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1129399..1130190 -
1693563013.1258006-CDS-P-fluviatile_contig17:1129398..11301901693563013.1258006-CDS-P-fluviatile_contig17:1129398..1130190Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1129399..1130190 -
1622815717.1787436-CDS-P-fluviatile_contig17:1130582..11307891622815717.1787436-CDS-P-fluviatile_contig17:1130582..1130789Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1130583..1130789 -
1693563013.134508-CDS-P-fluviatile_contig17:1130582..11307891693563013.134508-CDS-P-fluviatile_contig17:1130582..1130789Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1130583..1130789 -
1622815717.193107-CDS-P-fluviatile_contig17:1131528..11316871622815717.193107-CDS-P-fluviatile_contig17:1131528..1131687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1131529..1131687 -
1693563013.1424656-CDS-P-fluviatile_contig17:1131528..11316871693563013.1424656-CDS-P-fluviatile_contig17:1131528..1131687Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1131529..1131687 -
1622815717.209434-CDS-P-fluviatile_contig17:1132332..11324641622815717.209434-CDS-P-fluviatile_contig17:1132332..1132464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1132333..1132464 -
1693563013.1516373-CDS-P-fluviatile_contig17:1132332..11324641693563013.1516373-CDS-P-fluviatile_contig17:1132332..1132464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 1132333..1132464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.2988.1

>prot_P-fluviatile_contig17.2988.1 ID=prot_P-fluviatile_contig17.2988.1|Name=mRNA_P-fluviatile_contig17.2988.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=430bp
AEVPSSTWAGVVWRVVPCKVAGCTKRPSFGVPGDVKASYCGTHKLEGMTL
VNRKRRCSKAGCLRQPLYGSDSDRIPLACGGHRAEGMVNVTHRRCAEPGC
TIQPVYGLDPDAVGIGDEKFMPQYCAGHKKPGMISQKRTSCATSRCYRRP
TFGIPGEKGRYCAEHKVDGMVKILQSRRLRGGSPYKAHDAAARSSPNAPP
QPTTSANVDQSGPPPRASGVDGGSSNATRIAAVNAGSSATVPPAVVMPAL
RGPLSHQAAGPPVGPPPPRQNGGGGGADSSTNQESFASSATAGAPAAGIA
TAAREGRAEGGATSAATSSSGCGGGDGYQRGRGDGAREETDDDEVIGAAA
SGGLVPVSLPLPPVIPHHQQQAQQQHQFPPQSQLPLPHHQLLQSTRLSAP
AGGSGGGGGGLSSPPRGNPPQHSPRQHAHP
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mRNA from alignment at P-fluviatile_contig17:1129399..1132464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.2988.1 ID=mRNA_P-fluviatile_contig17.2988.1|Name=mRNA_P-fluviatile_contig17.2988.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3066bp|location=Sequence derived from alignment at P-fluviatile_contig17:1129399..1132464- (Porterinema fluviatile SAG_2381)
GCCGAGGTGCCCTCGTCGACGTGGGCGGGGGTCGTGTGGCGGGTAGTGCC
GTGCAAGGTGGCGGGGTGCACGAAGAGGCCAAGCTTCGGGGTCCCGGGAG
ACGTGAAAGCATCGTATTGCGGGACCCACAAGGTGTGCTTGTGTCGCCAA
CGTGCAGCTAGCTGAATACGGGACGTTCGTAACGGGTGCCAATGCGTGCT
CTGTAATGAACTGATGAAGTGGGTTTGGTGGACTTGACTGCATAATGCTG
TTTTCAGGACGCCTTCACATTATGCTTTTGCCAGGCTATTGGGATTGATT
TCACATCCGACACTCTTTGGTCCAGACTCTTCGGAGTGCGCGTGGACATG
CATTTGTCGAGCGGGCTCCGGTGTTGCCCGTGTTACATGTTGTGTTTTGT
GCCTGATGGCCCTCACGTTGAACGGCAACTCCACTCTGTGCCAGCCATAT
TCGGCAAGTGAAAGGCGGACATCTGTCGCATCCTTTCGCGATTTTGAATG
GCTTCCTGCCCACCCCACCCCCTGTCTATGCTCACTTCATCTCTCTGCCC
CCCGCCACTCTCTTGTGTGCGCGGGGGTGCATGAAACGCCTACCCCGTGC
ACTGTCGGGCCCCGCCCCACTCACTGCCTCTGTCAACATGCCCCCCCTCC
CCCCTCAAAAATACGAAACCTCATCAACCTTCCCCTACTGGCGTTGTTCG
CCGGAAAAAATGCGCGGGCCGTCCTCTTGCCCTCCTTCCCTCCTCACTCC
CGTGTGGCGGGTCTACCCTACTTGAAGCTGGAGGGCATGACGCTGGTGAA
TCGCAAGCGGCGGTGCTCAAAGGCGGGTTGCTTGAGGCAGCCGCTCTACG
GCAGCGACTCCGACCGGATACCCCTGGCGTGCGGGGGGCACCGTGCGGAG
GGGATGGTCAACGTCACGCACCGCCGGTGCGCCGAGGTGTGTGTGTGGTT
TGTTTGTGTATGTGCCGGGGAGGGGGGTTACGTGTGTGGTGTGCGAGTGT
GTGCGTTTATTGTTATTGTTGTGTTTTGTGCGTGTGTTTGAGTGTGCCTC
CTTCTCTTGGCATCGACCGCGCTGGCTGGCCGGCGGACAAATTCAGAAGA
AATACGCCAGACTTCGGCGAGGCAAAAGCACTTGCGTACATGTGTGTGTT
TTTGCTGTTTGTGCGTGTTTGTCTTCGTTGCCGTCGGCCGTGCTTGTTTC
CGTTCGGCTAAGTTTCGAAGAGACGGCAGTCGACAGCGCGGAAGAAAACG
ACCACAGCTGCCGGACCGATGTGATCGGTGTGTGTATGCGAGAGGGTGAG
AGCATCGCGACGAATGCGGTTGCGCCATCATTGGCTTGCGCGTCAGTGGA
ACTCTGTCCGTCGTTCTCCGTCGTTCCCCCTTTGATATATATATCTCTCT
CTGTTACTCTCTCTCTCTCACTCACTCTCTTTCTGCCTCTCGCTCTCCCT
CTCCCTCCCTCTTTCTCTGGCCGGCGGGTTTGTAATTTGGCCTCGCCTTT
CCCTTGCCCGGCTGTTGCTGCGGATTGTACAATACTCCGCTCCCGATTCG
AACGAAGTCATTCTCGTCTGTTCATGCACACAGCAGCTACATGTTTAATT
CTGTCCTTTGTTGCTTACCTACCCCCGCCTCCTCGATAACCATTGCGTCG
GTGTCGAGGGGGGCGTCGCTTGCAGCCTGGTTGCACGATCCAACCCGTCT
ACGGCTTAGACCCGGATGCGGTGGGCATCGGGGACGAAAAGTTCATGCCC
CAGTACTGCGCCGGCCACAAGAAGCCGGGCATGATTAGCCAGAAGCGGAC
GAGCTGCGCTACGAGCCGGTGTTACCGGCGGCCGACGTTCGGGATACCCG
GGGAGAAGGGGAGGTACTGCGCCGAGCACAAGGCGAGCTAAGCTTCTCGC
GCTCGAAATCTTTGTTTTGTTGTGTTTGCCGCGTTTTTGCTGCTGCTACT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCGCGTATCCAACA
CGCCCGTATTGCTTGTCTTTGCTGTTGCTGTAACTTGGCGCGTTCGTATT
GATGGCCGCAAGCATCGCGTGTGCGACAGCCCGTTGAATTTTCTTTAGAT
CCCACGTGGCCCCTGTGCATCTTTAGTTCATGCAAAAGTTCATGAAAAAA
TTTCGAGCACCGATCCGTTACGTTTGAGACAAGAGCCACGTTTGTGACGC
CTTTCGCCCCGGACACCTTTTCTCAAAACGAAATCATCCGCCCCGTCAAA
TCACGCCGCTTTCTGTCCCGGCAGGTCGACGGGATGGTGAAAATACTTCA
GTCACGACGCCTTCGCGGAGGTTCGCCGTACAAGGCTCACGACGCGGCCG
CGAGATCGTCGCCGAATGCCCCTCCTCAGCCAACCACCAGCGCCAACGTT
GACCAGTCTGGGCCGCCGCCACGAGCCAGCGGGGTAGACGGTGGCAGCAG
CAACGCTACGCGAATAGCGGCGGTGAACGCCGGATCTTCCGCGACGGTAC
CGCCTGCTGTGGTCATGCCTGCGTTGCGGGGCCCCTTGTCTCATCAGGCC
GCCGGCCCGCCAGTTGGGCCGCCGCCGCCGCGTCAGAACGGCGGCGGCGG
CGGCGCTGACAGCAGCACCAACCAGGAGAGCTTTGCGAGCTCGGCGACAG
CCGGGGCACCAGCCGCAGGAATCGCGACAGCCGCACGGGAAGGGAGAGCT
GAGGGCGGAGCGACCTCAGCGGCGACGAGCAGCAGCGGCTGCGGCGGCGG
CGATGGGTACCAGCGCGGTCGAGGTGACGGAGCAAGGGAAGAGACAGATG
ATGACGAGGTGATCGGGGCAGCAGCATCGGGAGGGCTAGTGCCGGTTTCG
TTACCGCTGCCGCCGGTGATCCCCCACCACCAGCAACAAGCACAGCAGCA
GCACCAGTTCCCGCCCCAGTCACAGCTGCCGCTCCCGCACCACCAGTTAC
TACAATCGACGCGGCTCTCGGCTCCAGCCGGAGGTAGCGGCGGCGGCGGC
GGTGGACTGTCGTCTCCGCCACGTGGCAATCCTCCACAGCACTCTCCGCG
TCAACATGCCCACCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:1129399..1132464-

>mRNA_P-fluviatile_contig17.2988.1 ID=mRNA_P-fluviatile_contig17.2988.1|Name=mRNA_P-fluviatile_contig17.2988.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2580bp|location=Sequence derived from alignment at P-fluviatile_contig17:1129399..1132464- (Porterinema fluviatile SAG_2381)
GCCGAGGTGCCCTCGTCGACGTGGGCGGGGGTCGTGTGGCGGGTAGTGCC
GTGCAAGGTGGCGGGGTGCACGAAGAGGCCAAGCTTCGGGGTCCCGGGAG
ACGTGAAAGCATCGTATTGCGGGACCCACAAGGCCGAGGTGCCCTCGTCG
ACGTGGGCGGGGGTCGTGTGGCGGGTAGTGCCGTGCAAGGTGGCGGGGTG
CACGAAGAGGCCAAGCTTCGGGGTCCCGGGAGACGTGAAAGCATCGTATT
GCGGGACCCACAAGCTGGAGGGCATGACGCTGGTGAATCGCAAGCGGCGG
TGCTCAAAGGCGGGTTGCTTGAGGCAGCCGCTCTACGGCAGCGACTCCGA
CCGGATACCCCTGGCGTGCGGGGGGCACCGTGCGGAGGGGATGGTCAACG
TCACGCACCGCCGGTGCGCCGAGCTGGAGGGCATGACGCTGGTGAATCGC
AAGCGGCGGTGCTCAAAGGCGGGTTGCTTGAGGCAGCCGCTCTACGGCAG
CGACTCCGACCGGATACCCCTGGCGTGCGGGGGGCACCGTGCGGAGGGGA
TGGTCAACGTCACGCACCGCCGGTGCGCCGAGCCTGGTTGCACGATCCAA
CCCGTCTACGGCTTAGACCCGGATGCGGTGGGCATCGGGGACGAAAAGTT
CATGCCCCAGTACTGCGCCGGCCACAAGAAGCCGGGCATGATTAGCCAGA
AGCGGACGAGCTGCGCTACGAGCCGGTGTTACCGGCGGCCGACGTTCGGG
ATACCCGGGGAGAAGGGGAGGTACTGCGCCGAGCACAAGCCTGGTTGCAC
GATCCAACCCGTCTACGGCTTAGACCCGGATGCGGTGGGCATCGGGGACG
AAAAGTTCATGCCCCAGTACTGCGCCGGCCACAAGAAGCCGGGCATGATT
AGCCAGAAGCGGACGAGCTGCGCTACGAGCCGGTGTTACCGGCGGCCGAC
GTTCGGGATACCCGGGGAGAAGGGGAGGTACTGCGCCGAGCACAAGGTCG
ACGGGATGGTGAAAATACTTCAGTCACGACGCCTTCGCGGAGGTTCGCCG
TACAAGGCTCACGACGCGGCCGCGAGATCGTCGCCGAATGCCCCTCCTCA
GCCAACCACCAGCGCCAACGTTGACCAGTCTGGGCCGCCGCCACGAGCCA
GCGGGGTAGACGGTGGCAGCAGCAACGCTACGCGAATAGCGGCGGTGAAC
GCCGGATCTTCCGCGACGGTACCGCCTGCTGTGGTCATGCCTGCGTTGCG
GGGCCCCTTGTCTCATCAGGCCGCCGGCCCGCCAGTTGGGCCGCCGCCGC
CGCGTCAGAACGGCGGCGGCGGCGGCGCTGACAGCAGCACCAACCAGGAG
AGCTTTGCGAGCTCGGCGACAGCCGGGGCACCAGCCGCAGGAATCGCGAC
AGCCGCACGGGAAGGGAGAGCTGAGGGCGGAGCGACCTCAGCGGCGACGA
GCAGCAGCGGCTGCGGCGGCGGCGATGGGTACCAGCGCGGTCGAGGTGAC
GGAGCAAGGGAAGAGACAGATGATGACGAGGTGATCGGGGCAGCAGCATC
GGGAGGGCTAGTGCCGGTTTCGTTACCGCTGCCGCCGGTGATCCCCCACC
ACCAGCAACAAGCACAGCAGCAGCACCAGTTCCCGCCCCAGTCACAGCTG
CCGCTCCCGCACCACCAGTTACTACAATCGACGCGGCTCTCGGCTCCAGC
CGGAGGTAGCGGCGGCGGCGGCGGTGGACTGTCGTCTCCGCCACGTGGCA
ATCCTCCACAGCACTCTCCGCGTCAACATGCCCACCCCGTCGACGGGATG
GTGAAAATACTTCAGTCACGACGCCTTCGCGGAGGTTCGCCGTACAAGGC
TCACGACGCGGCCGCGAGATCGTCGCCGAATGCCCCTCCTCAGCCAACCA
CCAGCGCCAACGTTGACCAGTCTGGGCCGCCGCCACGAGCCAGCGGGGTA
GACGGTGGCAGCAGCAACGCTACGCGAATAGCGGCGGTGAACGCCGGATC
TTCCGCGACGGTACCGCCTGCTGTGGTCATGCCTGCGTTGCGGGGCCCCT
TGTCTCATCAGGCCGCCGGCCCGCCAGTTGGGCCGCCGCCGCCGCGTCAG
AACGGCGGCGGCGGCGGCGCTGACAGCAGCACCAACCAGGAGAGCTTTGC
GAGCTCGGCGACAGCCGGGGCACCAGCCGCAGGAATCGCGACAGCCGCAC
GGGAAGGGAGAGCTGAGGGCGGAGCGACCTCAGCGGCGACGAGCAGCAGC
GGCTGCGGCGGCGGCGATGGGTACCAGCGCGGTCGAGGTGACGGAGCAAG
GGAAGAGACAGATGATGACGAGGTGATCGGGGCAGCAGCATCGGGAGGGC
TAGTGCCGGTTTCGTTACCGCTGCCGCCGGTGATCCCCCACCACCAGCAA
CAAGCACAGCAGCAGCACCAGTTCCCGCCCCAGTCACAGCTGCCGCTCCC
GCACCACCAGTTACTACAATCGACGCGGCTCTCGGCTCCAGCCGGAGGTA
GCGGCGGCGGCGGCGGTGGACTGTCGTCTCCGCCACGTGGCAATCCTCCA
CAGCACTCTCCGCGTCAACATGCCCACCCC
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